mRNA_M-pyrifera_M_contig8192.19166.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI) HSP 1 Score: 328 bits (842), Expect = 1.870e-105 Identity = 223/419 (53.22%), Postives = 251/419 (59.90%), Query Frame = 1 Query: 1 QIMDLCLLRNDPTGSLRYSQEEGLPKSTIERLPQTRYKKPTARVA--KGGK------GHKPKHGEAS-----GEVAAGDVEGGMGAGTAAGVPGPAGPRTAAVAGAVPGE----RDSTADMCAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKSCCDRALSSLSARVGLHLVAPTTIRFSSSRRTYTNEDVQQAMGPALPPSYGHSEMDYVGSMVAPLPGEGDAEGXXXXXXXXXV------------------AGGGSV-GARGTV----QEEERQGSIVAQPASAPSFIVVPRDPSFGAEGGXXXXXXXXGSINAGGKGSARQERTTREMFGSRAGSGTME--------------EKEETGAGGVASVGDRRRG----MSGGRLRDVVFGGDTPEFREA 1083 ++MDLCLLRNDPTGSLRYSQEEGL K +IERLPQTRYK+P + A KG K G KP EA+ G V D+ G G+ TAA P+TA VAGA GE RDST DMCAICLVEYETGDELR+IPGC H FHK+CIDPWLETKAVCAYCKA VEAR++CCDR S+S R+G++LVAPTTIRFSSSRRTYTNEDVQ AMGP LP SYGHSEMDYVGS VAP D E X AG GS RG + Q + QGSIV QPASAPS++VVPR+ S G +G G AG +TRE+ S A + T E EKEE VA + RRG S GR VVFGG+T EFREA Sbjct: 82 KVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGTAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAA-------PKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAXXXXXXXXXXXXXXFXXXXPAGSGSTRSTRGAIVLPDQGGQPQGSIVVQPASAPSYVVVPREYSLGGDGIDEEYPGNGGEGLAGS--------STRELASSAARASTTEGLPDDVAQATDATEEKEEI----VAEAAEERRGSHKGFSDGR-GGVVFGGNTEEFREA 480
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE) HSP 1 Score: 319 bits (817), Expect = 1.870e-99 Identity = 217/408 (53.19%), Postives = 244/408 (59.80%), Query Frame = 1 Query: 1 QIMDLCLLRNDPTGSLRYSQEEGLPKSTIERLPQTRYKKPTARVA--KGGK------GHKPKHGEASGEVAAGDVEGGMGAGTAAGVPGPAGPRTAAVAGAVPGER----DSTADMCAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKSCCDRALSSLSARVGLHLVAPTTIRFSSSRRTYTNEDVQQAMGPALPPSYGHSEMDYVGSMVAPLPGEGDAE---GXXXXXXXXXVA--------GGGSVGARGTVQE------------EERQGSIVAQPASAPSFIVVPRDPSFGAEGGXXXXXXXXGSINAGGKG-------SARQERTTREMFGSRAGSGTMEEKEETGAGGVASVGDRRRG----MSGGRLRDVVFGGDTPEFREAE 1086 ++MDLCLLRNDPTGSLRYSQEEGL K +IERLP+TRYK+P + A KGGK G KP EA+ G V G G AG G P+TA V A GER DST DMCAICLVEYETGDELR+IPGC H FHK+CIDPWLETKAVCAYCKA VEAR++CCDR S+S R+G++LVAPTTIRFSSSRRTYTNEDVQ AMGP LP SYGHSEMDYVGS VAP D E G A GGG G+ + + ++GSIV QPASAPS++VVPR+ S G GG G G SAR T R + EEKEE VA + RRG S GR VVFGG+T EFREAE Sbjct: 275 KVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGA--PQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGVEAEATTPITADAAPGQAFGGGGPARSGSTRSTRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLG--GGIDNEHPGNGGEGPVGSSMRELTSSSARASATERPPDEVARATDATEEKEEI----VAEAPEERRGSQKGFSDGR-GGVVFGGNTEEFREAE 673
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.940e-14 Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 265 AVAGAVPGERDSTAD-MCAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKV 450 A G V G R+ D MCAICL ++E GD+LRV+P C H +HK C+DPWLETKA+C CK +V Sbjct: 234 AAMGDVEGGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A836C7Z7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z7_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.800e-13 Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 289 ERDSTADMCAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKSCCDRALSSLSA 498 E CAICL E+ETGD LRV+P C HH+HK C+DPWLE++ +C CK V + +LSS+ A Sbjct: 113 ENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICA 182
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A0B6XUB7_9EUPU (RING-type domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XUB7_9EUPU) HSP 1 Score: 70.9 bits (172), Expect = 7.140e-12 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 Query: 304 ADMCAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKS 465 A C ICL +YETGDE RV+P C+H FHK C+D WL+T A C C+++V + S Sbjct: 29 APQCNICLCDYETGDEKRVLP-CKHDFHKHCVDQWLKTNATCPICRSEVRMKDS 81
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA) HSP 1 Score: 76.3 bits (186), Expect = 1.230e-11 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 Query: 313 CAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVE 453 CA+CL+E+E GD+LR++P C H FH +CIDPWLET+ C C+A +E Sbjct: 128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A8I6WLA5_HORVV (RING-type domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WLA5_HORVV) HSP 1 Score: 70.5 bits (171), Expect = 5.180e-11 Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 Query: 313 CAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKS 465 CA+CL EY GDELRV+PGC H FH+ C+D WL + C C+ ++R S Sbjct: 91 CAVCLAEYADGDELRVLPGCAHAFHRRCVDQWLRRRPSCPLCRTSPQSRAS 141
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A3B6KCS5_WHEAT (RING-type domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6KCS5_WHEAT) HSP 1 Score: 70.5 bits (171), Expect = 6.220e-11 Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 Query: 313 CAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEARKS 465 CA+CL EY GDELRV+PGC H FH+ C+D WL + C C+ ++R S Sbjct: 91 CAVCLAEYADGDELRVLPGCAHAFHRRCVDQWLRRRPSCPLCRTSPQSRAS 141
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A0A3B6MIZ0_WHEAT (RING-type domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6MIZ0_WHEAT) HSP 1 Score: 70.5 bits (171), Expect = 6.640e-11 Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 Query: 313 CAICLVEYETGDELRVIPGCQHHFHKDCIDPWLETKAVCAYCKAKVEAR 459 CA+CL EY GDELRV+PGC H FH+ C+D WL + C C+A ++R Sbjct: 94 CAVCLAEYADGDELRVMPGCAHTFHRRCVDQWLRRRPSCPLCRASSQSR 142
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Match: A9SWN4_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SWN4_PHYPA) HSP 1 Score: 67.4 bits (163), Expect = 8.120e-11 Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 313 CAICLVEYETGDELRVIPGCQHHFHKDCIDPWL-ETKAVCAYCKAKVEARKS 465 C ICLVEYE GDE+RV+P CQH +HKDC+D WL E VC C+ V KS Sbjct: 2 CHICLVEYEDGDEIRVLP-CQHEYHKDCVDKWLKEVHRVCPLCRGDVCDLKS 52 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8192.19166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8192.19166.1 >prot_M-pyrifera_M_contig8192.19166.1 ID=prot_M-pyrifera_M_contig8192.19166.1|Name=mRNA_M-pyrifera_M_contig8192.19166.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=381bp MDLCLLRNDPTGSLRYSQEEGLPKSTIERLPQTRYKKPTARVAKGGKGHKback to top mRNA from alignment at M-pyrifera_M_contig8192:8547..12033- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8192.19166.1 ID=mRNA_M-pyrifera_M_contig8192.19166.1|Name=mRNA_M-pyrifera_M_contig8192.19166.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3487bp|location=Sequence derived from alignment at M-pyrifera_M_contig8192:8547..12033- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8192:8547..12033- >mRNA_M-pyrifera_M_contig8192.19166.1 ID=mRNA_M-pyrifera_M_contig8192.19166.1|Name=mRNA_M-pyrifera_M_contig8192.19166.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2286bp|location=Sequence derived from alignment at M-pyrifera_M_contig8192:8547..12033- (Macrocystis pyrifera P11B4 male)back to top |