mRNA_M-pyrifera_M_contig81177.18984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81177.18984.1
Unique NamemRNA_M-pyrifera_M_contig81177.18984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A812WJY8_SYMMI (Dak protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJY8_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 2.120e-14
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   25 FSETSMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            F+  + E  FIGISGLIGAGKSTLA  L + L+LPV++EPVIDN YLADFY
Sbjct:    8 FNSANCEGLFIGISGLIGAGKSTLATALAKELNLPVYYEPVIDNVYLADFY 58          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A8J4PR11_9MYCE (dNK domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PR11_9MYCE)

HSP 1 Score: 71.2 bits (173), Expect = 1.270e-13
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   34 TSMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            +++E   IGISGLIGAGK+TL  ELG+VL+LP ++EPVIDN+YL+DFY
Sbjct:    7 SNLEGLHIGISGLIGAGKTTLCTELGKVLNLPTYYEPVIDNSYLSDFY 54          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A2E7UWS8_9DELT (Deoxynucleoside kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7UWS8_9DELT)

HSP 1 Score: 70.9 bits (172), Expect = 2.050e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1
Query:   40 MEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            ++  FIGI+G+IGAGKSTLA  LG +LDLPV++EPV DN YLADFY
Sbjct:   21 LQDLFIGIAGMIGAGKSTLATRLGELLDLPVYYEPVKDNDYLADFY 66          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A4P5VQD3_9DELT (Deoxynucleoside kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A4P5VQD3_9DELT)

HSP 1 Score: 70.5 bits (171), Expect = 2.420e-13
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   22 TFSETSMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            T S  S+   FIGI+G+IGAGKSTLA  LG+ L LPV+FEPV DN YLADFY
Sbjct:    3 TPSAASLNDLFIGIAGMIGAGKSTLATALGQHLQLPVYFEPVADNEYLADFY 54          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A8J6BAN6_9EUKA (Deoxynucleoside kinase n=2 Tax=Carpediemonas membranifera TaxID=201153 RepID=A0A8J6BAN6_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 2.830e-13
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   40 MEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            M   FIGISGLIGAGKSTLA +L + LDLP+F EPVIDN YL DFY
Sbjct:   24 MTNVFIGISGLIGAGKSTLAEKLAKRLDLPIFKEPVIDNIYLEDFY 69          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A3B8LLI0_9DELT (Deoxynucleoside kinase n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A3B8LLI0_9DELT)

HSP 1 Score: 69.7 bits (169), Expect = 4.280e-13
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:   37 SMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            SM+K FIGISGLIGAGKSTLA+ LG  L L V++EPV DN YL+DFY
Sbjct:    5 SMDKIFIGISGLIGAGKSTLAKTLGEHLGLDVYYEPVEDNEYLSDFY 51          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: F0ZFA3_DICPU (dNK domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZFA3_DICPU)

HSP 1 Score: 69.7 bits (169), Expect = 5.250e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 MSASSAMTFSETSMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            MS S  +   + S+E   I ISGLIGAGK+TL   LG+VL+LP ++EPVIDN+YLADFY
Sbjct:    1 MSESPTLFSVDKSLEGTHIAISGLIGAGKTTLCTALGKVLNLPTYYEPVIDNSYLADFY 59          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A2F0AQ94_9DELT (Deoxynucleoside kinase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2F0AQ94_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-12
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   52 FIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            FIGI+GLIGAGK+TLA  LG+ LDLPV++EPV DN YLADFY
Sbjct:    2 FIGIAGLIGAGKTTLATALGQHLDLPVYYEPVKDNEYLADFY 43          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A1J5EAG1_9DELT (dNK domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1J5EAG1_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 1.220e-12
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1
Query:   40 MEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            ++K FIGI+G+IGAGKSTLA  LG+ LD+ V++EPV DN YLADFY
Sbjct:    4 IDKLFIGIAGMIGAGKSTLATALGKHLDIDVYYEPVADNEYLADFY 49          
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Match: A0A6U0IGX3_9EUKA (Hypothetical protein n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A6U0IGX3_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 2.150e-12
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   40 MEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVIDNTYLADFY 177
            ME  F+ ISGLIGAGKSTLA  LG  L+LPV++EPV DN YLADFY
Sbjct:   39 METLFVAISGLIGAGKSTLATALGAELNLPVYYEPVEDNEYLADFY 84          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81177.18984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WJY8_SYMMI2.120e-1468.63Dak protein (Fragment) n=1 Tax=Symbiodinium microa... [more]
A0A8J4PR11_9MYCE1.270e-1366.67dNK domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A2E7UWS8_9DELT2.050e-1369.57Deoxynucleoside kinase n=1 Tax=Deltaproteobacteria... [more]
A0A4P5VQD3_9DELT2.420e-1367.31Deoxynucleoside kinase n=1 Tax=Deltaproteobacteria... [more]
A0A8J6BAN6_9EUKA2.830e-1373.91Deoxynucleoside kinase n=2 Tax=Carpediemonas membr... [more]
A0A3B8LLI0_9DELT4.280e-1372.34Deoxynucleoside kinase n=2 Tax=Deltaproteobacteria... [more]
F0ZFA3_DICPU5.250e-1359.32dNK domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A2F0AQ94_9DELT1.110e-1276.19Deoxynucleoside kinase n=1 Tax=Myxococcales bacter... [more]
A0A1J5EAG1_9DELT1.220e-1267.39dNK domain-containing protein n=2 Tax=unclassified... [more]
A0A6U0IGX3_9EUKA2.150e-1271.74Hypothetical protein n=1 Tax=Sexangularia sp. CB-2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81177contigM-pyrifera_M_contig81177:737..913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog5786.XP_003286091.1
KEGG rclassRC00002,RC00017
KEGG koko:K10353
KEGG ReactionR02089
KEGG Pathwayko00230,ko01100,map00230,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.mitochondrial electron transport, NADH to ubiquinone
EggNOG OGsCOG1428@1,KOG3877@2759
EC2.7.1.76
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816717.443152-CDS-M-pyrifera_M_contig81177:736..9131622816717.443152-CDS-M-pyrifera_M_contig81177:736..913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81177 737..913 +
1692278137.634684-CDS-M-pyrifera_M_contig81177:736..9131692278137.634684-CDS-M-pyrifera_M_contig81177:736..913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81177 737..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81177.18984.1prot_M-pyrifera_M_contig81177.18984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81177 737..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81177.18984.1

>prot_M-pyrifera_M_contig81177.18984.1 ID=prot_M-pyrifera_M_contig81177.18984.1|Name=mRNA_M-pyrifera_M_contig81177.18984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MSASSAMTFSETSMEKAFIGISGLIGAGKSTLARELGRVLDLPVFFEPVI
DNTYLADFY
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mRNA from alignment at M-pyrifera_M_contig81177:737..913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81177.18984.1 ID=mRNA_M-pyrifera_M_contig81177.18984.1|Name=mRNA_M-pyrifera_M_contig81177.18984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig81177:737..913+ (Macrocystis pyrifera P11B4 male)
ATGTCTGCCTCTTCTGCGATGACGTTCTCGGAGACAAGCATGGAGAAGGC GTTTATTGGCATCTCTGGCCTGATCGGGGCCGGCAAGAGCACGCTGGCGC GCGAGCTGGGACGGGTCCTGGACCTGCCCGTGTTCTTCGAGCCTGTCATC GACAACACGTACTTGGCCGACTTTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81177:737..913+

>mRNA_M-pyrifera_M_contig81177.18984.1 ID=mRNA_M-pyrifera_M_contig81177.18984.1|Name=mRNA_M-pyrifera_M_contig81177.18984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig81177:737..913+ (Macrocystis pyrifera P11B4 male)
ATGTCTGCCTCTTCTGCGATGACGTTCTCGGAGACAAGCATGGAGAAGGC
GTTTATTGGCATCTCTGGCCTGATCGGGGCCGGCAAGAGCACGCTGGCGC
GCGAGCTGGGACGGGTCCTGGACCTGCCCGTGTTCTTCGAGCCTGTCATC
GACAACACGTACTTGGCCGACTTTTACATGTCTGCCTCTTCTGCGATGAC
GTTCTCGGAGACAAGCATGGAGAAGGCGTTTATTGGCATCTCTGGCCTGA
TCGGGGCCGGCAAGAGCACGCTGGCGCGCGAGCTGGGACGGGTCCTGGAC
CTGCCCGTGTTCTTCGAGCCTGTCATCGACAACACGTACTTGGCCGACTT
TTAC
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