mRNA_M-pyrifera_M_contig83074.19404.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83074.19404.1
Unique NamemRNA_M-pyrifera_M_contig83074.19404.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83074.19404.1 vs. uniprot
Match: A0A2D5ASK2_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ASK2_9BACT)

HSP 1 Score: 127 bits (318), Expect = 3.110e-30
Identity = 83/209 (39.71%), Postives = 112/209 (53.59%), Query Frame = 1 
Query:    1 RSGDLGFYVGRLLALSRTELKELLRADEDERRDRSYLELVAELRGVAPAALASDVRARLTASLADLDLLAQHMGFVPRTAGER----PAAALVRELETWRRGIEDATASRLFAEATGFAPGRLDPGLLLEYVELDWISVHMQWDAARLADWAIDSRRTWLRGWRDGVMLPRLMAVLRSGPA-PEAADVALTLSALWYG-GEELSATLDG 609
            R  DL FY+  L    +++ K L       R D S L+LVA+L+G   A     +  RLT SL+ L+ LA+ + +   T        P   +V ELE  RR +EDATASRLF EATGF+PGR+D  +L  + ++ WI+  + WD  R  DWA  +R  WLR WRDG  LPRL+  L   P  P   +  L L A+ +G  +     LDG
Sbjct:  155 RGRDLSFYLRNLFEFKKSDWKRLFEKAAGGRMDVSLLDLVADLKGRTGAEQEEFMFKRLTRSLSQLERLARMLEWPQDTEDPAIPIDPLDRIVFELERVRRQVEDATASRLFKEATGFSPGRIDAEVLTYFFDVSWIARRIGWDGRRTEDWAHTARLHWLRSWRDGYALPRLVWSLALDPVRPHGEEALLDLLAVLFGTSQRFVRALDG 363
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BLAST of mRNA_M-pyrifera_M_contig83074.19404.1 vs. uniprot
Match: A0A521KPP9_9BACT (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KPP9_9BACT)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-17
Identity = 67/169 (39.64%), Postives = 92/169 (54.44%), Query Frame = 1 
Query:    1 RSGDLGFYVGRLLALSRTELKELLRADEDERRDRSYLELVAELRGVAPAA--LASDVRARLTASLADLDLLAQ----HMGFVPRTAGER----PAAALVRELETWRRGIEDATASRLFAEATGFAPGRLDPGLLLEYVELDWISVHMQWDAARLADWAIDSRRTWLRGW 477
            R+ D+ FY   LL  S ++ + L R  E E+R  S+L+L  +L GVAP+     +D+ AR   SL DL  LA          P    ER     A  L+ ELE  R  +ED TAS  F +ATGFAPGRL+P LLL  ++L+W+   ++W+  RL  WA  +R  W + W
Sbjct:   22 RALDVWFYALSLLGFSGSDSRAL-RKLEGEKRAHSFLQLAVDL-GVAPSPERARADLCARAATSLEDLRALAALCEPDAEAGPAAGSERVRGSDAGWLLAELEAARTSVEDLTASWAFEQATGFAPGRLEPQLLLA-LDLEWLCAALRWEPRRLEAWAASARARWRQRW 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83074.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D5ASK2_9BACT3.110e-3039.71Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A521KPP9_9BACT1.120e-1739.64Transpeptidase domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83074contigM-pyrifera_M_contig83074:286..894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.6690495-CDS-M-pyrifera_M_contig83074:285..8941622816737.6690495-CDS-M-pyrifera_M_contig83074:285..894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83074 286..894 -
1692278148.94368-CDS-M-pyrifera_M_contig83074:285..8941692278148.94368-CDS-M-pyrifera_M_contig83074:285..894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83074 286..894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83074.19404.1prot_M-pyrifera_M_contig83074.19404.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83074 286..894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83074.19404.1

>prot_M-pyrifera_M_contig83074.19404.1 ID=prot_M-pyrifera_M_contig83074.19404.1|Name=mRNA_M-pyrifera_M_contig83074.19404.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
RSGDLGFYVGRLLALSRTELKELLRADEDERRDRSYLELVAELRGVAPAA
LASDVRARLTASLADLDLLAQHMGFVPRTAGERPAAALVRELETWRRGIE
DATASRLFAEATGFAPGRLDPGLLLEYVELDWISVHMQWDAARLADWAID
SRRTWLRGWRDGVMLPRLMAVLRSGPAPEAADVALTLSALWYGGEELSAT
LDG
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mRNA from alignment at M-pyrifera_M_contig83074:286..894-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83074.19404.1 ID=mRNA_M-pyrifera_M_contig83074.19404.1|Name=mRNA_M-pyrifera_M_contig83074.19404.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig83074:286..894- (Macrocystis pyrifera P11B4 male)
CGCTCGGGCGACCTGGGCTTCTACGTCGGGCGGCTGCTGGCGCTGTCGCG
GACCGAGCTCAAGGAGCTGCTCCGCGCCGACGAGGACGAGCGCCGGGACC
GGAGCTACCTGGAGCTGGTGGCCGAGCTGCGCGGGGTGGCGCCCGCAGCG
CTGGCCAGCGATGTGCGCGCGCGGCTGACCGCGTCGCTCGCGGACCTGGA
CCTCTTGGCGCAGCACATGGGCTTCGTGCCGCGGACCGCGGGCGAGCGGC
CGGCGGCGGCGCTGGTGCGCGAGCTCGAGACGTGGCGGCGCGGGATCGAG
GACGCGACGGCGAGCCGCTTGTTCGCCGAGGCGACGGGCTTCGCGCCGGG
GCGGCTCGACCCGGGGTTGTTGCTGGAGTACGTGGAGCTCGACTGGATCT
CCGTGCACATGCAGTGGGACGCGGCGCGGCTGGCGGACTGGGCGATCGAC
AGCCGGCGCACGTGGCTGCGCGGGTGGCGCGATGGCGTGATGCTGCCGCG
CTTGATGGCGGTGCTGCGCAGCGGGCCGGCGCCGGAGGCGGCGGACGTGG
CGCTGACCTTGTCGGCGCTGTGGTACGGCGGCGAGGAGTTGAGCGCGACG
CTGGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83074:286..894-

>mRNA_M-pyrifera_M_contig83074.19404.1 ID=mRNA_M-pyrifera_M_contig83074.19404.1|Name=mRNA_M-pyrifera_M_contig83074.19404.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig83074:286..894- (Macrocystis pyrifera P11B4 male)
CGCTCGGGCGACCTGGGCTTCTACGTCGGGCGGCTGCTGGCGCTGTCGCG
GACCGAGCTCAAGGAGCTGCTCCGCGCCGACGAGGACGAGCGCCGGGACC
GGAGCTACCTGGAGCTGGTGGCCGAGCTGCGCGGGGTGGCGCCCGCAGCG
CTGGCCAGCGATGTGCGCGCGCGGCTGACCGCGTCGCTCGCGGACCTGGA
CCTCTTGGCGCAGCACATGGGCTTCGTGCCGCGGACCGCGGGCGAGCGGC
CGGCGGCGGCGCTGGTGCGCGAGCTCGAGACGTGGCGGCGCGGGATCGAG
GACGCGACGGCGAGCCGCTTGTTCGCCGAGGCGACGGGCTTCGCGCCGGG
GCGGCTCGACCCGGGGTTGTTGCTGGAGTACGTGGAGCTCGACTGGATCT
CCGTGCACATGCAGTGGGACGCGGCGCGGCTGGCGGACTGGGCGATCGAC
AGCCGGCGCACGTGGCTGCGCGGGTGGCGCGATGGCGTGATGCTGCCGCG
CTTGATGGCGGTGCTGCGCAGCGGGCCGGCGCCGGAGGCGGCGGACGTGG
CGCTGACCTTGTCGGCGCTGTGGTACGGCGGCGAGGAGTTGAGCGCGACG
CTGGACGGCCGCTCGGGCGACCTGGGCTTCTACGTCGGGCGGCTGCTGGC
GCTGTCGCGGACCGAGCTCAAGGAGCTGCTCCGCGCCGACGAGGACGAGC
GCCGGGACCGGAGCTACCTGGAGCTGGTGGCCGAGCTGCGCGGGGTGGCG
CCCGCAGCGCTGGCCAGCGATGTGCGCGCGCGGCTGACCGCGTCGCTCGC
GGACCTGGACCTCTTGGCGCAGCACATGGGCTTCGTGCCGCGGACCGCGG
GCGAGCGGCCGGCGGCGGCGCTGGTGCGCGAGCTCGAGACGTGGCGGCGC
GGGATCGAGGACGCGACGGCGAGCCGCTTGTTCGCCGAGGCGACGGGCTT
CGCGCCGGGGCGGCTCGACCCGGGGTTGTTGCTGGAGTACGTGGAGCTCG
ACTGGATCTCCGTGCACATGCAGTGGGACGCGGCGCGGCTGGCGGACTGG
GCGATCGACAGCCGGCGCACGTGGCTGCGCGGGTGGCGCGATGGCGTGAT
GCTGCCGCGCTTGATGGCGGTGCTGCGCAGCGGGCCGGCGCCGGAGGCGG
CGGACGTGGCGCTGACCTTGTCGGCGCTGTGGTACGGCGGCGAGGAGTTG
AGCGCGACGCTGGACGGC
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