mRNA_M-pyrifera_M_contig81548.19082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81548.19082.1
Unique NamemRNA_M-pyrifera_M_contig81548.19082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A356KHP6_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KHP6_9BACT)

HSP 1 Score: 175 bits (444), Expect = 4.320e-52
Identity = 83/123 (67.48%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 TWMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERLAL 369
            TWMPELV  AGGEALVT PG HAPTL R  LA LRPD+VL+KPCGF LA++  E +     L GL WPAL  GRVY+ADGNA+FNRPGPRL+ES EILAAC+HPE   D AERHA +FER+ +
Sbjct:  187 TWMPELVTAAGGEALVTEPGQHAPTLTRGDLAGLRPDLVLIKPCGFPLAQTRRELSAFLEGLSGLEWPALNTGRVYVADGNAYFNRPGPRLVESAEILAACLHPEACADLAERHAGAFERVQV 309          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A2D5XNB1_9BACT (Fe/B12 periplasmic-binding domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5XNB1_9BACT)

HSP 1 Score: 169 bits (429), Expect = 1.010e-49
Identity = 81/120 (67.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            WMPELV  AGG  LVT+ GDHAPTLD +AL  L PD VL+KPCGF LAR+ AE + +   LD L W A + GRVYLADGNAFFNRPGPRL ESLEI+AACVHPE+F D AE H++ +ERL
Sbjct:  201 WMPELVELAGGVPLVTAAGDHAPTLDEEALRELAPDTVLIKPCGFSLARTRAEASALCALLDRLGWKAWQEGRVYLADGNAFFNRPGPRLAESLEIMAACVHPELFEDMAEAHSSDYERL 320          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A800MFH4_9BACT (Cobalamin-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MFH4_9BACT)

HSP 1 Score: 167 bits (423), Expect = 7.470e-49
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            WMPELV  AGG  LVT+ GDHAPTLD  AL  L PDVVL+KPCGF+LAR+ AE + +   LD L W A + GRV+LADGNAFFNRPGPRL ESLEI+AACVHPE+F D AE H++ +ERL
Sbjct:  198 WMPELVELAGGVPLVTAAGDHAPTLDEDALRELVPDVVLIKPCGFNLARTRAEASALCALLDRLGWKAWQEGRVFLADGNAFFNRPGPRLAESLEIMAACVHPELFVDMAEVHSSDYERL 317          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A534WLR0_9DELT (Fe/B12 periplasmic-binding domain-containing protein n=4 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A534WLR0_9DELT)

HSP 1 Score: 158 bits (399), Expect = 1.950e-45
Identity = 80/117 (68.38%), Postives = 90/117 (76.92%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASF 354
            WMPEL+A AGGEALVT PG HAPTLDR ALAAL P+VVL+KPCGF L R+  E  ++   L     P     RVYLADGNAFFNRPGPR++ESLEILAACVHPE+F DFA +H ASF
Sbjct:  186 WMPELIALAGGEALVTRPGQHAPTLDRDALAALDPEVVLVKPCGFPLQRTVEELDVLREAL-----PPAWRARVYLADGNAFFNRPGPRIVESLEILAACVHPELFEDFAAKHVASF 297          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A2V6XSJ3_9BACT (Fe/B12 periplasmic-binding domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6XSJ3_9BACT)

HSP 1 Score: 159 bits (401), Expect = 4.240e-45
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            WMPEL+  AGG  LVT PGDHAPT+ R AL AL PDVVL+KPCGF L R   E AL+   L    W A+E GRVY+ADGNA+FNRPGPR++ESLEILAAC+HPE F DF ++H  S  R+
Sbjct:  235 WMPELIERAGGIPLVTRPGDHAPTVTRDALLALTPDVVLIKPCGFPLGRIIEELALLRTSLPWESWRAVEEGRVYVADGNAYFNRPGPRIVESLEILAACLHPEAFDDFRDKHRDSVSRV 354          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A2V6VDM6_9BACT (Fe/B12 periplasmic-binding domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6VDM6_9BACT)

HSP 1 Score: 157 bits (396), Expect = 1.530e-44
Identity = 75/120 (62.50%), Postives = 89/120 (74.17%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            WMPEL+  AGG  LVT PGDHAPT+ R AL AL PDVVL+KPCGF L R   E +L+   L    W A++ GRVY+ADGNA+FNRPGPR++ESLEILAAC+HPE F DF  +H AS  R+
Sbjct:  216 WMPELIERAGGFPLVTRPGDHAPTVTRDALLALTPDVVLIKPCGFPLDRIIEELSLLRTSLPWESWRAVQEGRVYVADGNAYFNRPGPRIVESLEILAACLHPEAFEDFRSKHRASVRRV 335          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A2L0F6X8_SORCE (ABC transporter substrate-binding protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A2L0F6X8_SORCE)

HSP 1 Score: 154 bits (389), Expect = 8.940e-44
Identity = 79/120 (65.83%), Postives = 88/120 (73.33%), Query Frame = 1
Query:    4 WMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            WMPEL+A AGGE LVT PGDHAPTL    LAAL PDVVL+KPCGF L R+ AE  L+ R L    + A+  GRV+LADGNAFFNRPGPR++ESLEILAACVHP  F D    HA S  RL
Sbjct:  186 WMPELIALAGGEPLVTRPGDHAPTLSLADLAALDPDVVLIKPCGFALERTLAEVDLLPRVLPWSSYRAVAQGRVFLADGNAFFNRPGPRIVESLEILAACVHPGPFADARRAHARSVVRL 305          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A518CUL2_9BACT (Corrinoid ABC transporter substrate-binding protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CUL2_9BACT)

HSP 1 Score: 153 bits (387), Expect = 1.740e-43
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 TWMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            TWMPELV  AGG ALVT PG HAPTL  + L AL PDVVL+KPCGFDLAR+  E AL+ + L    W A   GRV++ADGNA+FNRPGPRL+ES EILAAC+HP    D   +HAA+  R+
Sbjct:  185 TWMPELVEIAGGTALVTVPGQHAPTLALEDLRALDPDVVLVKPCGFDLARTAEEAALLQKVLPWSEWRAAREGRVFVADGNAYFNRPGPRLVESAEILAACMHPSACEDLVTKHAAAMRRV 305          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A0A518BFP4_9BACT (Corrinoid ABC transporter substrate-binding protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BFP4_9BACT)

HSP 1 Score: 153 bits (387), Expect = 1.780e-43
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 TWMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            TW PELV  AGG ALV   G ++P L R  LA L PDVV+LKPCGFDL R+ AE  L+A  L    W A+  GRVYLADGNA+FNRPGPRL+ES EILAACVHP  F D AERHA +  R+
Sbjct:  185 TWCPELVRAAGGRALVAVAGQYSPVLGRAELANLDPDVVVLKPCGFDLERTEAELPLLAEALPWEAWRAVRRGRVYLADGNAYFNRPGPRLVESAEILAACVHPTEFADLAERHAGAVRRV 305          
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Match: A9EZ80_SORC5 (Putative periplasmic substrate-binding protein n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9EZ80_SORC5)

HSP 1 Score: 153 bits (386), Expect = 2.520e-43
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 TWMPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSHAEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACVHPEVFGDFAERHAASFERL 363
            TWMPEL+  AGGE LVT PG+HAPTL   ALAAL PDVV++KPCGF L R+  E  L+ R L    + A+  GRVY+ADGNAFFNRPGPR++ESLEILAAC HP +F D    HA S  R+
Sbjct:  185 TWMPELITLAGGEPLVTRPGEHAPTLSPAALAALDPDVVMIKPCGFTLERTLDELDLLPRVLPWATYRAVAQGRVYIADGNAFFNRPGPRIVESLEILAACAHPALFADARRAHARSVARI 305          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81548.19082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A356KHP6_9BACT4.320e-5267.48Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A2D5XNB1_9BACT1.010e-4967.50Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A800MFH4_9BACT7.470e-4967.50Cobalamin-binding protein n=1 Tax=Planctomycetes b... [more]
A0A534WLR0_9DELT1.950e-4568.38Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A2V6XSJ3_9BACT4.240e-4563.33Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A2V6VDM6_9BACT1.530e-4462.50Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A2L0F6X8_SORCE8.940e-4465.83ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A518CUL2_9BACT1.740e-4361.98Corrinoid ABC transporter substrate-binding protei... [more]
A0A518BFP4_9BACT1.780e-4362.81Corrinoid ABC transporter substrate-binding protei... [more]
A9EZ80_SORC52.520e-4361.98Putative periplasmic substrate-binding protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81548contigM-pyrifera_M_contig81548:3..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.5
Seed ortholog evalue4e-33
Seed eggNOG ortholog448385.sce7441
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Periplasmic binding protein
EggNOG OGs1RBT1@1224,2X2KX@28221,2Z04P@29,437EN@68525,COG0614@1,COG0614@2
COG Functional cat.P
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size372
Cds size366
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.2354162-UTR-M-pyrifera_M_contig81548:2..81622816722.2354162-UTR-M-pyrifera_M_contig81548:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81548 3..8 +
1692278140.4177053-UTR-M-pyrifera_M_contig81548:2..81692278140.4177053-UTR-M-pyrifera_M_contig81548:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81548 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816722.250378-CDS-M-pyrifera_M_contig81548:8..3741622816722.250378-CDS-M-pyrifera_M_contig81548:8..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81548 9..374 +
1692278140.430781-CDS-M-pyrifera_M_contig81548:8..3741692278140.430781-CDS-M-pyrifera_M_contig81548:8..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81548 9..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81548.19082.1prot_M-pyrifera_M_contig81548.19082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81548 9..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81548.19082.1

>prot_M-pyrifera_M_contig81548.19082.1 ID=prot_M-pyrifera_M_contig81548.19082.1|Name=mRNA_M-pyrifera_M_contig81548.19082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MPELVADAGGEALVTSPGDHAPTLDRKALAALRPDVVLLKPCGFDLARSH
AEDALIARQLDGLPWPALEHGRVYLADGNAFFNRPGPRLLESLEILAACV
HPEVFGDFAERHAASFERLAL*
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mRNA from alignment at M-pyrifera_M_contig81548:3..374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81548.19082.1 ID=mRNA_M-pyrifera_M_contig81548.19082.1|Name=mRNA_M-pyrifera_M_contig81548.19082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig81548:3..374+ (Macrocystis pyrifera P11B4 male)
ACCTGGATGCCCGAGCTGGTCGCCGACGCCGGCGGCGAGGCGCTGGTCAC GTCCCCCGGCGACCACGCCCCGACCCTCGACCGCAAAGCGCTCGCCGCCC TGCGCCCCGACGTCGTGCTGCTCAAACCATGCGGCTTCGACCTCGCGCGC TCGCACGCCGAGGACGCGCTGATCGCGCGCCAGCTCGACGGCCTGCCGTG GCCCGCGCTCGAGCACGGCCGCGTGTACCTCGCCGACGGCAACGCCTTCT TCAATCGCCCGGGCCCGCGGCTGCTCGAGTCGCTCGAGATCCTCGCCGCG TGCGTGCACCCCGAGGTCTTCGGCGACTTCGCCGAGCGCCACGCCGCGAG CTTCGAGCGCCTCGCGCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81548:3..374+

>mRNA_M-pyrifera_M_contig81548.19082.1 ID=mRNA_M-pyrifera_M_contig81548.19082.1|Name=mRNA_M-pyrifera_M_contig81548.19082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig81548:3..374+ (Macrocystis pyrifera P11B4 male)
ATGCCCGAGCTGGTCGCCGACGCCGGCGGCGAGGCGCTGGTCACGTCCCC
CGGCGACCACGCCCCGACCCTCGACCGCAAAGCGCTCGCCGCCCTGCGCC
CCGACGTCGTGCTGCTCAAACCATGCGGCTTCGACCTCGCGCGCTCGCAC
GCCGAGGACGCGCTGATCGCGCGCCAGCTCGACGGCCTGCCGTGGCCCGC
GCTCGAGCACGGCCGCGTGTACCTCGCCGACGGCAACGCCTTCTTCAATC
GCCCGGGCCCGCGGCTGCTCGAGTCGCTCGAGATCCTCGCCGCGTGCGTG
CACCCCGAGGTCTTCGGCGACTTCGCCGAGCGCCACGCCGCGAGCTTCGA
GCGCCTCGCGCTCTAGATGCCCGAGCTGGTCGCCGACGCCGGCGGCGAGG
CGCTGGTCACGTCCCCCGGCGACCACGCCCCGACCCTCGACCGCAAAGCG
CTCGCCGCCCTGCGCCCCGACGTCGTGCTGCTCAAACCATGCGGCTTCGA
CCTCGCGCGCTCGCACGCCGAGGACGCGCTGATCGCGCGCCAGCTCGACG
GCCTGCCGTGGCCCGCGCTCGAGCACGGCCGCGTGTACCTCGCCGACGGC
AACGCCTTCTTCAATCGCCCGGGCCCGCGGCTGCTCGAGTCGCTCGAGAT
CCTCGCCGCGTGCGTGCACCCCGAGGTCTTCGGCGACTTCGCCGAGCGCC
ACGCCGCGAGCTTCGAGCGCCTCGCGCTCTAG
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