mRNA_M-pyrifera_M_contig109264.1935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109264.1935.1
Unique NamemRNA_M-pyrifera_M_contig109264.1935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A2E7K4M5_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K4M5_9PLAN)

HSP 1 Score: 229 bits (585), Expect = 1.590e-68
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW
Sbjct:  338 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 444
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A6I6AD93_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AD93_9PLAN)

HSP 1 Score: 219 bits (558), Expect = 4.910e-68
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EEHDQLP+SELPDIAAQAGINWIKFPLWNVMAS DIHH SRIAEMLDQ SN+GITP+GLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW
Sbjct:  323 EEHDQLPISELPDIAAQAGINWIKFPLWNVMASADIHHPSRIAEMLDQFSNRGITPIGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 429
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A350KAM6_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KAM6_9PLAN)

HSP 1 Score: 191 bits (486), Expect = 2.070e-57
Identity = 88/107 (82.24%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EE + L V ELP+IAAQAGINWIK+PLWNVM S DIH +S++AEMLDQ SN+GITPVGLLNHPP+ LRSQFAKDW GVSGIFTMP+SFWSPSLEEVFARYTSLVNYW
Sbjct:  323 EESENLAVKELPEIAAQAGINWIKYPLWNVMESDDIHRTSQVAEMLDQFSNRGITPVGLLNHPPKKLRSQFAKDWLGVSGIFTMPSSFWSPSLEEVFARYTSLVNYW 429
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A518I697_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I697_9PLAN)

HSP 1 Score: 196 bits (498), Expect = 2.490e-56
Identity = 89/107 (83.18%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            +E++QLP++ELPDIAAQAGINWIKFPLWNVMAS D    SR+AEMLD  SN+ ITP+GLLNHPP++LRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW
Sbjct:  323 QENNQLPINELPDIAAQAGINWIKFPLWNVMASEDTQRPSRVAEMLDAFSNRSITPIGLLNHPPKELRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 429
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A6C9R8_9PLAN (Uncharacterized protein n=9 Tax=Planctomycetaceae TaxID=126 RepID=A6C9R8_9PLAN)

HSP 1 Score: 190 bits (483), Expect = 3.050e-54
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EE + L V ELP+IAAQAGINWIK+PLWNVM S DIH +S++AEMLDQ +N+GITPVGLLNHPP+ LRSQFAKDW GVSGIFTMP+SFWSPSLEEVFARYTSLVNYW
Sbjct:  323 EESENLAVKELPEIAAQAGINWIKYPLWNVMESDDIHRTSQVAEMLDQFTNRGITPVGLLNHPPKKLRSQFAKDWLGVSGIFTMPSSFWSPSLEEVFARYTSLVNYW 429
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A517W3F1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W3F1_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 3.620e-52
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    1 EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EE+ QLP+++LPDIAAQAGINWIKFPLWNVM+S + +  +++AEMLD  SN+GITP+GLLNHPP+ +RSQFAKDWQGVSGIFTMP SFWSPSLEEVFAR+TSLVNYW
Sbjct:  323 EENAQLPLNKLPDIAAQAGINWIKFPLWNVMSSKNGYKPNQVAEMLDAMSNKGITPIGLLNHPPKAIRSQFAKDWQGVSGIFTMPVSFWSPSLEEVFARFTSLVNYW 429
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A3B1DYR6_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DYR6_9ZZZZ)

HSP 1 Score: 120 bits (300), Expect = 2.480e-29
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:   10 DQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            +++  +EL ++A+QAGINW+K+PLW    S+D    +R + +LD+ S   ITPVGLLN P   LRS+FAKDW G+S IFTM  SFW+P ++ V A+Y+S V YW
Sbjct:  329 EEMSATELANVASQAGINWMKYPLWQSALSSDRQVIARTSMLLDRLSQNHITPVGLLNQPASMLRSKFAKDWTGISEIFTMTPSFWTPLIDPVVAKYSSSVQYW 432
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A517R3U4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R3U4_9BACT)

HSP 1 Score: 110 bits (275), Expect = 5.870e-26
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:   13 QLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            +L   EL   A QAGINWIK+P+W   A  D   + R A ++D+  + G+  VG LNHPPR+LR++FA +W+G S +FT+P+  W PSLE V ARY+S V +W
Sbjct:  367 KLGADELASAATQAGINWIKYPVWQ-QAVDDPIAAGRTAVLIDKLGSAGLRTVGTLNHPPRELRAKFAHNWKGASELFTLPSDVWLPSLEPVVARYSSRVRHW 468
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A3D3R214_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A3D3R214_9PLAN)

HSP 1 Score: 105 bits (261), Expect = 3.290e-24
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:  169 VGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            +GLLNHPP+ LRSQFAKDW GVSGIFTMP+SFWSPSLEEVFARYTSLVNYW
Sbjct:    1 MGLLNHPPKKLRSQFAKDWLGVSGIFTMPSSFWSPSLEEVFARYTSLVNYW 51
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BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Match: A0A7C4LKE8_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LKE8_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 2.160e-23
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:    4 EHDQLPVS---ELPDIAAQAGINWIKFPLWNVM-ASTDIHHSSRIAEMLDQCSNQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARYTSLVNYW 321
            EHD LP     ELP IAAQAG+NW+K PLW  +      H + ++A + D+   QGI  +G+L+ PP  LR++FA+ W GV+ +F +P   W  SLE V AR++S V++W
Sbjct:  347 EHD-LPKQLRDELPQIAAQAGVNWLKHPLWRALDEGKTAHDAGQVARLFDRLRAQGIETIGVLDEPPAALRNKFAQQWLGVAEVFRLPPPVWRSSLEPVVARFSSTVHHW 455
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109264.1935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2E7K4M5_9PLAN1.590e-68100.00Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A6I6AD93_9PLAN4.910e-6894.39Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A350KAM6_9PLAN2.070e-5782.24Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A518I697_9PLAN2.490e-5683.18Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A6C9R8_9PLAN3.050e-5481.31Uncharacterized protein n=9 Tax=Planctomycetaceae ... [more]
A0A517W3F1_9PLAN3.620e-5277.57Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A3B1DYR6_9ZZZZ2.480e-2950.96Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A517R3U4_9BACT5.870e-2648.54Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3D3R214_9PLAN3.290e-2490.20Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A7C4LKE8_9PLAN2.160e-2344.55Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109264contigM-pyrifera_M_contig109264:286..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score189.1
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog344747.PM8797T_06997
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell adhesion involved in biofilm formation
EggNOG OGs2IZ1T@203682,COG1470@1,COG1470@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.5391219-CDS-M-pyrifera_M_contig109264:285..6061622815602.5391219-CDS-M-pyrifera_M_contig109264:285..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109264 286..606 -
1692277482.805878-CDS-M-pyrifera_M_contig109264:285..6061692277482.805878-CDS-M-pyrifera_M_contig109264:285..606Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109264 286..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109264.1935.1prot_M-pyrifera_M_contig109264.1935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109264 286..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109264.1935.1

>prot_M-pyrifera_M_contig109264.1935.1 ID=prot_M-pyrifera_M_contig109264.1935.1|Name=mRNA_M-pyrifera_M_contig109264.1935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
EEHDQLPVSELPDIAAQAGINWIKFPLWNVMASTDIHHSSRIAEMLDQCS
NQGITPVGLLNHPPRDLRSQFAKDWQGVSGIFTMPASFWSPSLEEVFARY
TSLVNYW
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mRNA from alignment at M-pyrifera_M_contig109264:286..606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109264.1935.1 ID=mRNA_M-pyrifera_M_contig109264.1935.1|Name=mRNA_M-pyrifera_M_contig109264.1935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig109264:286..606- (Macrocystis pyrifera P11B4 male)
GAAGAACATGACCAGTTGCCTGTTTCTGAGCTGCCTGATATCGCAGCGCA
AGCAGGAATCAACTGGATCAAATTTCCGCTCTGGAATGTTATGGCGTCGA
CTGACATTCACCATTCCAGTCGGATCGCGGAGATGCTCGACCAGTGTTCC
AACCAAGGTATTACTCCCGTTGGTTTGTTAAATCATCCCCCTCGGGATTT
ACGCTCGCAGTTCGCCAAAGACTGGCAGGGGGTCAGCGGAATTTTTACGA
TGCCCGCCAGTTTCTGGTCCCCTTCACTCGAAGAGGTCTTTGCGCGATAC
ACTTCTTTAGTCAATTACTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109264:286..606-

>mRNA_M-pyrifera_M_contig109264.1935.1 ID=mRNA_M-pyrifera_M_contig109264.1935.1|Name=mRNA_M-pyrifera_M_contig109264.1935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig109264:286..606- (Macrocystis pyrifera P11B4 male)
GAAGAACATGACCAGTTGCCTGTTTCTGAGCTGCCTGATATCGCAGCGCA
AGCAGGAATCAACTGGATCAAATTTCCGCTCTGGAATGTTATGGCGTCGA
CTGACATTCACCATTCCAGTCGGATCGCGGAGATGCTCGACCAGTGTTCC
AACCAAGGTATTACTCCCGTTGGTTTGTTAAATCATCCCCCTCGGGATTT
ACGCTCGCAGTTCGCCAAAGACTGGCAGGGGGTCAGCGGAATTTTTACGA
TGCCCGCCAGTTTCTGGTCCCCTTCACTCGAAGAGGTCTTTGCGCGATAC
ACTTCTTTAGTCAATTACTGGGAAGAACATGACCAGTTGCCTGTTTCTGA
GCTGCCTGATATCGCAGCGCAAGCAGGAATCAACTGGATCAAATTTCCGC
TCTGGAATGTTATGGCGTCGACTGACATTCACCATTCCAGTCGGATCGCG
GAGATGCTCGACCAGTGTTCCAACCAAGGTATTACTCCCGTTGGTTTGTT
AAATCATCCCCCTCGGGATTTACGCTCGCAGTTCGCCAAAGACTGGCAGG
GGGTCAGCGGAATTTTTACGATGCCCGCCAGTTTCTGGTCCCCTTCACTC
GAAGAGGTCTTTGCGCGATACACTTCTTTAGTCAATTACTGG
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