mRNA_M-pyrifera_M_contig80971.18939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80971.18939.1
Unique NamemRNA_M-pyrifera_M_contig80971.18939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A5A8EHW5_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHW5_CAFRO)

HSP 1 Score: 165 bits (418), Expect = 1.510e-42
Identity = 109/263 (41.44%), Postives = 140/263 (53.23%), Query Frame = 1
Query:   37 HDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAFAAVQ 825
            HDA VA W  K+RE+YD AE+ VL   R LR  L  +   V++ L+ LED + A+ M R +V   W +V GLE  R A                  ELG ELR +   L  + H +P  +ER V ++AADVN L L NR D   + AKL       RAA   RWE A Q+WR +RH DA++R    L     V+PPAR  A A L   Q  +HE+  LP  R LA+LRPP LT   VAE+R +LE  + A+  A A  F  +Q
Sbjct:  136 HDAAVAAWLVKQREFYDQAEDDVLEAGRALRQQLAELDDEVETRLAALEDPTQAIAMCRQDVTACWAAVEGLEERRVARAEDFKAFLTELENRRCEELGAELRALTSRLSSVGHAQPGAVERIVAKEAADVNALALKNRTDAADIGAKLLATAALSRAANLRRWEAAQQAWRVLRHDDAMERVRERLNSPEFVDPPARVQAAARLREAQGRVHEQVLLPALRRLAALRPPQLTEEAVAEVRAQLEAAADAEAAAAADGFRGIQ 398          
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A812WHB4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WHB4_9DINO)

HSP 1 Score: 144 bits (364), Expect = 1.230e-35
Identity = 108/303 (35.64%), Postives = 141/303 (46.53%), Query Frame = 1
Query:   37 HDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXX----------------------------------------ELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAFAAVQ 825
            HDA VA W  K+RE+YD AE+ VL   R LR  L  +   V++ L+ LED ++A+ M R +V   W +V GLE  R A                                                          +LG ELR +   L  + H +P  +ER V ++AADVN L L NR D   + AKL       RAA   RWE A Q+WR +RH DA++R    L     V+PPAR  A A L   Q  +HE+  LP  R LA+LRPP LT   VAE+R +LE  + A+  A A  F  +Q
Sbjct:  189 HDAAVAAWLVKQREFYDQAEDDVLEAGRALRQQLAELDDEVETRLAALEDPTHAIAMCRQDVTACWAAVEGLEERRVARAEDFKAFLTELENRRCEHPAPLAALLASCAPGRPRFQPXXXXXXXASSLLRLWPPRGKLGAELRALTSRLSSVGHAQPGAVERIVAKEAADVNALALKNRTDAADIGAKLLATAALSRAANLRRWEAAQQAWRVLRHDDAMERVRERLNSPEFVDPPARVQAAARLREAQGRVHEQVLLPALRRLAALRPPQLTEEAVAEVRAQLEAAADAEAAAAADGFRGIQ 491          
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: W4GMB2_9STRA (Uncharacterized protein n=16 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMB2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.070e-8
Identity = 64/266 (24.06%), Postives = 117/266 (43.98%), Query Frame = 1
Query:   16 ARDRRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
            A+ RR RH A  +++  + +   D  E  +L  S  ++  L  V+A   +  + L D    ++   A V   W  +  L + R                      G EL+ +    +  A+  PP +ER +E++A ++N ++++NR     LV+++ K+ V +    +  WE   + WR + H  A+    A LE     +PP     L  L A+Q ++H  +RL L  +L  L    L+  +V  +   L ++ + +   +AA F
Sbjct:  113 AKRRRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378          
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A3L6VXJ8_9STRA (DUF4455 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VXJ8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.170e-8
Identity = 63/263 (23.95%), Postives = 115/263 (43.73%), Query Frame = 1
Query:   25 RRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
            RR RH A  +++  + +   D  E  +L  S  ++  L  V+A   +  + L D    ++   A V   W  +  L + R                      G EL+ +    +  A+  PP +ER +E++A ++N ++++NR     LV+++ K+ V +    +  WE   + WR + H  A+    A LE     +PP     L  L A+Q ++H  +RL L  +L  L    L+  +V  +   L ++ + +   +AA F
Sbjct:  116 RRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378          
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Match: A0A6A5AGW2_9STRA (DUF4455 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AGW2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.420e-8
Identity = 63/263 (23.95%), Postives = 115/263 (43.73%), Query Frame = 1
Query:   25 RRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVSARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAXXXXXXXXXXXXXXXXXXELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSNRGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLEGSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVAELRRKLEELSQAQNMAHAAAF 813
            RR RH A  +++  + +   D  E  +L  S  ++  L  V+A   +  + L D    ++   A V   W  +  L + R                      G EL+ +    +  A+  PP +ER +E++A ++N ++++NR     LV+++ K+ V +    +  WE   + WR + H  A+    A LE     +PP     L  L A+Q ++H  +RL L  +L  L    L+  +V  +   L ++ + +   +AA F
Sbjct:  116 RRDRHTAAQSQYQLRLKAISDQLETDILRISDAIKEELAGVAAATANHFALLTDEPWLIQASHAMVVDQWTHLNELWSGRTCTIRHFGDGLEAIEQTRSALAGAELQLLTETCVAAAYVLPPEVERAIEDEAHELNVVLITNRRSHCHLVSRMLKEDVHKFVNVRTTWEDCERHWRVLNHDHAIHMFKATLESDLYTHPPRLHAILEKLRADQVAVHTNERLALLSQLDGLVTGGLSTEKVQRMVSALADMYKKEEERNAAYF 378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80971.18939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5A8EHW5_CAFRO1.510e-4241.44Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812WHB4_9DINO1.230e-3535.64Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
W4GMB2_9STRA5.070e-824.06Uncharacterized protein n=16 Tax=Aphanomyces astac... [more]
A0A3L6VXJ8_9STRA7.170e-823.95DUF4455 domain-containing protein (Fragment) n=1 T... [more]
A0A6A5AGW2_9STRA7.420e-823.95DUF4455 domain-containing protein n=1 Tax=Aphanomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80971contigM-pyrifera_M_contig80971:115..939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue5.5e-14
Seed eggNOG ortholog67593.Physo127347
Preferred namePOLR3H
KEGG rclassRC02795
KEGG koko:K03022
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGs3Q9Q5@4776,COG1095@1,KOG3297@2759
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons1
Model size825
Cds size825
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816714.4688332-CDS-M-pyrifera_M_contig80971:114..9391622816714.4688332-CDS-M-pyrifera_M_contig80971:114..939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80971 115..939 +
1692278136.091762-CDS-M-pyrifera_M_contig80971:114..9391692278136.091762-CDS-M-pyrifera_M_contig80971:114..939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80971 115..939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80971.18939.1prot_M-pyrifera_M_contig80971.18939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80971 115..939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80971.18939.1

>prot_M-pyrifera_M_contig80971.18939.1 ID=prot_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp
RLQELARDRRRRHDAMVARWGEKRREWYDDAEEAVLTRSRELRIALERVS
ARVDSELSRLEDASNAVKMERAEVDGVWDSVAGLEASRGAEVQGFWDDLN
ALEDRRAAELGLELRKVAGELMEIAHRRPPVIERWVEEQAADVNKLVLSN
RGDTDALVAKLRKQCVRQRAAAKARWEKASQSWREVRHKDALQRAIADLE
GSSAVNPPARRHALASLSAEQRSMHEKQRLPLFRELASLRPPHLTGVRVA
ELRRKLEELSQAQNMAHAAAFAAVQ
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mRNA from alignment at M-pyrifera_M_contig80971:115..939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80971.18939.1 ID=mRNA_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=825bp|location=Sequence derived from alignment at M-pyrifera_M_contig80971:115..939+ (Macrocystis pyrifera P11B4 male)
CGGTTACAAGAGCTTGCTCGTGATCGAAGAAGAAGGCATGATGCCATGGT TGCTCGTTGGGGTGAGAAGAGGAGGGAATGGTATGATGATGCAGAGGAAG CTGTCCTGACTCGTAGTCGTGAATTACGGATTGCATTGGAGAGAGTAAGT GCGAGAGTTGACAGTGAGCTTTCGAGGCTGGAAGATGCATCCAATGCTGT AAAGATGGAGCGTGCGGAAGTAGATGGAGTTTGGGATTCTGTGGCAGGAT TGGAAGCCAGTCGTGGGGCTGAGGTGCAAGGGTTTTGGGATGATCTCAAT GCGTTGGAAGATCGACGTGCTGCTGAGCTTGGATTGGAGTTGAGAAAAGT TGCTGGTGAGTTGATGGAAATTGCACATCGCAGACCTCCAGTTATCGAAC GGTGGGTGGAAGAACAAGCTGCTGATGTGAACAAGCTTGTGTTGTCGAAT CGTGGAGATACAGATGCACTTGTTGCCAAGTTGAGGAAACAATGTGTGAG ACAACGAGCTGCTGCGAAAGCAAGGTGGGAAAAGGCAAGCCAGAGTTGGC GAGAAGTACGACACAAAGATGCACTCCAGCGTGCGATTGCAGACTTGGAA GGTTCAAGTGCTGTCAACCCTCCTGCAAGACGACATGCTTTAGCTTCTTT GTCTGCAGAGCAACGATCGATGCACGAAAAGCAACGCTTACCATTGTTTC GTGAATTAGCTTCACTTCGTCCGCCACATTTGACAGGAGTGAGGGTTGCA GAATTGCGAAGAAAACTTGAGGAATTGTCACAAGCACAAAACATGGCGCA TGCCGCAGCATTTGCTGCAGTCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80971:115..939+

>mRNA_M-pyrifera_M_contig80971.18939.1 ID=mRNA_M-pyrifera_M_contig80971.18939.1|Name=mRNA_M-pyrifera_M_contig80971.18939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig80971:115..939+ (Macrocystis pyrifera P11B4 male)
CGGTTACAAGAGCTTGCTCGTGATCGAAGAAGAAGGCATGATGCCATGGT
TGCTCGTTGGGGTGAGAAGAGGAGGGAATGGTATGATGATGCAGAGGAAG
CTGTCCTGACTCGTAGTCGTGAATTACGGATTGCATTGGAGAGAGTAAGT
GCGAGAGTTGACAGTGAGCTTTCGAGGCTGGAAGATGCATCCAATGCTGT
AAAGATGGAGCGTGCGGAAGTAGATGGAGTTTGGGATTCTGTGGCAGGAT
TGGAAGCCAGTCGTGGGGCTGAGGTGCAAGGGTTTTGGGATGATCTCAAT
GCGTTGGAAGATCGACGTGCTGCTGAGCTTGGATTGGAGTTGAGAAAAGT
TGCTGGTGAGTTGATGGAAATTGCACATCGCAGACCTCCAGTTATCGAAC
GGTGGGTGGAAGAACAAGCTGCTGATGTGAACAAGCTTGTGTTGTCGAAT
CGTGGAGATACAGATGCACTTGTTGCCAAGTTGAGGAAACAATGTGTGAG
ACAACGAGCTGCTGCGAAAGCAAGGTGGGAAAAGGCAAGCCAGAGTTGGC
GAGAAGTACGACACAAAGATGCACTCCAGCGTGCGATTGCAGACTTGGAA
GGTTCAAGTGCTGTCAACCCTCCTGCAAGACGACATGCTTTAGCTTCTTT
GTCTGCAGAGCAACGATCGATGCACGAAAAGCAACGCTTACCATTGTTTC
GTGAATTAGCTTCACTTCGTCCGCCACATTTGACAGGAGTGAGGGTTGCA
GAATTGCGAAGAAAACTTGAGGAATTGTCACAAGCACAAAACATGGCGCA
TGCCGCAGCATTTGCTGCAGTCCAACGGTTACAAGAGCTTGCTCGTGATC
GAAGAAGAAGGCATGATGCCATGGTTGCTCGTTGGGGTGAGAAGAGGAGG
GAATGGTATGATGATGCAGAGGAAGCTGTCCTGACTCGTAGTCGTGAATT
ACGGATTGCATTGGAGAGAGTAAGTGCGAGAGTTGACAGTGAGCTTTCGA
GGCTGGAAGATGCATCCAATGCTGTAAAGATGGAGCGTGCGGAAGTAGAT
GGAGTTTGGGATTCTGTGGCAGGATTGGAAGCCAGTCGTGGGGCTGAGGT
GCAAGGGTTTTGGGATGATCTCAATGCGTTGGAAGATCGACGTGCTGCTG
AGCTTGGATTGGAGTTGAGAAAAGTTGCTGGTGAGTTGATGGAAATTGCA
CATCGCAGACCTCCAGTTATCGAACGGTGGGTGGAAGAACAAGCTGCTGA
TGTGAACAAGCTTGTGTTGTCGAATCGTGGAGATACAGATGCACTTGTTG
CCAAGTTGAGGAAACAATGTGTGAGACAACGAGCTGCTGCGAAAGCAAGG
TGGGAAAAGGCAAGCCAGAGTTGGCGAGAAGTACGACACAAAGATGCACT
CCAGCGTGCGATTGCAGACTTGGAAGGTTCAAGTGCTGTCAACCCTCCTG
CAAGACGACATGCTTTAGCTTCTTTGTCTGCAGAGCAACGATCGATGCAC
GAAAAGCAACGCTTACCATTGTTTCGTGAATTAGCTTCACTTCGTCCGCC
ACATTTGACAGGAGTGAGGGTTGCAGAATTGCGAAGAAAACTTGAGGAAT
TGTCACAAGCACAAAACATGGCGCATGCCGCAGCATTTGCTGCAGTCCAA
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