mRNA_M-pyrifera_M_contig81815.19149.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81815.19149.1
Unique NamemRNA_M-pyrifera_M_contig81815.19149.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI001F08BC6A (methyl-accepting chemotaxis protein n=1 Tax=Tunicatimonas sp. TK19036 TaxID=2867963 RepID=UPI001F08BC6A)

HSP 1 Score: 360 bits (925), Expect = 3.480e-117
Identity = 166/309 (53.72%), Postives = 245/309 (79.29%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGY-GKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMV-GQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISNMNNILGDINESSTLLAASSEQMLTKSDQMQGTTQEVASAIGQM 921
            PDGTI+  N+N++KTLGY  +ED++G+HH++FC+  Y+ S+ YK+FW++LA G+ QSGEF+R +  G E+WINA+YTPIK+D G V KVIKIA++IT+M+ SR+QGE ++AAVDTGWA IEFEPDGTI+  N+N++ T+G++ +  + GQHHR+FC+  Y +S+EY +FW+DL SG VQ+GE+ R +  G+++W+ A+YTP+++E G V K+IKIAADI+++K P++ V  II DMA GDLTQ+F+L ++GY  +MG+ALN+AI N+N +L +I ++++ +A SS  ML KS+ ++  T EVASAI QM
Sbjct:   83 PDGTIITANDNFVKTLGYDSQEDVIGKHHKVFCEESYAQSAVYKKFWEDLAVGQTQSGEFKRIRRDGAEVWINAAYTPIKNDAGQVVKVIKIASDITEMMASRVQGENLQAAVDTGWAYIEFEPDGTIISANKNFLSTMGFENEAEIRGQHHRIFCESLYTSSNEYAKFWQDLGSGLVQNGEYLRVRKDGKQVWLQAAYTPVRDENGEVSKIIKIAADISDVKFPVMAVSKIIDDMAQGDLTQKFDLTAEGYAQQMGDALNVAIENLNALLSNIGKNASFVANSSNSMLEKSESIRNNTNEVASAIAQM 391          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI001F279726 (PAS domain S-box protein n=1 Tax=Fulvivirga sp. SW1-E11 TaxID=2904247 RepID=UPI001F279726)

HSP 1 Score: 343 bits (880), Expect = 4.400e-109
Identity = 159/288 (55.21%), Postives = 225/288 (78.12%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGK-EDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGY-DKQNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISNMNNILGDINESSTLLAASSEQM 858
            PDGTI+  N+N++  LGY   E++ G+HHR+FCD EY+ S EYKQFW  L  GK+Q+GEF+R    G+ +WINASYTP++D EG V KVIKIA++ITDMV +R QGE +K AVD GWA IEFEP+GT++  NEN++KT+GY D+  + G+HHR+FCD +Y +++EY QFW+DLA+G  ++GE+ R +  G+ +W+ A+YTP++N +G + KVIKIAADI+ +K+P+L V  II +MA GDLTQQF+ +SDGYV EMG+ALN+AI N+N +LG I+ES+  +A++++ M
Sbjct:  202 PDGTIITANQNFLDVLGYSTPEEIAGKHHRIFCDKEYAESHEYKQFWNQLGAGKIQAGEFKRITAMGQFVWINASYTPVRDAEGRVVKVIKIASDITDMVEARKQGEYIKKAVDAGWAYIEFEPNGTVVSCNENFLKTMGYKDQSEIEGEHHRIFCDSQYTSTNEYTQFWRDLANGMNKNGEYARVRKDGKLVWLQAAYTPVRNTKGDIEKVIKIAADISEVKLPVLAVSKIIGEMAQGDLTQQFSEDSDGYVKEMGDALNVAIENLNALLGTIDESARQVASAADNM 489          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI001923CC50 (PAS domain S-box protein n=1 Tax=Fulvivirga sediminis TaxID=2803949 RepID=UPI001923CC50)

HSP 1 Score: 343 bits (879), Expect = 6.050e-109
Identity = 160/288 (55.56%), Postives = 223/288 (77.43%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGK-EDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGY-DKQNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISNMNNILGDINESSTLLAASSEQM 858
            PDGTI+  N+N++  LGY   E++ G+HHR+FC+ EY+ S EYKQ W  LA GK+QSGEF+R  + G  +WINASYTP++D EG V KVIKIA++ITDMV +R QGE +K AVD GWA IEFEP GT++  N+N++KT GY D+  + G+HHR+FCD +Y AS EY QFWKDLA+G  ++GE+ R +  G+ +W+ A+YTP++N +G + KVIKIAADI+ +K+P+LEV  II +MA GDLT++F+ +SDGYV EMG+ALN+AI N+N +LG I+ES+  +A++++ M
Sbjct:  201 PDGTIITANQNFLDVLGYSTPEEIAGKHHRIFCEKEYAESYEYKQLWNQLAAGKIQSGEFKRITSMGNPVWINASYTPVRDVEGRVVKVIKIASDITDMVEARTQGENIKKAVDAGWAYIEFEPAGTVVGCNQNFLKTFGYKDQSEIEGEHHRIFCDSKYTASHEYTQFWKDLANGINKNGEYARIRKDGKLIWLQAAYTPVRNAKGEIEKVIKIAADISEVKLPVLEVSKIIGEMAQGDLTKKFDFDSDGYVKEMGDALNVAIENLNALLGTIDESARQVASAADNM 488          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI001F3C1310 (PAS domain S-box protein n=1 Tax=Fulvivirga sp. W9P-11 TaxID=2904246 RepID=UPI001F3C1310)

HSP 1 Score: 342 bits (876), Expect = 1.610e-108
Identity = 161/286 (56.29%), Postives = 220/286 (76.92%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGK-EDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMV-GQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISNMNNILGDINESSTLLAASSE 852
            PDGTIL  N N++  LGYG  E++ G+HHR+FC+ EY  S EYK+FW  LA GK+Q GEF+R    G+++WINASYTP+KD    V KVIKIA++ITDMV +R QGE +K +VDTGWA IEFEPDGTI   N+N++  +GY   + + G+HHR+FCD  Y ++ EYN FW+DL SG  ++GE++R  N G+++W+ A+YTPIKN +G+V KVIKIAADI+ +K+P+LEV  II DMA GDLTQ FN+N++GYV EMG+ALN+AI N+N +LG I+ES+  +A++++
Sbjct:  199 PDGTILTANANFLDVLGYGSVEEIEGKHHRIFCEDEYVNSHEYKKFWSELAAGKIQDGEFKRITALGQDVWINASYTPVKDASNKVIKVIKIASDITDMVEARRQGENIKKSVDTGWAYIEFEPDGTITSCNQNFLDAMGYMSVSEIEGKHHRIFCDPSYASTKEYNNFWRDLGSGISKNGEYERVTNDGKKVWLQAAYTPIKNAKGIVEKVIKIAADISEVKLPVLEVSKIIGDMAQGDLTQSFNMNAEGYVKEMGDALNVAIENLNALLGTIDESAQQVASAAD 484          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI00192D33EA (PAS domain S-box protein n=1 Tax=Fulvivirga marina TaxID=2494733 RepID=UPI00192D33EA)

HSP 1 Score: 321 bits (823), Expect = 6.700e-97
Identity = 150/265 (56.60%), Postives = 204/265 (76.98%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDK-QNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISN 792
            P+GTIL VNEN+ +TL Y  E++VG HH++F D  Y+ S++YK+FWK+LANG+VQ+GEF R    GE +W+NASYTP+ D EG+V KVIKIA +ITDMV++R +GE ++AAVDTGWA IEF+ DGTI++ N+ ++ TLGY+  + +  QHH +F D  Y +S EY +FWKDLA G+VQ+GEF R K  GE  W+ A+YTPIK++ G V +VIKIA DI+ IK+P+L V +I+  +A GDLT +FN+++DGYV EMGEALN A+ N
Sbjct:  816 PNGTILSVNENFARTLNYSIEELVGNHHQIFVDDTYAKSAQYKKFWKDLANGEVQAGEFARITKNGELVWLNASYTPVTDSEGHVIKVIKIANDITDMVDARKKGENIQAAVDTGWAYIEFDIDGTIIEANDAFLNTLGYNNIKEVKNQHHSIFVDSTYASSMEYTKFWKDLARGEVQNGEFARIKKNGETAWLQAAYTPIKDDNGQVARVIKIATDISKIKMPVLAVSDIVNKLAEGDLTNEFNMDADGYVKEMGEALNKALEN 1080          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI001574BF50 (PAS domain-containing methyl-accepting chemotaxis protein n=1 Tax=Leisingera sp. ANG59 TaxID=2675221 RepID=UPI001574BF50)

HSP 1 Score: 259 bits (662), Expect = 2.670e-78
Identity = 120/234 (51.28%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    4 DGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMA 705
            DGTIL  NEN++ T+GY  ++++GQHH MFCD  YS+SSEY++FW +LA G+  +GE++RF  GGEE+WINASY PI D EG  +KV+K A N+T+      + +   AA+    A IEFE DGTIL  N+N++ T+GY    + GQHHRMFCD EY +S +Y +FW DLASG+  +GE++RF  GG+E+WINASY P+ N +G  +KV+K A +IT  K    EV  I T  A
Sbjct:  160 DGTILAANENFLATVGYSLDEILGQHHSMFCDPAYSSSSEYRRFWADLAAGEFSAGEYKRFGKGGEEVWINASYNPIFDAEGKPFKVVKFATNVTEEKLRTAEQDGKMAAISRAQAMIEFELDGTILTANQNFLATVGYSLDEIRGQHHRMFCDPEYTSSPDYQKFWSDLASGEFSAGEYKRFGKGGKEVWINASYNPVFNADGKPFKVVKFATNITAEKQVAQEVTRIATRFA 393          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: UPI000E6C2FB9 (PAS domain-containing methyl-accepting chemotaxis protein n=2 Tax=Reichenbachiella TaxID=156993 RepID=UPI000E6C2FB9)

HSP 1 Score: 254 bits (649), Expect = 5.500e-77
Identity = 110/219 (50.23%), Postives = 159/219 (72.60%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQ-NMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADIT 654
            P G IL  N N++KTLGY  ++++GQHH++FC  +Y  S  YKQFWK LA GK  SGEF R K  GE +W+ ASYTP+ D EG + K++KIA  IT+MV SR++   MK+A+DTGWA IEF+P G I++ N+N+++T GY  Q  ++ +HHR+FC+ + + SS Y  FW++LA G ++SGE++R    G+E+W+ ASYTP+++ +  V KVIKIA++IT
Sbjct:   30 PSGVILNANNNFLKTLGYTLDEVIGQHHKIFCTDQYLNSINYKQFWKELAAGKSNSGEFNRIKKTGESIWLQASYTPVFDKEGRIEKIVKIAVEITEMVTSRLENSWMKSAIDTGWAMIEFDPTGHIINANDNFLQTFGYTTQPEIIAKHHRIFCETKLINSSAYLDFWEELAQGHIKSGEYKRLDKNGKEVWLYASYTPVRDAQNKVVKVIKIASNIT 248          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: A0A238JFW8_9RHOB (Biofilm dispersion protein BdlA n=1 Tax=Pelagimonas phthalicica TaxID=1037362 RepID=A0A238JFW8_9RHOB)

HSP 1 Score: 258 bits (660), Expect = 6.060e-77
Identity = 124/243 (51.03%), Postives = 164/243 (67.49%), Query Frame = 1
Query:    4 DGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMA--AGDLTQQ 726
            DGTI+  NEN+  T+GY  E++ G+HHR+FCD  Y+ S EY+QFW +LA+G+  +GEF+RF   G+E+WINASY PI D +GN YKV+K A NIT+      + +   AA+    A IEFE DGTI+  NEN+  T+GY    + GQHHRMFCD EY AS +Y +FW DLASG+  +GE++RF  GG+E+WINASY PI + +G  YKV+K A DIT  K    EV  I  + A  + DL+ Q
Sbjct:  282 DGTIITANENFTATVGYSLEEIQGKHHRIFCDPTYANSPEYRQFWADLASGQFSAGEFKRFGKSGDEIWINASYNPIFDADGNPYKVVKFATNITEEKMRSAEQDGKMAAISRAQAMIEFELDGTIITANENFTATVGYSLDEIKGQHHRMFCDPEYTASPDYRKFWADLASGEFSAGEYKRFGKGGKEVWINASYNPIFDADGNPYKVVKFATDITAAKDVEKEVTRIANEFAGMSTDLSDQ 524          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: A0A7Y6YS88_9RHOB (PAS domain S-box protein n=7 Tax=Rhodobacterales TaxID=204455 RepID=A0A7Y6YS88_9RHOB)

HSP 1 Score: 257 bits (657), Expect = 1.600e-76
Identity = 119/235 (50.64%), Postives = 159/235 (67.66%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILEVKNIITDMA 705
            PDG I   NEN++ T+GY  +++VGQHHRMFCD +Y +S+EY +FW +LA G+  +GEF+RF  GG E+WINASY PI D  G  +KV+K A+NIT+      + +   AA+    A IEFE DGTIL  N+N++ T+GY    + GQHHRMFCD EY +S EY +FW DLA+G+  +GE++RF  GG E+WINASY P+ N +G  +KV+K A +IT  K    EV  I T  A
Sbjct:  280 PDGKITNANENFLATVGYSLDEIVGQHHRMFCDPDYVSSAEYSKFWADLAAGEYAAGEFKRFGKGGAEVWINASYNPILDAGGKTFKVVKFASNITEEKQRTAEQDGKMAAISRAQAMIEFELDGTILTANQNFLATVGYSLDEIRGQHHRMFCDPEYTSSPEYRKFWADLAAGEFSAGEYKRFGKGGNEVWINASYNPVFNADGKPFKVVKFATNITAEKQVAQEVTRIATQFA 514          
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Match: A0A2A3UGT2_9SPHI (Uncharacterized protein n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A2A3UGT2_9SPHI)

HSP 1 Score: 261 bits (668), Expect = 3.050e-76
Identity = 125/272 (45.96%), Postives = 183/272 (67.28%), Query Frame = 1
Query:    1 PDGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLANGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVNSRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDK-QNMVGQHHRMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPIKNEEGVVYKVIKIAADITNIKVPILE-------VKNIITDMAAGDLTQQFNLNSDGYVAEMGEALNLAISN 792
            P+G IL  N N++K +GY  E++ G+HHR+F D  YS + +Y +FW +L+NGK  + +F+R    G+E+W+ A Y+P+KD+ G V KVIKIA +IT    + +  + +K+ VD  +A IEF+  GTI+D NEN++ TLGY   +++VG HH MF D E   SSEY +FW DL +G  Q G+F+R    G+E+WI A+YTP+KN+EG V KVIKIA DIT  K   LE       VK +++ +A+GDLTQ++ ++S G +  MG++LN A +N
Sbjct:  501 PNGNILTANTNFLKAVGYSLEEIKGKHHRIFVDKNYSNTPDYSRFWMDLSNGKENNDQFKRITRSGDEIWLQAVYSPVKDNTGKVIKVIKIATDITLQKIAALNAQGLKSTVDASFAEIEFDTKGTIIDANENFVSTLGYSNAKDLVGNHHSMFIDSETKRSSEYKKFWDDLGNGITQQGQFKRMTRDGKEVWIQAAYTPVKNDEGKVVKVIKIAIDITAQKEATLETEKSTIEVKRVVSALASGDLTQRYAIDSKGELKMMGDSLNTATAN 772          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81815.19149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F08BC6A3.480e-11753.72methyl-accepting chemotaxis protein n=1 Tax=Tunica... [more]
UPI001F2797264.400e-10955.21PAS domain S-box protein n=1 Tax=Fulvivirga sp. SW... [more]
UPI001923CC506.050e-10955.56PAS domain S-box protein n=1 Tax=Fulvivirga sedimi... [more]
UPI001F3C13101.610e-10856.29PAS domain S-box protein n=1 Tax=Fulvivirga sp. W9... [more]
UPI00192D33EA6.700e-9756.60PAS domain S-box protein n=1 Tax=Fulvivirga marina... [more]
UPI001574BF502.670e-7851.28PAS domain-containing methyl-accepting chemotaxis ... [more]
UPI000E6C2FB95.500e-7750.23PAS domain-containing methyl-accepting chemotaxis ... [more]
A0A238JFW8_9RHOB6.060e-7751.03Biofilm dispersion protein BdlA n=1 Tax=Pelagimona... [more]
A0A7Y6YS88_9RHOB1.600e-7650.64PAS domain S-box protein n=7 Tax=Rhodobacterales T... [more]
A0A2A3UGT2_9SPHI3.050e-7645.96Uncharacterized protein n=1 Tax=Sphingobacteriacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81815contigM-pyrifera_M_contig81815:3..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score249.6
Seed ortholog evalue1.9e-63
Seed eggNOG ortholog796620.VIBC2010_10572
Preferred namemcpA
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAS fold
EggNOG OGs1MU9B@1224,1RMH0@1236,1XWMA@135623,COG0840@1,COG0840@2,COG2202@1,COG2202@2
COG Functional cat.T
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Exons1
Model size921
Cds size921
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.6622615-CDS-M-pyrifera_M_contig81815:2..9231622816725.6622615-CDS-M-pyrifera_M_contig81815:2..923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81815 3..923 +
1692278142.5924087-CDS-M-pyrifera_M_contig81815:2..9231692278142.5924087-CDS-M-pyrifera_M_contig81815:2..923Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81815 3..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81815.19149.1prot_M-pyrifera_M_contig81815.19149.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81815 3..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81815.19149.1

>prot_M-pyrifera_M_contig81815.19149.1 ID=prot_M-pyrifera_M_contig81815.19149.1|Name=mRNA_M-pyrifera_M_contig81815.19149.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=307bp
PDGTILEVNENWIKTLGYGKEDMVGQHHRMFCDMEYSASSEYKQFWKNLA
NGKVQSGEFQRFKNGGEELWINASYTPIKDDEGNVYKVIKIAANITDMVN
SRIQGEAMKAAVDTGWASIEFEPDGTILDTNENWIKTLGYDKQNMVGQHH
RMFCDVEYVASSEYNQFWKDLASGKVQSGEFQRFKNGGEELWINASYTPI
KNEEGVVYKVIKIAADITNIKVPILEVKNIITDMAAGDLTQQFNLNSDGY
VAEMGEALNLAISNMNNILGDINESSTLLAASSEQMLTKSDQMQGTTQEV
ASAIGQM
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mRNA from alignment at M-pyrifera_M_contig81815:3..923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81815.19149.1 ID=mRNA_M-pyrifera_M_contig81815.19149.1|Name=mRNA_M-pyrifera_M_contig81815.19149.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=921bp|location=Sequence derived from alignment at M-pyrifera_M_contig81815:3..923+ (Macrocystis pyrifera P11B4 male)
CCAGACGGTACAATCCTTGAAGTCAACGAAAATTGGATAAAAACCCTTGG CTACGGCAAAGAAGACATGGTAGGTCAGCATCACCGAATGTTCTGTGACA TGGAATACTCTGCCTCTTCTGAGTACAAACAATTTTGGAAGAACCTGGCG AACGGAAAAGTACAGTCCGGTGAATTTCAAAGGTTCAAAAATGGAGGGGA GGAACTATGGATCAATGCCAGCTACACCCCGATCAAGGATGACGAGGGCA ATGTATATAAGGTGATCAAAATTGCTGCTAACATAACTGATATGGTGAAC TCCCGAATCCAGGGAGAAGCAATGAAAGCCGCAGTAGATACAGGTTGGGC TTCTATAGAATTCGAGCCCGATGGCACCATTCTGGACACCAATGAAAACT GGATAAAAACCCTTGGTTATGACAAGCAGAACATGGTAGGTCAGCATCAC CGAATGTTCTGTGACGTGGAATACGTAGCCTCTTCCGAATACAATCAATT TTGGAAAGATCTAGCGAGTGGGAAAGTGCAATCTGGCGAATTTCAAAGAT TTAAAAACGGTGGGGAGGAACTGTGGATCAATGCGAGCTATACCCCGATC AAGAATGAAGAAGGCGTAGTGTATAAAGTCATTAAAATTGCTGCCGACAT CACCAATATCAAAGTACCGATTCTTGAGGTGAAAAATATCATAACAGATA TGGCAGCCGGAGATCTAACGCAACAGTTCAATTTGAACTCTGACGGATAT GTAGCAGAAATGGGAGAGGCCCTAAACCTTGCAATATCTAATATGAACAA CATATTGGGGGACATCAATGAGAGCAGTACTTTACTAGCAGCGAGTTCTG AGCAAATGTTGACCAAAAGCGATCAGATGCAGGGAACTACTCAGGAAGTA GCTTCAGCTATCGGCCAAATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81815:3..923+

>mRNA_M-pyrifera_M_contig81815.19149.1 ID=mRNA_M-pyrifera_M_contig81815.19149.1|Name=mRNA_M-pyrifera_M_contig81815.19149.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1842bp|location=Sequence derived from alignment at M-pyrifera_M_contig81815:3..923+ (Macrocystis pyrifera P11B4 male)
CCAGACGGTACAATCCTTGAAGTCAACGAAAATTGGATAAAAACCCTTGG
CTACGGCAAAGAAGACATGGTAGGTCAGCATCACCGAATGTTCTGTGACA
TGGAATACTCTGCCTCTTCTGAGTACAAACAATTTTGGAAGAACCTGGCG
AACGGAAAAGTACAGTCCGGTGAATTTCAAAGGTTCAAAAATGGAGGGGA
GGAACTATGGATCAATGCCAGCTACACCCCGATCAAGGATGACGAGGGCA
ATGTATATAAGGTGATCAAAATTGCTGCTAACATAACTGATATGGTGAAC
TCCCGAATCCAGGGAGAAGCAATGAAAGCCGCAGTAGATACAGGTTGGGC
TTCTATAGAATTCGAGCCCGATGGCACCATTCTGGACACCAATGAAAACT
GGATAAAAACCCTTGGTTATGACAAGCAGAACATGGTAGGTCAGCATCAC
CGAATGTTCTGTGACGTGGAATACGTAGCCTCTTCCGAATACAATCAATT
TTGGAAAGATCTAGCGAGTGGGAAAGTGCAATCTGGCGAATTTCAAAGAT
TTAAAAACGGTGGGGAGGAACTGTGGATCAATGCGAGCTATACCCCGATC
AAGAATGAAGAAGGCGTAGTGTATAAAGTCATTAAAATTGCTGCCGACAT
CACCAATATCAAAGTACCGATTCTTGAGGTGAAAAATATCATAACAGATA
TGGCAGCCGGAGATCTAACGCAACAGTTCAATTTGAACTCTGACGGATAT
GTAGCAGAAATGGGAGAGGCCCTAAACCTTGCAATATCTAATATGAACAA
CATATTGGGGGACATCAATGAGAGCAGTACTTTACTAGCAGCGAGTTCTG
AGCAAATGTTGACCAAAAGCGATCAGATGCAGGGAACTACTCAGGAAGTA
GCTTCAGCTATCGGCCAAATGCCAGACGGTACAATCCTTGAAGTCAACGA
AAATTGGATAAAAACCCTTGGCTACGGCAAAGAAGACATGGTAGGTCAGC
ATCACCGAATGTTCTGTGACATGGAATACTCTGCCTCTTCTGAGTACAAA
CAATTTTGGAAGAACCTGGCGAACGGAAAAGTACAGTCCGGTGAATTTCA
AAGGTTCAAAAATGGAGGGGAGGAACTATGGATCAATGCCAGCTACACCC
CGATCAAGGATGACGAGGGCAATGTATATAAGGTGATCAAAATTGCTGCT
AACATAACTGATATGGTGAACTCCCGAATCCAGGGAGAAGCAATGAAAGC
CGCAGTAGATACAGGTTGGGCTTCTATAGAATTCGAGCCCGATGGCACCA
TTCTGGACACCAATGAAAACTGGATAAAAACCCTTGGTTATGACAAGCAG
AACATGGTAGGTCAGCATCACCGAATGTTCTGTGACGTGGAATACGTAGC
CTCTTCCGAATACAATCAATTTTGGAAAGATCTAGCGAGTGGGAAAGTGC
AATCTGGCGAATTTCAAAGATTTAAAAACGGTGGGGAGGAACTGTGGATC
AATGCGAGCTATACCCCGATCAAGAATGAAGAAGGCGTAGTGTATAAAGT
CATTAAAATTGCTGCCGACATCACCAATATCAAAGTACCGATTCTTGAGG
TGAAAAATATCATAACAGATATGGCAGCCGGAGATCTAACGCAACAGTTC
AATTTGAACTCTGACGGATATGTAGCAGAAATGGGAGAGGCCCTAAACCT
TGCAATATCTAATATGAACAACATATTGGGGGACATCAATGAGAGCAGTA
CTTTACTAGCAGCGAGTTCTGAGCAAATGTTGACCAAAAGCGATCAGATG
CAGGGAACTACTCAGGAAGTAGCTTCAGCTATCGGCCAAATG
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