mRNA_M-pyrifera_M_contig81263.19006.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81263.19006.1
Unique NamemRNA_M-pyrifera_M_contig81263.19006.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A2A2LFY4_9BILA (Uncharacterized protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LFY4_9BILA)

HSP 1 Score: 137 bits (346), Expect = 7.230e-36
Identity = 63/87 (72.41%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGAIG+++R+P+F   D V PAH+++VSWAADHRVVDGATMARFSNRWK +LE P+TM++ ++
Sbjct: 1266 FTLSNIGAIGGTYASPVIFPPQVAIGAIGKIERLPKFDHHDNVYPAHVVKVSWAADHRVVDGATMARFSNRWKSYLEKPATMLAQLK 1352
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BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A2A2KC75_9BILA (Cyanocobalamin reductase (cyanide-eliminating) n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KC75_9BILA)

HSP 1 Score: 136 bits (342), Expect = 2.500e-35
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGAIG+++++P+F   D V PAH++++SWAADHRVVDGATMARFSNRWK +LE P+TM++ ++
Sbjct: 1256 FTLSNIGAIGGTYASPVIFPPQVAIGAIGKIEKLPKFDHHDNVYPAHVVKISWAADHRVVDGATMARFSNRWKSYLEKPATMLAQLK 1342
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BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A4U8URS2_STECR (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8URS2_STECR)

HSP 1 Score: 133 bits (334), Expect = 3.850e-35
Identity = 62/87 (71.26%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGA+G+++++PRF     V PAH+++VSWAADHRVVDGATMARFSN WK++LE P  M+S MR
Sbjct:  367 FTLSNIGAIGGTYASPVIFPPQVAIGALGKIEKLPRFDKDGNVYPAHLVKVSWAADHRVVDGATMARFSNLWKKYLENPMVMMSEMR 453
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BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A158PFR2_ANGCS (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Angiostrongylus costaricensis TaxID=334426 RepID=A0A158PFR2_ANGCS)

HSP 1 Score: 133 bits (334), Expect = 7.840e-35
Identity = 60/87 (68.97%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F +SNIG+IGGTYASPVIF PQVAIGA+GR+Q++PR+   D +VP HI +VSWAADHRVVDGAT+ARFSNRWK +LE PS M++ ++
Sbjct:  426 FTISNIGSIGGTYASPVIFPPQVAIGALGRIQKLPRYDSNDNLVPMHIFKVSWAADHRVVDGATIARFSNRWKYYLEHPSAMLTLLK 512
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BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A2H2IM66_CAEJA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2IM66_CAEJA)

HSP 1 Score: 131 bits (329), Expect = 1.910e-34
Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGAIG+++R+PRF   D V+ A++++VSW ADHRVVDGATMARFSNRWK +LE PS M++ ++
Sbjct:  362 FTLSNIGAIGGTYASPVIFPPQVAIGAIGKIERLPRFDKHDNVIAANVIKVSWCADHRVVDGATMARFSNRWKFYLEHPSAMLAQLK 448
[Close]
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A6I9NU16_9TELE (lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9NU16_9TELE)

HSP 1 Score: 126 bits (316), Expect = 1.910e-34
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMI 249
            F LSNIG+IGGTYA PVI  P+VAIGA+G++Q +PRF  G  VVPAHIM VSW+ADHR++DGATM+RFSN WK++LE P+ M+
Sbjct:  138 FTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDAGGQVVPAHIMNVSWSADHRIIDGATMSRFSNLWKEYLENPAAMV 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: UPI00146D1070 (lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146D1070)

HSP 1 Score: 128 bits (321), Expect = 2.380e-34
Identity = 57/83 (68.67%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMI 249
            F LSNIG+IGGTYA PVI  P+VAIGA+G++Q +PRF  G  VVPAHIM VSW+ADHR++DGATM+RFSN WK++LE P+TM+
Sbjct:  220 FTLSNIGSIGGTYAKPVILPPEVAIGALGKIQVLPRFDAGGQVVPAHIMNVSWSADHRIIDGATMSRFSNLWKEYLENPATMV 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: E3LG82_CAERE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=5 Tax=Caenorhabditis TaxID=6237 RepID=E3LG82_CAERE)

HSP 1 Score: 130 bits (328), Expect = 2.630e-34
Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGAIG+++R+PRF   D V+ A++++VSW ADHRVVDGATMARFSNRWK +LE PS M++ ++
Sbjct:  361 FTLSNIGAIGGTYASPVIFPPQVAIGAIGKIERLPRFDRHDNVIAANVIKVSWCADHRVVDGATMARFSNRWKFYLEHPSAMLAQLK 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: ODB2_CAEEL (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=ODB2_CAEEL)

HSP 1 Score: 130 bits (328), Expect = 2.660e-34
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIG IGGTYASPV+F PQVAIGAIG+++++PRF   D V+P +IM+VSW ADHRVVDGATMARFSNRWK +LE PS M++ ++
Sbjct:  362 FSLSNIGNIGGTYASPVVFPPQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWKFYLEHPSAMLAQLK 448
[Close]
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Match: A0A1I7TTQ4_9PELO (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7TTQ4_9PELO)

HSP 1 Score: 130 bits (328), Expect = 2.740e-34
Identity = 61/87 (70.11%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQVSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR 261
            F LSNIGAIGGTYASPVIF PQVAIGAIG+++R+PRF   D V+ A++++VSW ADHRVVDGATMARFSNRWK +LE PS M++ ++
Sbjct:  364 FTLSNIGAIGGTYASPVIFPPQVAIGAIGKIERLPRFDRHDNVIAANVIKVSWCADHRVVDGATMARFSNRWKFYLEHPSAMLAQLK 450
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81263.19006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A2LFY4_9BILA7.230e-3672.41Uncharacterized protein n=1 Tax=Diploscapter pachy... [more]
A0A2A2KC75_9BILA2.500e-3570.11Cyanocobalamin reductase (cyanide-eliminating) n=1... [more]
A0A4U8URS2_STECR3.850e-3571.26Dihydrolipoamide acetyltransferase component of py... [more]
A0A158PFR2_ANGCS7.840e-3568.97Dihydrolipoamide acetyltransferase component of py... [more]
A0A2H2IM66_CAEJA1.910e-3470.11Dihydrolipoamide acetyltransferase component of py... [more]
A0A6I9NU16_9TELE1.910e-3467.47lipoamide acyltransferase component of branched-ch... [more]
UPI00146D10702.380e-3468.67lipoamide acyltransferase component of branched-ch... [more]
E3LG82_CAERE2.630e-3470.11Dihydrolipoamide acetyltransferase component of py... [more]
ODB2_CAEEL2.660e-3468.97Lipoamide acyltransferase component of branched-ch... [more]
A0A1I7TTQ4_9PELO2.740e-3470.11Dihydrolipoamide acetyltransferase component of py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81263contigM-pyrifera_M_contig81263:75..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score132.5
Seed ortholog evalue9.7e-29
Seed eggNOG ortholog281687.CJA18106
Preferred nameZK669.4
KEGG rclassRC00004,RC02727,RC02870
KEGG koko:K09699
KEGG ReactionR02662,R03174,R04097,R10998
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010565,GO:0019216,GO:0019217,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040019,GO:0042304,GO:0042995,GO:0043005,GO:0043226,GO:0044424,GO:0044444,GO:0044464,GO:0045723,GO:0045834,GO:0045923,GO:0045995,GO:0046662,GO:0046889,GO:0046890,GO:0048518,GO:0048520,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051094,GO:0051239,GO:0051240,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0080090,GO:0097458,GO:0120025,GO:1901046,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.2-oxoacid dehydrogenases acyltransferase (catalytic domain)
EggNOG OGs1KUE4@119089,38CZZ@33154,3BANT@33208,3CT3S@33213,40AI7@6231,40YYR@6236,COG0508@1,KOG0558@2759
EC2.3.1.168
COG Functional cat.C
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.6856444-CDS-M-pyrifera_M_contig81263:74..3381622816718.6856444-CDS-M-pyrifera_M_contig81263:74..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81263 75..338 +
1692278138.4473126-CDS-M-pyrifera_M_contig81263:74..3381692278138.4473126-CDS-M-pyrifera_M_contig81263:74..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81263 75..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81263.19006.1prot_M-pyrifera_M_contig81263.19006.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81263 75..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81263.19006.1

>prot_M-pyrifera_M_contig81263.19006.1 ID=prot_M-pyrifera_M_contig81263.19006.1|Name=mRNA_M-pyrifera_M_contig81263.19006.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
FRLSNIGAIGGTYASPVIFAPQVAIGAIGRMQRVPRFGPGDTVVPAHIMQ
VSWAADHRVVDGATMARFSNRWKQFLETPSTMISAMR*
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mRNA from alignment at M-pyrifera_M_contig81263:75..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81263.19006.1 ID=mRNA_M-pyrifera_M_contig81263.19006.1|Name=mRNA_M-pyrifera_M_contig81263.19006.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig81263:75..338+ (Macrocystis pyrifera P11B4 male)
TTCAGATTGTCCAACATTGGTGCCATTGGAGGAACGTATGCATCTCCAGT
AATCTTTGCACCACAGGTGGCGATTGGTGCAATTGGAAGGATGCAACGTG
TGCCACGTTTTGGACCAGGAGACACTGTGGTTCCTGCACACATCATGCAA
GTCAGTTGGGCTGCAGACCATCGCGTTGTGGATGGAGCGACAATGGCTCG
CTTCTCCAACCGCTGGAAACAATTCCTCGAAACACCTTCGACCATGATCT
CCGCAATGCGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81263:75..338+

>mRNA_M-pyrifera_M_contig81263.19006.1 ID=mRNA_M-pyrifera_M_contig81263.19006.1|Name=mRNA_M-pyrifera_M_contig81263.19006.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig81263:75..338+ (Macrocystis pyrifera P11B4 male)
TTCAGATTGTCCAACATTGGTGCCATTGGAGGAACGTATGCATCTCCAGT
AATCTTTGCACCACAGGTGGCGATTGGTGCAATTGGAAGGATGCAACGTG
TGCCACGTTTTGGACCAGGAGACACTGTGGTTCCTGCACACATCATGCAA
GTCAGTTGGGCTGCAGACCATCGCGTTGTGGATGGAGCGACAATGGCTCG
CTTCTCCAACCGCTGGAAACAATTCCTCGAAACACCTTCGACCATGATCT
CCGCAATGCGATGATTCAGATTGTCCAACATTGGTGCCATTGGAGGAACG
TATGCATCTCCAGTAATCTTTGCACCACAGGTGGCGATTGGTGCAATTGG
AAGGATGCAACGTGTGCCACGTTTTGGACCAGGAGACACTGTGGTTCCTG
CACACATCATGCAAGTCAGTTGGGCTGCAGACCATCGCGTTGTGGATGGA
GCGACAATGGCTCGCTTCTCCAACCGCTGGAAACAATTCCTCGAAACACC
TTCGACCATGATCTCCGCAATGCGATGA
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