mRNA_M-pyrifera_M_contig82576.19301.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82576.19301.1
Unique NamemRNA_M-pyrifera_M_contig82576.19301.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A8E2ARJ5_9APHY (Bromodomain-containing protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2ARJ5_9APHY)

HSP 1 Score: 60.5 bits (145), Expect = 1.350e-8
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   49 MRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQ 276
            ++ AV ++GRV +   MRLPS+ + P YYE++ +P++L ++  +L A AY+S E  + D E  F N + +  R+SQ
Sbjct:   77 VKDAVNKEGRVLSHDFMRLPSKRQYPDYYEIIKRPISLDEIKVQLDAEAYTSLEDVKKDLETCFRNAKRYNIRESQ 152
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BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: UPI000440991C (Bromodomain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI000440991C)

HSP 1 Score: 58.9 bits (141), Expect = 4.310e-8
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   49 MRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQ 276
            +R AV  +GR  +   +RL S+ + P YYE++ QP+AL D+ A+L + AY S EA + D +  F N + +  R+S+
Sbjct:   77 LRDAVDREGRQISYDFLRLVSKRQFPDYYEIIKQPIALDDIKAQLESHAYPSLEALRQDLDTCFKNAKRYNQRESR 152
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BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0V0X1_9BILA (Protein polybromo-1 n=1 Tax=Trichinella sp. T9 TaxID=181606 RepID=A0A0V0V0X1_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.470e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  668 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 726
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BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0Y8H1_TRIPS (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0Y8H1_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.570e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  351 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V0Y7P0_TRIPS (Protein polybromo-1 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0Y7P0_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.630e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  666 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 724
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1K7N6_TRIPS (Protein polybromo-1 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1K7N6_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  679 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 737
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A1Y3EYG9_9BILA (Putative Bromodomain protein n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EYG9_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  620 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 678
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1EMJ4_TRIPS (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1EMJ4_TRIPS)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  665 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 723
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1HBN3_9BILA (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HBN3_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  669 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 727
[Close]
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Match: A0A0V1HBY0_9BILA (Protein polybromo-1 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HBY0_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 6.700e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   97 MRLPSRGEAPQYYEVVSQPLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDS 273
            ++LPSR + P YYEV+ +P+ LQ +C KL+A  Y S EA  +D  LMF N   F D DS
Sbjct:  666 LKLPSRTDYPDYYEVIRKPIDLQKICNKLSAKQYDSVEALVSDFALMFDNACKFNDPDS 724
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82576.19301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E2ARJ5_9APHY1.350e-838.16Bromodomain-containing protein n=1 Tax=Obba rivulo... [more]
UPI000440991C4.310e-838.16Bromodomain-containing protein n=1 Tax=Fomitiporia... [more]
A0A0V0V0X1_9BILA6.470e-849.15Protein polybromo-1 n=1 Tax=Trichinella sp. T9 Tax... [more]
A0A0V0Y8H1_TRIPS6.570e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V0Y7P0_TRIPS6.630e-849.15Protein polybromo-1 n=1 Tax=Trichinella pseudospir... [more]
A0A0V1K7N6_TRIPS6.700e-849.15Protein polybromo-1 n=1 Tax=Trichinella pseudospir... [more]
A0A1Y3EYG9_9BILA6.700e-849.15Putative Bromodomain protein n=1 Tax=Trichinella n... [more]
A0A0V1EMJ4_TRIPS6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V1HBN3_9BILA6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]
A0A0V1HBY0_9BILA6.700e-849.15Protein polybromo-1 (Fragment) n=1 Tax=Trichinella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82576contigM-pyrifera_M_contig82576:23..307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue5e-07
Seed eggNOG ortholog208960.XP_007271139.1
KEGG koko:K11757,ko:K11759
KEGG Pathwayko05225,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016586,GO:0018130,GO:0019438,GO:0022411,GO:0031498,GO:0031974,GO:0031981,GO:0032774,GO:0032984,GO:0032986,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0042393,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0051276,GO:0070013,GO:0070577,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0097659,GO:0140030,GO:0140033,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1904949
EggNOG free text desc.bromo domain
EggNOG OGs22FFA@155619,3A3UU@33154,3P4G8@4751,3VCAD@5204,COG5076@1,KOG1827@2759
COG Functional cat.BK
Best tax levelAgaricomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.5072742-CDS-M-pyrifera_M_contig82576:22..3071622816732.5072742-CDS-M-pyrifera_M_contig82576:22..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82576 23..307 -
1692278146.0087638-CDS-M-pyrifera_M_contig82576:22..3071692278146.0087638-CDS-M-pyrifera_M_contig82576:22..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82576 23..307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82576.19301.1prot_M-pyrifera_M_contig82576.19301.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82576 23..307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82576.19301.1

>prot_M-pyrifera_M_contig82576.19301.1 ID=prot_M-pyrifera_M_contig82576.19301.1|Name=mRNA_M-pyrifera_M_contig82576.19301.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
EERQRLREVLAAAAERMRTAVTEDGRVAAEQLMRLPSRGEAPQYYEVVSQ
PLALQDVCAKLAALAYSSPEAFQNDCELMFANVRAFFDRDSQEVE
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mRNA from alignment at M-pyrifera_M_contig82576:23..307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82576.19301.1 ID=mRNA_M-pyrifera_M_contig82576.19301.1|Name=mRNA_M-pyrifera_M_contig82576.19301.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig82576:23..307- (Macrocystis pyrifera P11B4 male)
GAAGAGCGTCAGCGGCTGCGGGAGGTGCTGGCCGCAGCTGCTGAACGTAT
GCGTACAGCAGTGACGGAGGATGGTCGTGTGGCGGCGGAGCAACTGATGC
GACTGCCTTCACGAGGCGAAGCTCCACAGTATTATGAGGTGGTTTCTCAG
CCGCTGGCTCTTCAAGACGTGTGCGCCAAGCTCGCTGCGCTTGCGTACTC
CTCTCCAGAGGCGTTTCAGAACGACTGCGAGCTGATGTTTGCCAACGTTC
GCGCGTTCTTTGACCGCGACTCGCAAGAAGTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82576:23..307-

>mRNA_M-pyrifera_M_contig82576.19301.1 ID=mRNA_M-pyrifera_M_contig82576.19301.1|Name=mRNA_M-pyrifera_M_contig82576.19301.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig82576:23..307- (Macrocystis pyrifera P11B4 male)
GAAGAGCGTCAGCGGCTGCGGGAGGTGCTGGCCGCAGCTGCTGAACGTAT
GCGTACAGCAGTGACGGAGGATGGTCGTGTGGCGGCGGAGCAACTGATGC
GACTGCCTTCACGAGGCGAAGCTCCACAGTATTATGAGGTGGTTTCTCAG
CCGCTGGCTCTTCAAGACGTGTGCGCCAAGCTCGCTGCGCTTGCGTACTC
CTCTCCAGAGGCGTTTCAGAACGACTGCGAGCTGATGTTTGCCAACGTTC
GCGCGTTCTTTGACCGCGACTCGCAAGAAGTGGAGGAAGAGCGTCAGCGG
CTGCGGGAGGTGCTGGCCGCAGCTGCTGAACGTATGCGTACAGCAGTGAC
GGAGGATGGTCGTGTGGCGGCGGAGCAACTGATGCGACTGCCTTCACGAG
GCGAAGCTCCACAGTATTATGAGGTGGTTTCTCAGCCGCTGGCTCTTCAA
GACGTGTGCGCCAAGCTCGCTGCGCTTGCGTACTCCTCTCCAGAGGCGTT
TCAGAACGACTGCGAGCTGATGTTTGCCAACGTTCGCGCGTTCTTTGACC
GCGACTCGCAAGAAGTGGAG
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