mRNA_M-pyrifera_M_contig810.18944.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig810.18944.1
Unique NamemRNA_M-pyrifera_M_contig810.18944.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig810.18944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig810contigM-pyrifera_M_contig810:26835..27336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size502
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig810.18944.1prot_M-pyrifera_M_contig810.18944.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig810 26963..27316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.9483144-UTR-M-pyrifera_M_contig810:26834..269621622816714.9483144-UTR-M-pyrifera_M_contig810:26834..26962Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig810 26835..26962 +
1692278136.1807764-UTR-M-pyrifera_M_contig810:26834..269621692278136.1807764-UTR-M-pyrifera_M_contig810:26834..26962Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig810 26835..26962 +
1622816714.9730387-UTR-M-pyrifera_M_contig810:27316..273361622816714.9730387-UTR-M-pyrifera_M_contig810:27316..27336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig810 27317..27336 +
1692278136.199832-UTR-M-pyrifera_M_contig810:27316..273361692278136.199832-UTR-M-pyrifera_M_contig810:27316..27336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig810 27317..27336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.9614713-CDS-M-pyrifera_M_contig810:26962..273161622816714.9614713-CDS-M-pyrifera_M_contig810:26962..27316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig810 26963..27316 +
1692278136.1910853-CDS-M-pyrifera_M_contig810:26962..273161692278136.1910853-CDS-M-pyrifera_M_contig810:26962..27316Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig810 26963..27316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig810.18944.1

>prot_M-pyrifera_M_contig810.18944.1 ID=prot_M-pyrifera_M_contig810.18944.1|Name=mRNA_M-pyrifera_M_contig810.18944.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MVATTRFVQCLLRVLVFLLHMIPIEKRRSTANERPPNDKNSLTTAPFNPA
TGGHPPGKPSPTPRLHVCFLPSRKLAPKRGPYDSSAEQISQPTAVCGAAV
TTLNCDTAEHPTATVAA*
back to top

mRNA from alignment at M-pyrifera_M_contig810:26835..27336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig810.18944.1 ID=mRNA_M-pyrifera_M_contig810.18944.1|Name=mRNA_M-pyrifera_M_contig810.18944.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=502bp|location=Sequence derived from alignment at M-pyrifera_M_contig810:26835..27336+ (Macrocystis pyrifera P11B4 male)
GCCATGCAGCAGCCGCAGATTACATATATATGGTAAAACAGGGAGGCTCT
GGGGGGGCGAAGATTAAAAAATAAAAAAAAAGACACGTTGCACCGAATGA
CACGTGCGGTGCTACTGTGTTAACAACGATGGTCGCAACAACCAGGTTTG
TTCAATGCTTGCTACGAGTACTCGTATTTTTACTGCATATGATACCGATC
GAAAAAAGACGATCGACGGCCAACGAACGGCCTCCAAATGACAAAAATTC
GCTAACTACGGCCCCGTTCAACCCCGCCACTGGGGGTCACCCCCCTGGGA
AACCTTCGCCAACGCCGCGTCTCCATGTGTGTTTCCTTCCGTCCCGCAAA
CTAGCGCCCAAACGTGGCCCGTACGACTCTTCGGCGGAGCAAATAAGCCA
ACCAACCGCTGTCTGTGGAGCTGCCGTCACCACACTCAACTGCGACACGG
CGGAACACCCAACTGCCACGGTCGCGGCGTGAGCAAGCAAGCCAGGACCC
AG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig810:26835..27336+

>mRNA_M-pyrifera_M_contig810.18944.1 ID=mRNA_M-pyrifera_M_contig810.18944.1|Name=mRNA_M-pyrifera_M_contig810.18944.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig810:26835..27336+ (Macrocystis pyrifera P11B4 male)
ATGGTCGCAACAACCAGGTTTGTTCAATGCTTGCTACGAGTACTCGTATT
TTTACTGCATATGATACCGATCGAAAAAAGACGATCGACGGCCAACGAAC
GGCCTCCAAATGACAAAAATTCGCTAACTACGGCCCCGTTCAACCCCGCC
ACTGGGGGTCACCCCCCTGGGAAACCTTCGCCAACGCCGCGTCTCCATGT
GTGTTTCCTTCCGTCCCGCAAACTAGCGCCCAAACGTGGCCCGTACGACT
CTTCGGCGGAGCAAATAAGCCAACCAACCGCTGTCTGTGGAGCTGCCGTC
ACCACACTCAACTGCGACACGGCGGAACACCCAACTGCCACGGTCGCGGC
GTGAATGGTCGCAACAACCAGGTTTGTTCAATGCTTGCTACGAGTACTCG
TATTTTTACTGCATATGATACCGATCGAAAAAAGACGATCGACGGCCAAC
GAACGGCCTCCAAATGACAAAAATTCGCTAACTACGGCCCCGTTCAACCC
CGCCACTGGGGGTCACCCCCCTGGGAAACCTTCGCCAACGCCGCGTCTCC
ATGTGTGTTTCCTTCCGTCCCGCAAACTAGCGCCCAAACGTGGCCCGTAC
GACTCTTCGGCGGAGCAAATAAGCCAACCAACCGCTGTCTGTGGAGCTGC
CGTCACCACACTCAACTGCGACACGGCGGAACACCCAACTGCCACGGTCG
CGGCGTGA
back to top