mRNA_M-pyrifera_M_contig81243.18998.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81243.18998.1
Unique NamemRNA_M-pyrifera_M_contig81243.18998.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A7Y2GTD0_9ACTN (Fumarate reductase iron-sulfur subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GTD0_9ACTN)

HSP 1 Score: 424 bits (1090), Expect = 7.060e-149
Identity = 197/246 (80.08%), Postives = 222/246 (90.24%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQ 738
            VWRQ GP+A GGFA Y+A  +P DASFLEMLD+VNE+LIE   +PIEFPHDCREGICGTCG+M+NG+AHGQE+ATA CQLHMRKF+DGD I +EPWRAAAFPV+RDLVVDRSALD++I++GGYIS  TG A DANE+L+PKEVADS+MDAAACIGCGACVAACPNSA QLFT+AK+WHLNSLPQGQPERYRRTEAMVETME FFGSCTNHGEC EACPK IS DFIA+MN+DY+KSK  NRRLA Q
Sbjct:    7 VWRQAGPDAIGGFAEYDAPNVPTDASFLEMLDMVNEKLIENDQIPIEFPHDCREGICGTCGMMVNGQAHGQEKATAVCQLHMRKFNDGDMIEIEPWRAAAFPVVRDLVVDRSALDRIIEAGGYISVSTGNARDANEILVPKEVADSAMDAAACIGCGACVAACPNSAAQLFTAAKLWHLNSLPQGQPERYRRTEAMVETMEDFFGSCTNHGECTEACPKAISQDFIAFMNKDYVKSKVFNRRLAGQ 252          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A7Y2N9D6_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9D6_9ACTN)

HSP 1 Score: 417 bits (1071), Expect = 5.740e-146
Identity = 192/246 (78.05%), Postives = 220/246 (89.43%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQ 738
            +WRQ GP+  GGFA Y+A G+P DASFLEMLD+VNERLIE  ++PIEFPHDCREGICGTCG+M+NG+AHG E+ TA CQLHMRK++DGD I +EPWRA  FPV+RDLVVDRSALD++I++GGYISA TG A DANE+LIP+EVA+SSMDAAACIGCGACVAACPNSA QLFTSAK+WHLNSLPQGQPERY+RTE MVETME+FFGSCTNHGEC EACPK IS DFIA+MNRDY+KSK  NR+LA Q
Sbjct:    7 IWRQTGPDDLGGFAEYDAPGVPIDASFLEMLDMVNERLIENNEIPIEFPHDCREGICGTCGMMVNGQAHGHEKNTAICQLHMRKYNDGDLIEIEPWRATGFPVIRDLVVDRSALDRIIEAGGYISAATGNARDANEILIPQEVAESSMDAAACIGCGACVAACPNSAAQLFTSAKLWHLNSLPQGQPERYKRTEEMVETMEEFFGSCTNHGECTEACPKSISQDFIAFMNRDYIKSKIYNRKLAGQ 252          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A6B1AZE7_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AZE7_9ACTN)

HSP 1 Score: 411 bits (1056), Expect = 1.030e-143
Identity = 194/246 (78.86%), Postives = 220/246 (89.43%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQ 738
            +WRQDGP+A+G F + +A+ IP DASFLEMLD++NERLIE    PI FPHDCREGICGTCGVMING+AHG E+ATATCQLHMRKF DGD IV+EPWRAAAFPVL+DL+VDR A D++I++GGYISAPTGT  DANE+ +PKEVAD++MDAAACIGCGACVAACPNSA QLFTSAK+ HLN LPQGQPER++RTEAMVETME FFGSCTNHGEC EACPKEISLDFIA+MNRDY+KSK  NR LASQ
Sbjct:    7 IWRQDGPHAEGSFLDIDADQIPVDASFLEMLDLINERLIEDDVEPITFPHDCREGICGTCGVMINGQAHGPEKATATCQLHMRKFRDGDQIVIEPWRAAAFPVLKDLMVDRRAFDRIIEAGGYISAPTGTPQDANEIPVPKEVADTAMDAAACIGCGACVAACPNSAAQLFTSAKLAHLNVLPQGQPERWKRTEAMVETMEDFFGSCTNHGECHEACPKEISLDFIAFMNRDYIKSKSKNRSLASQ 252          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A2D6U992_9ACTN (Succinate dehydrogenase n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U992_9ACTN)

HSP 1 Score: 407 bits (1046), Expect = 4.110e-142
Identity = 190/246 (77.24%), Postives = 220/246 (89.43%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQ 738
            +WRQ GP+AQG F   +A+ IP+DASFLEMLD+VNERLI     P+ F HDCREGICGTCGVMING+AHG E+ATATCQLHMRKF+DGD IV+EPW+A +FP+L+DL+VDR A D+++++GGYISAPTGTA DANE+ IPKEVAD+SMDAAACIGCGACVAACPNSAGQLFTSAK+ HLN+LPQGQPER++RTEAMVETME FFGSCTNHGECAEACPKEISLDFIA+MNRDY+KSK  NR L S+
Sbjct:   11 IWRQAGPHAQGSFLEVDAHDIPEDASFLEMLDVVNERLIADDVEPVTFGHDCREGICGTCGVMINGQAHGPEKATATCQLHMRKFNDGDEIVIEPWQATSFPILKDLMVDRRAFDRIVEAGGYISAPTGTAPDANEIPIPKEVADTSMDAAACIGCGACVAACPNSAGQLFTSAKLHHLNTLPQGQPERWKRTEAMVETMEDFFGSCTNHGECAEACPKEISLDFIAFMNRDYVKSKVKNRSLVSK 256          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A6B1EDU9_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EDU9_9ACTN)

HSP 1 Score: 395 bits (1014), Expect = 2.660e-137
Identity = 187/247 (75.71%), Postives = 216/247 (87.45%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            +WRQ GP+  G F + +A+ IP+D SFLEMLDIVNERLI+    PI F HDCREGICGTCGVMINGR HG E+ATATCQLHMRKFSDGD IV+EP+RAA+FPV++DL+VDR A D++I+SGG+ISAPTGTA DANE+ +PK+VAD +MDAAACIGCGACVAACPNSA QLFT+AK+ HLN LPQGQPER+RR EAMVETME FFGSCTNHGEC EACPKEISLDFIA +NRDY+K+K  NRRLASQ+
Sbjct:    7 IWRQAGPDEPGAFLDVDAHDIPEDCSFLEMLDIVNERLIDDDIEPITFAHDCREGICGTCGVMINGRPHGPEKATATCQLHMRKFSDGDEIVIEPFRAASFPVVKDLMVDRRAFDRIIESGGFISAPTGTAPDANEIPVPKDVADFAMDAAACIGCGACVAACPNSAAQLFTAAKLGHLNVLPQGQPERWRRAEAMVETMESFFGSCTNHGECTEACPKEISLDFIAVLNRDYLKAKVKNRRLASQT 253          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A351EIT8_9ACTN (Fumarate reductase iron-sulfur subunit n=4 Tax=root TaxID=1 RepID=A0A351EIT8_9ACTN)

HSP 1 Score: 395 bits (1014), Expect = 3.070e-137
Identity = 184/247 (74.49%), Postives = 215/247 (87.04%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            +WRQ+GPN +G F  Y A+GI +D SFLEMLDIVNE L+EKGDVPIEF HDCREGICGTC +MING+AHG+E+AT TCQLHMRKF DG+TIVVEP+RA AFPV+RDLV+DRSA D+++++GGYIS  TG A+DAN   +PKE AD+S DAAACIGCGACVAACPNSA QLFTSAK+ HLN +PQGQP+R+ RTE MVETME FFGSCTNHGEC EACPKEISLDFIA+MNRDY+K+K  NR+LA Q+
Sbjct:   11 IWRQNGPNEEGQFETYSADGISEDMSFLEMLDIVNEDLVEKGDVPIEFDHDCREGICGTCSLMINGQAHGKEKATTTCQLHMRKFDDGETIVVEPFRARAFPVVRDLVIDRSAFDRIVEAGGYISINTGAASDANLTPVPKEAADTSFDAAACIGCGACVAACPNSAAQLFTSAKLAHLNLIPQGQPQRFERTENMVETMESFFGSCTNHGECHEACPKEISLDFIAFMNRDYVKAKIKNRKLAGQT 257          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A6B1GDC9_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1GDC9_9ACTN)

HSP 1 Score: 392 bits (1006), Expect = 4.400e-136
Identity = 184/247 (74.49%), Postives = 211/247 (85.43%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            +WRQDGP+A G F  ++A  I +D SFLE+LDI+NERLIE GDVPIEF HDCREGICG C +MINGRAHG E AT TCQLHMRKF+DGD I VEP+RA AFPV+RDLVVDRS+ D++I++GGYIS  TG   DAN+  +PKE AD+SMDAAACIGCGACVAACPNSA QLFTSAK+ HLN +PQGQP+R+ RTEAMVETMEQFFGSCTNHGEC EACPKEISLDFIA+MNRDY+K+K  NR+L  QS
Sbjct:    7 IWRQDGPDAPGRFHTFDAPNISEDMSFLELLDIINERLIEGGDVPIEFDHDCREGICGMCSLMINGRAHGHELATTTCQLHMRKFTDGDVITVEPFRAKAFPVVRDLVVDRSSFDRIIEAGGYISVNTGAVGDANQTPVPKEAADTSMDAAACIGCGACVAACPNSAAQLFTSAKLAHLNLIPQGQPQRWERTEAMVETMEQFFGSCTNHGECTEACPKEISLDFIAFMNRDYVKAKIKNRKLTGQS 253          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A7Y2DE88_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DE88_9ACTN)

HSP 1 Score: 389 bits (998), Expect = 7.280e-135
Identity = 182/247 (73.68%), Postives = 208/247 (84.21%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            VWRQDGPN  G F +YEANGI DDASFLEMLD+VNERLIE G  PI F  DCREGICGTCG+MING+AHG ++ TATCQLHMRKFSDGD I +EPWRA +FP+L+DL VDRSALD +I++GGYI+  TG A DAN + +PKE AD + DAAACIGCGACVAACPNSA QLFTSAK+ H+N LPQGQPER+ R E MVETME FFGSCTNHGEC EACPKEISLDFIA++NRDY+K+K  NR+L  Q+
Sbjct:    7 VWRQDGPNGAGRFESYEANGIADDASFLEMLDVVNERLIEDGQEPITFESDCREGICGTCGIMINGKAHGPQKGTATCQLHMRKFSDGDNITIEPWRAESFPILKDLAVDRSALDHIIEAGGYITVNTGGAPDANLIPVPKEAADMAFDAAACIGCGACVAACPNSAAQLFTSAKLQHMNLLPQGQPERWDRAENMVETMEMFFGSCTNHGECHEACPKEISLDFIAFLNRDYVKAKIKNRKLLGQN 253          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A350RG75_9ACTN (Succinate dehydrogenase/fumarate reductase iron-sulfur subunit n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A350RG75_9ACTN)

HSP 1 Score: 389 bits (1000), Expect = 1.120e-134
Identity = 186/247 (75.30%), Postives = 211/247 (85.43%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            VWRQDG N  G F  Y ANGI +D SFLEMLDI+NE LIE   VPIEF HDCREGICGTC +MING+AHGQE+AT TCQLHMRKF+DGDTIVVEP+RA AFPV+RDLVVDRS+ D++I++GGYIS  TG A+DAN   +PKE AD+S DAAACIGCGACVAACPNSA QLFTSAK+ HLN +PQGQP+R+ RTE MVETME FFGSCTNHGEC EACPKEISLDFIA+MNRDY+K+K  NR+LA Q+
Sbjct:   39 VWRQDGSNDPGHFETYAANGISEDMSFLEMLDIINEDLIENDLVPIEFDHDCREGICGTCSLMINGQAHGQEKATTTCQLHMRKFNDGDTIVVEPFRARAFPVVRDLVVDRSSFDRIIEAGGYISVNTGAASDANLTPVPKEAADTSFDAAACIGCGACVAACPNSAAQLFTSAKLAHLNLIPQGQPQRFERTETMVETMETFFGSCTNHGECHEACPKEISLDFIAFMNRDYVKAKVKNRKLAGQT 285          
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Match: A0A2E1CQ27_9ACTN (Succinate dehydrogenase n=13 Tax=Actinobacteria TaxID=201174 RepID=A0A2E1CQ27_9ACTN)

HSP 1 Score: 386 bits (991), Expect = 8.780e-134
Identity = 180/247 (72.87%), Postives = 209/247 (84.62%), Query Frame = 1
Query:    1 VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPHDCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAAFPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDAAACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETMEQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS 741
            VWRQ+GP+  G F  YE N I  D SFLEM D++NE LI  G+ P+E   DCREGICGTCG MING+AHG E+ATATCQLHMRKFSDGDTI+VEPW+AA+FPV++DLVVDRS LD++I++GGYI+ PTG+A DAN + +PK+ AD++ DAAACIGCGACVAACPNSA QLFTSAKV HLN LPQGQPER+ RTE MVETME++FGSCTNHGEC EACPKEI LDFIAY NRDY+KSKR NR+L  QS
Sbjct:    7 VWRQNGPDETGRFETYEVNEISPDMSFLEMFDVLNENLISDGEEPVEIASDCREGICGTCGCMINGKAHGPEKATATCQLHMRKFSDGDTIIVEPWQAASFPVIKDLVVDRSPLDRIIEAGGYITVPTGSAPDANLIPVPKDAADTAFDAAACIGCGACVAACPNSAAQLFTSAKVQHLNLLPQGQPERWSRTEDMVETMEEYFGSCTNHGECHEACPKEIPLDFIAYTNRDYIKSKRKNRKLLGQS 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81243.18998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2GTD0_9ACTN7.060e-14980.08Fumarate reductase iron-sulfur subunit n=1 Tax=Aci... [more]
A0A7Y2N9D6_9ACTN5.740e-14678.05Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A6B1AZE7_9ACTN1.030e-14378.86Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A2D6U992_9ACTN4.110e-14277.24Succinate dehydrogenase n=5 Tax=Acidimicrobiaceae ... [more]
A0A6B1EDU9_9ACTN2.660e-13775.71Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A351EIT8_9ACTN3.070e-13774.49Fumarate reductase iron-sulfur subunit n=4 Tax=roo... [more]
A0A6B1GDC9_9ACTN4.400e-13674.49Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A7Y2DE88_9ACTN7.280e-13573.68Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A350RG75_9ACTN1.120e-13475.30Succinate dehydrogenase/fumarate reductase iron-su... [more]
A0A2E1CQ27_9ACTN8.780e-13472.87Succinate dehydrogenase n=13 Tax=Actinobacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81243contigM-pyrifera_M_contig81243:189..932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score350.1
Seed ortholog evalue8.3e-94
Seed eggNOG ortholog1313172.YM304_07490
Preferred namefrdB
KEGG rclassRC00045
KEGG koko:K00240,ko:K00245
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko00620,ko00650,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,map00020,map00190,map00620,map00650,map00720,map01100,map01110,map01120,map01130,map01200,map02020
KEGG ModuleM00009,M00011,M00149,M00150,M00173,M00374,M00376
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2GP9C@201174,4CNED@84992,COG0479@1,COG0479@2
EC1.3.5.1,1.3.5.4
COG Functional cat.C
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size744
Cds size744
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816718.320441-CDS-M-pyrifera_M_contig81243:188..9321622816718.320441-CDS-M-pyrifera_M_contig81243:188..932Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81243 189..932 -
1692278138.2443197-CDS-M-pyrifera_M_contig81243:188..9321692278138.2443197-CDS-M-pyrifera_M_contig81243:188..932Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81243 189..932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81243.18998.1prot_M-pyrifera_M_contig81243.18998.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81243 189..932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81243.18998.1

>prot_M-pyrifera_M_contig81243.18998.1 ID=prot_M-pyrifera_M_contig81243.18998.1|Name=mRNA_M-pyrifera_M_contig81243.18998.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
VWRQDGPNAQGGFANYEANGIPDDASFLEMLDIVNERLIEKGDVPIEFPH
DCREGICGTCGVMINGRAHGQERATATCQLHMRKFSDGDTIVVEPWRAAA
FPVLRDLVVDRSALDKVIQSGGYISAPTGTAADANEMLIPKEVADSSMDA
AACIGCGACVAACPNSAGQLFTSAKVWHLNSLPQGQPERYRRTEAMVETM
EQFFGSCTNHGECAEACPKEISLDFIAYMNRDYMKSKRVNRRLASQS*
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mRNA from alignment at M-pyrifera_M_contig81243:189..932-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81243.18998.1 ID=mRNA_M-pyrifera_M_contig81243.18998.1|Name=mRNA_M-pyrifera_M_contig81243.18998.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig81243:189..932- (Macrocystis pyrifera P11B4 male)
GTCTGGCGTCAAGACGGCCCCAATGCCCAGGGCGGATTCGCCAACTACGA AGCCAACGGCATCCCCGACGATGCCTCGTTCCTCGAGATGCTCGACATCG TGAACGAGCGCCTCATCGAAAAGGGCGACGTCCCGATCGAGTTCCCGCAC GACTGCCGTGAGGGCATCTGCGGAACCTGTGGCGTGATGATCAACGGCCG TGCGCACGGACAGGAGCGGGCAACCGCAACCTGCCAGCTCCACATGCGCA AGTTCTCCGACGGCGACACCATCGTCGTCGAGCCATGGCGAGCCGCAGCG TTCCCCGTGCTTCGAGACCTCGTCGTCGATCGTTCGGCGCTCGACAAGGT CATCCAGTCGGGCGGCTACATCAGCGCTCCGACCGGCACCGCAGCCGACG CCAACGAGATGTTGATCCCGAAAGAGGTCGCCGATTCGTCGATGGACGCA GCAGCGTGCATCGGATGCGGCGCCTGCGTCGCCGCCTGCCCGAACTCCGC CGGCCAGCTCTTCACCTCGGCCAAGGTCTGGCATCTCAACTCGCTGCCCC AGGGCCAGCCGGAGCGGTATCGCCGCACCGAGGCCATGGTCGAGACCATG GAGCAGTTCTTCGGCTCGTGCACGAACCACGGCGAATGCGCCGAGGCCTG CCCGAAGGAGATCAGCCTCGACTTCATCGCCTACATGAACCGCGACTACA TGAAGTCGAAGCGAGTCAACCGTCGCCTGGCCAGCCAGAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81243:189..932-

>mRNA_M-pyrifera_M_contig81243.18998.1 ID=mRNA_M-pyrifera_M_contig81243.18998.1|Name=mRNA_M-pyrifera_M_contig81243.18998.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig81243:189..932- (Macrocystis pyrifera P11B4 male)
GTCTGGCGTCAAGACGGCCCCAATGCCCAGGGCGGATTCGCCAACTACGA
AGCCAACGGCATCCCCGACGATGCCTCGTTCCTCGAGATGCTCGACATCG
TGAACGAGCGCCTCATCGAAAAGGGCGACGTCCCGATCGAGTTCCCGCAC
GACTGCCGTGAGGGCATCTGCGGAACCTGTGGCGTGATGATCAACGGCCG
TGCGCACGGACAGGAGCGGGCAACCGCAACCTGCCAGCTCCACATGCGCA
AGTTCTCCGACGGCGACACCATCGTCGTCGAGCCATGGCGAGCCGCAGCG
TTCCCCGTGCTTCGAGACCTCGTCGTCGATCGTTCGGCGCTCGACAAGGT
CATCCAGTCGGGCGGCTACATCAGCGCTCCGACCGGCACCGCAGCCGACG
CCAACGAGATGTTGATCCCGAAAGAGGTCGCCGATTCGTCGATGGACGCA
GCAGCGTGCATCGGATGCGGCGCCTGCGTCGCCGCCTGCCCGAACTCCGC
CGGCCAGCTCTTCACCTCGGCCAAGGTCTGGCATCTCAACTCGCTGCCCC
AGGGCCAGCCGGAGCGGTATCGCCGCACCGAGGCCATGGTCGAGACCATG
GAGCAGTTCTTCGGCTCGTGCACGAACCACGGCGAATGCGCCGAGGCCTG
CCCGAAGGAGATCAGCCTCGACTTCATCGCCTACATGAACCGCGACTACA
TGAAGTCGAAGCGAGTCAACCGTCGCCTGGCCAGCCAGAGCTGAGTCTGG
CGTCAAGACGGCCCCAATGCCCAGGGCGGATTCGCCAACTACGAAGCCAA
CGGCATCCCCGACGATGCCTCGTTCCTCGAGATGCTCGACATCGTGAACG
AGCGCCTCATCGAAAAGGGCGACGTCCCGATCGAGTTCCCGCACGACTGC
CGTGAGGGCATCTGCGGAACCTGTGGCGTGATGATCAACGGCCGTGCGCA
CGGACAGGAGCGGGCAACCGCAACCTGCCAGCTCCACATGCGCAAGTTCT
CCGACGGCGACACCATCGTCGTCGAGCCATGGCGAGCCGCAGCGTTCCCC
GTGCTTCGAGACCTCGTCGTCGATCGTTCGGCGCTCGACAAGGTCATCCA
GTCGGGCGGCTACATCAGCGCTCCGACCGGCACCGCAGCCGACGCCAACG
AGATGTTGATCCCGAAAGAGGTCGCCGATTCGTCGATGGACGCAGCAGCG
TGCATCGGATGCGGCGCCTGCGTCGCCGCCTGCCCGAACTCCGCCGGCCA
GCTCTTCACCTCGGCCAAGGTCTGGCATCTCAACTCGCTGCCCCAGGGCC
AGCCGGAGCGGTATCGCCGCACCGAGGCCATGGTCGAGACCATGGAGCAG
TTCTTCGGCTCGTGCACGAACCACGGCGAATGCGCCGAGGCCTGCCCGAA
GGAGATCAGCCTCGACTTCATCGCCTACATGAACCGCGACTACATGAAGT
CGAAGCGAGTCAACCGTCGCCTGGCCAGCCAGAGCTGA
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