mRNA_M-pyrifera_M_contig109241.1928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109241.1928.1
Unique NamemRNA_M-pyrifera_M_contig109241.1928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A5A8DPA8_CAFRO (CENP-C_C domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DPA8_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 2.680e-25
Identity = 55/89 (61.80%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    7 AAAAFDTPMFISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNTLLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            AAAAFDT  F++G+V L+P   KD E T  C QVF VI CQPGAL VT+   + LLSPGDHFFVPQS  Y L N SKHT A +SF L+K
Sbjct:  797 AAAAFDTDEFVAGTVSLKPLCQKDSESTHGCSQVFCVIACQPGALHVTMGGKSFLLSPGDHFFVPQSTQYRLRNFSKHTLAAISFCLVK 885
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A067CPM9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CPM9_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-12
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   28 PMFISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTI-----------RKNTLLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            P +ISG V+L PGA+K  E   +C QVF VI CQP AL V               +   L PGD F+VP + +Y L NHS   +AE+ F+++K
Sbjct:  473 PTWISGRVLLPPGAVKASESVGSCAQVFVVIGCQPMALEVAFGHPSSPAFDDATASRFTLGPGDEFYVPANNAYFLRNHSTSVEAELRFMILK 565
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BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: T0QG80_SAPDV (Mif2_N domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QG80_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 1.740e-12
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:   28 PMFISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTI-----------RKNTLLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            P +ISG V+L PGA+K  E   +C QVF VI CQP AL V               +   L PGD F+VP + +Y L NHS   +AE+ F+++K
Sbjct:  617 PTWISGRVLLPPGAVKASESVGSCAQVFIVIGCQPMALEVAFGHPSNPTFDDATASRFTLGPGDEFYVPANNAYFLRNHSPTVEAELRFMILK 709
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A484E7D9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7D9_BRELC)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-11
Identity = 38/95 (40.00%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIKEDE 282
            +ISG VVL PGA K+ E     VQ+F V  CQP +L V +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K +E
Sbjct:  448 WISGRVVLPPGAWKEPEGVGQAVQLFYVTGCQPKSLEVALAPETDDDFFTSKFTTHFLLSPGDEFYVPPGNVYYVKNHSTSADCDLRFTILKPEE 542
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A3M6VVH9_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVH9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.280e-11
Identity = 37/92 (40.22%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP AL + +   T             LLSPGD F+VP    Y + NHS+  D ++ F ++K
Sbjct:  533 WISGRVVLPPGAWKEPEGVGQAVQLFYVTGCQPKALELALAPETDDDFFTSKHTTHFLLSPGDEFYVPAGNVYYVKNHSRSADCDLRFTILK 624
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A0P1ACN8_PLAHL (Centromere protein C/Mif2/cnp3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACN8_PLAHL)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-11
Identity = 37/92 (40.22%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP AL + +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K
Sbjct:  516 WISGRVVLPPGAWKEPEGVGQAVQLFFVTGCQPKALELALAPETDDDFFTSKYTTHFLLSPGDEFYVPPGNVYYVKNHSSSADCDLRFTILK 607
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A662XFP5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFP5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.820e-10
Identity = 37/92 (40.22%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP AL + +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K
Sbjct:  494 WISGRVVLPPGAWKEPEGVGAAVQLFYVTGCQPKALELALAPETDDDFFTSKHTTHFLLSPGDEFYVPAGNVYYVKNHSSSADCDLRFTILK 585
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: D0MYH6_PHYIT (Uncharacterized protein n=24 Tax=Phytophthora TaxID=4783 RepID=D0MYH6_PHYIT)

HSP 1 Score: 66.2 bits (160), Expect = 2.490e-10
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP +L + +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K
Sbjct:  507 WISGRVVLPPGAWKEPEGVGQAVQLFYVTGCQPKSLELALGPETDDDFIGSKHTTHFLLSPGDEFYVPAGNVYCVKNHSSSADCDLRFTILK 598
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A0W8DDM9_PHYNI (Nucleoside diphosphate kinase 7 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DDM9_PHYNI)

HSP 1 Score: 66.2 bits (160), Expect = 2.500e-10
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP +L + +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K
Sbjct:  524 WISGRVVLPPGAWKEPEGVGQAVQLFYVTGCQPKSLELALAPETDDDFFTSKYTTHFLLSPGDEFYVPAGNVYYVKNHSSSADCDLRFTILK 615
[Close]
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Match: A0A2P4Y0A4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y0A4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.500e-10
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   34 FISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTIRKNT------------LLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIK 273
            +ISG VVL PGA K+ E     VQ+F V  CQP +L + +   T             LLSPGD F+VP    Y + NHS   D ++ F ++K
Sbjct:  525 WISGRVVLPPGAWKEPEGVGQAVQLFYVTGCQPKSLELALSPETDDDFFTSKHTTHFLLSPGDEFYVPAGNVYFVKNHSSSADCDLRFTILK 616
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109241.1928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A5A8DPA8_CAFRO2.680e-2561.80CENP-C_C domain-containing protein n=4 Tax=Cafeter... [more]
A0A067CPM9_SAPPC1.250e-1241.94Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QG80_SAPDV1.740e-1241.94Mif2_N domain-containing protein n=1 Tax=Saprolegn... [more]
A0A484E7D9_BRELC2.800e-1140.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3M6VVH9_9STRA5.280e-1140.22Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A0P1ACN8_PLAHL9.810e-1140.22Centromere protein C/Mif2/cnp3 n=1 Tax=Plasmopara ... [more]
A0A662XFP5_9STRA1.820e-1040.22Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
D0MYH6_PHYIT2.490e-1039.13Uncharacterized protein n=24 Tax=Phytophthora TaxI... [more]
A0A0W8DDM9_PHYNI2.500e-1039.13Nucleoside diphosphate kinase 7 n=8 Tax=Phytophtho... [more]
A0A2P4Y0A4_9STRA2.500e-1039.13Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109241contigM-pyrifera_M_contig109241:194..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue5.2e-11
Seed eggNOG ortholog112098.XP_008614116.1
KEGG koko:K11497
Hectar predicted targeting categoryother localisation
EggNOG OGs29KWX@1,2RU66@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size342
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.240951-CDS-M-pyrifera_M_contig109241:193..5321622815602.240951-CDS-M-pyrifera_M_contig109241:193..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109241 194..532 -
1692277482.6597662-CDS-M-pyrifera_M_contig109241:193..5321692277482.6597662-CDS-M-pyrifera_M_contig109241:193..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109241 194..532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.2538521-UTR-M-pyrifera_M_contig109241:532..5351622815602.2538521-UTR-M-pyrifera_M_contig109241:532..535Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109241 533..535 -
1692277482.672105-UTR-M-pyrifera_M_contig109241:532..5351692277482.672105-UTR-M-pyrifera_M_contig109241:532..535Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109241 533..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109241.1928.1prot_M-pyrifera_M_contig109241.1928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109241 194..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109241.1928.1

>prot_M-pyrifera_M_contig109241.1928.1 ID=prot_M-pyrifera_M_contig109241.1928.1|Name=mRNA_M-pyrifera_M_contig109241.1928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MAAAAFDTPMFISGSVVLQPGAMKDEEVTQNCVQVFSVITCQPGALAVTI
RKNTLLLSPGDHFFVPQSMSYSLLNHSKHTDAEVSFVLIKEDEGEEGEEG
EEGEGGGEGGGE*
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mRNA from alignment at M-pyrifera_M_contig109241:194..535-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109241.1928.1 ID=mRNA_M-pyrifera_M_contig109241.1928.1|Name=mRNA_M-pyrifera_M_contig109241.1928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig109241:194..535- (Macrocystis pyrifera P11B4 male)
GCCATGGCAGCAGCAGCGTTTGACACTCCCATGTTCATTTCTGGGTCAGT
GGTGTTGCAGCCAGGTGCCATGAAGGATGAGGAAGTGACGCAAAATTGCG
TGCAAGTCTTTTCCGTCATCACCTGTCAACCCGGAGCACTGGCAGTCACC
ATCCGAAAGAACACGCTCCTCCTCTCTCCAGGCGACCACTTCTTCGTGCC
TCAATCCATGAGCTACTCCCTCCTCAACCACTCCAAGCACACTGACGCAG
AAGTGTCCTTCGTTCTCATCAAGGAAGACGAAGGCGAAGAAGGAGAGGAA
GGCGAGGAAGGAGAAGGAGGAGGAGAAGGAGGAGGGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109241:194..535-

>mRNA_M-pyrifera_M_contig109241.1928.1 ID=mRNA_M-pyrifera_M_contig109241.1928.1|Name=mRNA_M-pyrifera_M_contig109241.1928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig109241:194..535- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGCAGCGTTTGACACTCCCATGTTCATTTCTGGGTCAGTGGT
GTTGCAGCCAGGTGCCATGAAGGATGAGGAAGTGACGCAAAATTGCGTGC
AAGTCTTTTCCGTCATCACCTGTCAACCCGGAGCACTGGCAGTCACCATC
CGAAAGAACACGCTCCTCCTCTCTCCAGGCGACCACTTCTTCGTGCCTCA
ATCCATGAGCTACTCCCTCCTCAACCACTCCAAGCACACTGACGCAGAAG
TGTCCTTCGTTCTCATCAAGGAAGACGAAGGCGAAGAAGGAGAGGAAGGC
GAGGAAGGAGAAGGAGGAGGAGAAGGAGGAGGGGAGTGAATGGCAGCAGC
AGCGTTTGACACTCCCATGTTCATTTCTGGGTCAGTGGTGTTGCAGCCAG
GTGCCATGAAGGATGAGGAAGTGACGCAAAATTGCGTGCAAGTCTTTTCC
GTCATCACCTGTCAACCCGGAGCACTGGCAGTCACCATCCGAAAGAACAC
GCTCCTCCTCTCTCCAGGCGACCACTTCTTCGTGCCTCAATCCATGAGCT
ACTCCCTCCTCAACCACTCCAAGCACACTGACGCAGAAGTGTCCTTCGTT
CTCATCAAGGAAGACGAAGGCGAAGAAGGAGAGGAAGGCGAGGAAGGAGA
AGGAGGAGGAGAAGGAGGAGGGGAGTGA
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