mRNA_M-pyrifera_M_contig80751.18896.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80751.18896.1
Unique NamemRNA_M-pyrifera_M_contig80751.18896.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A5Q2RLM6_9ACTN (DNA helicase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RLM6_9ACTN)

HSP 1 Score: 249 bits (635), Expect = 5.670e-74
Identity = 147/298 (49.33%), Postives = 183/298 (61.41%), Query Frame = 1
Query:   13 VRYSPATIDAAIVTARDNELPLNDAKSVFVEVLLRDARGQLLA--RGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEH-HLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGLD 897
            VR +   +  A+ TAR   L    A+ VF  +L R     LL   RG A    +    + R    F+ LV++ WP  S  QLVR +LG+ T R R    VL  EE +LLHR  AKK+ DE+WTTAD+ LLDEA A   G+  TYGH+V DEAQDLSAMALR  GRRA GGS+TILGD+AQ+T  G Q  W  V + LG  PAA+   EL VGYRVPGP+LD A+RLLP  APD+ PS S+R+ G  P    + +G E+PA VA  AA L G W++IGV+     + AVL AL  AG+D
Sbjct:  315 VRLTADDVAEALATARARRLDDTAAREVFRSLLARRVEALLLPQFRGEAPAG-SDFQGDARADATFRALVNRTWPTTSAGQLVRKVLGTRTLRERVARDVLTAEERDLLHRAPAKKLTDERWTTADVPLLDEAEALVGGVRATYGHIVADEAQDLSAMALRMLGRRAQGGSLTILGDLAQSTAPGGQDRWDVVVDHLG-PPAALHIIELEVGYRVPGPVLDVASRLLPLAAPDVRPSRSVRTAGDPPTFTRVDDGRELPAVVAEIAADLSGTWTSIGVIAPEPHVEAVLDALRAAGVD 610          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A538JK77_9ACTN (DNA helicase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JK77_9ACTN)

HSP 1 Score: 217 bits (553), Expect = 5.710e-62
Identity = 137/310 (44.19%), Postives = 176/310 (56.77%), Query Frame = 1
Query:   10 SVRYSPATIDAAIVTARDNELPLNDAKSVFVEVLLRDARGQLLARGVAQEDLA-RLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMD--------PAAVRR-----RELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGLD 897
            SVR     I A +  A   +LP ND + +F E L+R AR +  AR  A   +    +  LR  ++FK L+D+ WP L    LVR +LG+  +  RA  GVL P E  LL R +  + ADE+WT ADLALLDEA A T+G   TYGHVVVDEAQDL++M LR   RR    SMT+LGD+AQAT VGAQ++W  V + L           P A RR      EL VGYRVP  ILD+ANRLLP  AP + PS S+R+ G  P         +   VA    AL   W+T+GV+     ++++ AAL  A +D
Sbjct:  308 SVRLPAPQIAALVDIALGRDLPSNDRRELFRERLVRLARQRYEARPGADLSVEPAFVASLRAGRDFKALLDRTWPSLRAPALVRSVLGNRHTLSRAADGVLEPAEQALLLRRNTARAADERWTRADLALLDEAEALTTGTPVTYGHVVVDEAQDLTSMELRLLARRTPERSMTVLGDLAQATAVGAQSNWDDVLHHLVAQEARQTVVAPEAERRSRARIEELGVGYRVPAAILDFANRLLPVAAPHLRPSRSVRTAGDPPLVLSVATDGLAHAVATEVGALAQRWTTVGVIAPMSGLDSIAAALRAAAID 617          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A349B0F1_9ACTN (DNA helicase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0F1_9ACTN)

HSP 1 Score: 208 bits (530), Expect = 1.600e-59
Identity = 125/265 (47.17%), Postives = 158/265 (59.62%), Query Frame = 1
Query:  124 RGQLLARGVAQEDLARLLPEL--------RTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGL 894
            R QLL R     + +  +P L        R+   F R +D++WP L+   LV+ LL +  +RRRAT G+L  EE++LL RP   + AD +W  A++ LLDEA A   G+  TYGH++VDEAQDLSAMALR   RRA GGSMT++GD+AQAT    Q SW  V  GL    AA  R ELTVGYR P PILD ANRLLP  APD+TP+ SIR  G  P        E+ AT A A A   G+  T+ VV      + + +AL DAG+
Sbjct:  238 RNQLLHRAYELHERSAEVPALKANFVAAARSDAGFARYLDRLWPTLAATTLVQRLLTNRAARRRATDGLLSAEESDLLARPLPSRKADVRWWPAEVPLLDEAEARLHGVRTTYGHIIVDEAQDLSAMALRMLARRAHGGSMTVVGDLAQATRAWGQASWDDVV-GLLQGAAAPARAELTVGYRTPAPILDLANRLLPVAAPDVTPARSIRKTGEAPVLVPTTESELAATSAGAVADAAGERGTVAVVATAGHHDELASALDDAGI 501          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: UPI001C627ADE (AAA family ATPase n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C627ADE)

HSP 1 Score: 199 bits (505), Expect = 6.010e-55
Identity = 116/246 (47.15%), Postives = 148/246 (60.16%), Query Frame = 1
Query:  178 PEL----RTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPE-VPATVARAAAALGGDWSTIGVVVM-PDRMNAVLAALHDAGLD 897
            PEL    RTS + +R + ++WP   G  LVR LL S  + RRA  G+L  +E  L+ RP+A  + DE+WT A+  L+DEA A   G+ RTYGH+V DEAQDLS MALRA  RR    SMTILGD+AQAT  GA  SW      LG  P A RR +LTVGYRVP   ++ A+RLLP  AP +TP+ S+R  G  P       P+ + A    A   L   W+++GV+V  PDR + V  AL  AG+D
Sbjct:  394 PELEAAVRTSDDLRRALTRLWPSARGPALVRRLLTSRAALRRAAAGILDADEQALVLRPAAASLDDERWTVAEAVLVDEAGARIDGVPRTYGHLVADEAQDLSPMALRALARRCPSASMTILGDLAQATEPGATASWDEALRHLGSPPTA-RREDLTVGYRVPAAAMELADRLLPRVAPGLTPTVSVRVGGRPPRLEAVTEPDALEAAAVAAVRRLATGWASVGVIVPGPDRRDGVAGALLAAGVD 638          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A7V9GFN0_9ACTN (DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GFN0_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 3.450e-48
Identity = 121/295 (41.02%), Postives = 156/295 (52.88%), Query Frame = 1
Query:   13 VRYSPATIDAAIVTARDNELPLNDAKSVFVEVLLRDARGQL-LARGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAA-VRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLA---EGPEVPATVARAAAA-LGGDWSTIGVVVMPDRMNAVLAAL 879
            VR     +  A+       +P N  +      LLR AR  +   RG        L   L   + F +++  +WP  +   L+R LL    +   A+ GVL  +E  L+ RP A+ +ADE+WT A+   LDEA +   G   TYGH++VDEAQDL+AMALRA  RR   GSMT+LGD+AQAT  G Q SW      L     A VR  EL +GYRVP PIL+ ANRLL   AP I P+ S+R+ GP P    A   +G + PA VA AAA    G   ++GVV  P    AV A L
Sbjct:  311 VRIDADELADAVDEVAARGVPSNIGRVALRTRLLRLARADVDRRRGEGVVPAGALEGSLPRDRAFVKVLHGLWPATTAPALMRRLLSKGRALAEASAGVLDDDERALVRRPVARGLADERWTHAEQVALDEAASLLDGATTTYGHIIVDEAQDLTAMALRALARRCPSGSMTVLGDLAQATAPGGQRSWDEALRELASPTGAPVRLVELELGYRVPAPILEVANRLLAEAAPHIRPARSVRTHGPAPVFLAAGGADGADGPAAVAVAAAVERAGRGHSVGVVATPTYAAAVTALL 605          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: UPI0013E0926C (AAA family ATPase n=1 Tax=Modestobacter sp. KNN46-3 TaxID=2711218 RepID=UPI0013E0926C)

HSP 1 Score: 179 bits (454), Expect = 1.330e-47
Identity = 121/294 (41.16%), Postives = 151/294 (51.36%), Query Frame = 1
Query:   34 IDAAIVTARDNELPLNDAKSVFVEVLLRDA-RGQLLARGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPEVPATVARAAAALGGDWS---TIGVVVMPDRMNAVLA----ALHDAG 891
            + A +  A   +LP N  + V   +L   A R    A+  A   +    P +R    F   +D++WP  +  +L+R L G+ T    AT GVL  +E   L R     I DE WT ADL  LDE +   +G GRTYGHVVVDEAQDLS M  RA  RR   GS T+LGD+AQATG   + +WH +T  LG D  ++   ELT+GYRVPGP++D A RLLPT AP +    SIR    EP  HL         V RA      D +   T  VVV       VLA     L DAG
Sbjct:  325 VRALVADAASRDLPHNQTRDVLRRLLSAAAFRAHSEAQAAAGRAVIATEPAIRRLSTFTNALDRMWPTFTPEELLRSLYGTQTWLVNATTGVLSADERASLFRDPQPGIDDEPWTQADLFCLDELSFLLNGDGRTYGHVVVDEAQDLSPMHARALARRCPNGSFTLLGDLAQATGPWIRDNWHELTQYLGDDSPSIE--ELTIGYRVPGPVVDLAARLLPTIAPSLAAPRSIRRGLGEPSVHLGPDDGSSGVVERATLLAEADVNAGLTTAVVVADAAFADVLAQIRQGLPDAG 616          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A495JEY1_9ACTN (DNA helicase n=1 Tax=Micromonospora pisi TaxID=589240 RepID=A0A495JEY1_9ACTN)

HSP 1 Score: 169 bits (428), Expect = 4.070e-44
Identity = 117/297 (39.39%), Postives = 148/297 (49.83%), Query Frame = 1
Query:    7 RSVRYSPATIDAAIVTARDNELPLNDAKSVFVEVLLRDARGQLLARGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGLD 897
            R V    A +  A+  AR  ELP    + +F     RD  GQ++A        A              LV+++WP  +    +R LLGS +  R A       EE   LHR SA +++ E W+ ADLALLDE +   +G GR YGHVVVDEAQDLS M LRA GRR+A GS T++GDIAQ+TG  A+ SW  VT  L   P  V    L  GYRVP P  + A RLLP  AP +T    +R    EP  H     E P  V   A         +G+V  P     V AAL + G++
Sbjct:  297 RFVTVPGAEVAEALDHARAAELPYLGRRQLF-----RDRLGQIVADRTGGAAPA-------GGSALANLVERLWPQQTAPAFLRDLLGSRSRLRAAAGTDFTAEELTHLHRRSADRLSQELWSAADLALLDELDHLVNGAGRRYGHVVVDEAQDLSPMQLRAVGRRSANGSFTVVGDIAQSTGAWARDSWDEVTRHL-PTPHPVTVTALRYGYRVPRPAYELAARLLPVAAPGVTAPEVVRDGPAEPRTHRVGLTERPGRVVAVALEHAAAGRFVGIVCPPRCRREVEAALAENGVE 580          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A1G7TKR7_9ACTN (DNA helicase n=2 Tax=Klenkia brasiliensis TaxID=333142 RepID=A0A1G7TKR7_9ACTN)

HSP 1 Score: 167 bits (422), Expect = 3.760e-43
Identity = 113/276 (40.94%), Postives = 148/276 (53.62%), Query Frame = 1
Query:   46 IVTARDNELPLNDAKSVFVEVLLRDA-RGQLLARGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLA--EGPEVPATVARAAAALGGDWSTIGVVVMPDRMNA 864
            +  A    LP N A+ V  + L   A R    A+  A   +    P LR    F   +D++WP L+  +++RG+ G+ T    A  GVL  +E  LL R     I DE WT ADL  LDE +   +G GR+YGHVVVDEAQDLS M  RA  RR   GS T+LGD+AQATG   +  W  +T  L   PA +   +LTVGYRVPGP+++ A  LLP  APD+    S+R     P  H+A     ++ ATV   A+A      T  VVV PD+ +A
Sbjct:  331 VTDAASRRLPHNQARDVLRQSLSAAAFRAYSEAQAAAGRAVIATEPALRRLSTFTNALDRMWPTLTPEEMLRGVYGTQTWLVDAASGVLSADERALLFREPRSSIDDEPWTAADLFCLDELSYLLNGEGRSYGHVVVDEAQDLSPMQARALARRCPSGSFTLLGDLAQATGQWIRDDWQELTVHLHHQPAQIE--DLTVGYRVPGPVVELAAGLLPHIAPDLAVPRSVRQGLGAPTVHVAAQSDADLLATVVTLASADVEAGLTTAVVV-PDQDHA 603          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A6G0A814_9ACTN (DNA helicase n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A814_9ACTN)

HSP 1 Score: 166 bits (419), Expect = 6.160e-43
Identity = 124/313 (39.62%), Postives = 157/313 (50.16%), Query Frame = 1
Query:    1 GLRSVRYSPATIDAA--IVTARDNELPLNDAKSVFVEVLLRDARGQLLARGVAQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIG--------RTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEP----EHHLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGLD 897
            GL+++R+   T+D +  IVT        ++A   FVE    D    L A G  Q D   L    R + E ++ ++ +WP LS AQL+  L GSP     A    L   E  LL+RP A +  D  WT  D+ LLDEA A              RTYGH+V+DEAQDLS M LR   RR+  GSMTI+GDIAQATG  A   W S+   L  D    RR ELT+GYRVPGP ++ A R+L   APD+ P  SIR  G  P      H +    V   V R   AL     T+ V+     +    AAL  AG+D
Sbjct:  306 GLQTLRF---TVDQSLEIVTEARRRFRSHNAARRFVEERFFDV---LAASGRGQVDPKTLRERTRRTLEIRKALEWMWPVLSPAQLLHDLFGSPALLALAAGRHLDASELTLLYRPRAARADDVVWTRQDVPLLDEARARLGPRPAHREEDELRTYGHIVIDEAQDLSPMELRVLKRRSLNGSMTIVGDIAQATGAWAHEDWESILEHL-PDRRPPRRAELTIGYRVPGPSMELAARVLREAAPDLRPPRSIREEGDNPVITPAVHASLAHTVAGEVQRELEALSS--GTLAVIAPESLVADTEAALEAAGVD 609          
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Match: A0A653ZH41_9MICC (DNA helicase n=1 Tax=Arthrobacter sp. 9AX TaxID=2653131 RepID=A0A653ZH41_9MICC)

HSP 1 Score: 163 bits (413), Expect = 8.320e-42
Identity = 100/212 (47.17%), Postives = 126/212 (59.43%), Query Frame = 1
Query:  214 VDKIWPGLSGAQLVRGLLGSPTSRRRATHGVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVVVDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLGMD-PAAVRRR--ELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPEHHLAEGPEVPATVARAAAALGGDWSTIGVV 840
            V+KIWP ++  Q +R LLGS    +RA  G L P+E ELL+R  A+K++DE WTTADLALLDEA A      RTYGH+VVDEAQDLS M LRA  RR+  GSMT++GDIAQ+TG  ++ SW  +   LG   PA V  +  EL  GYRVP  + D A  +L + AP +TP   +R     P        E+   VAR      G    +GVV
Sbjct:  376 VEKIWPQITPQQFLRELLGSRERMKRAAEGHLAPDEMELLYRQQAEKVSDEPWTTADLALLDEAQAAMREAPRTYGHIVVDEAQDLSKMQLRAIRRRSKNGSMTVVGDIAQSTGPYSRDSWDDIAAILGEGTPAQVTSQIAELEHGYRVPKQVFDVALPILQSAAPSVTPPRILRDVEYAPRFAAVPAGELAEEVARTVFMHSGRGRFVGVV 587          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80751.18896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q2RLM6_9ACTN5.670e-7449.33DNA helicase n=1 Tax=Actinomarinicola tropica TaxI... [more]
A0A538JK77_9ACTN5.710e-6244.19DNA helicase n=1 Tax=Actinomycetia bacterium TaxID... [more]
A0A349B0F1_9ACTN1.600e-5947.17DNA helicase n=1 Tax=Acidimicrobiaceae bacterium T... [more]
UPI001C627ADE6.010e-5547.15AAA family ATPase n=1 Tax=Iamia sp. SCSIO 61187 Ta... [more]
A0A7V9GFN0_9ACTN3.450e-4841.02DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxI... [more]
UPI0013E0926C1.330e-4741.16AAA family ATPase n=1 Tax=Modestobacter sp. KNN46-... [more]
A0A495JEY1_9ACTN4.070e-4439.39DNA helicase n=1 Tax=Micromonospora pisi TaxID=589... [more]
A0A1G7TKR7_9ACTN3.760e-4340.94DNA helicase n=2 Tax=Klenkia brasiliensis TaxID=33... [more]
A0A6G0A814_9ACTN6.160e-4339.62DNA helicase n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0... [more]
A0A653ZH41_9MICC8.320e-4247.17DNA helicase n=1 Tax=Arthrobacter sp. 9AX TaxID=26... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80751contigM-pyrifera_M_contig80751:42..938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score156.0
Seed ortholog evalue2.8e-35
Seed eggNOG ortholog1035308.AQYY01000002_gene540
Preferred namehelD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helicase
EggNOG OGs1TP39@1239,249IG@186801,26003@186807,COG3973@1,COG3973@2
COG Functional cat.L
Best tax levelPeptococcaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size897
Cds size897
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.398845-CDS-M-pyrifera_M_contig80751:41..9381622816712.398845-CDS-M-pyrifera_M_contig80751:41..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80751 42..938 +
1692278134.9895713-CDS-M-pyrifera_M_contig80751:41..9381692278134.9895713-CDS-M-pyrifera_M_contig80751:41..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80751 42..938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80751.18896.1prot_M-pyrifera_M_contig80751.18896.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80751 42..938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80751.18896.1

>prot_M-pyrifera_M_contig80751.18896.1 ID=prot_M-pyrifera_M_contig80751.18896.1|Name=mRNA_M-pyrifera_M_contig80751.18896.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=299bp
GLRSVRYSPATIDAAIVTARDNELPLNDAKSVFVEVLLRDARGQLLARGV
AQEDLARLLPELRTSKEFKRLVDKIWPGLSGAQLVRGLLGSPTSRRRATH
GVLHPEEAELLHRPSAKKIADEQWTTADLALLDEANAFTSGIGRTYGHVV
VDEAQDLSAMALRATGRRAAGGSMTILGDIAQATGVGAQTSWHSVTNGLG
MDPAAVRRRELTVGYRVPGPILDYANRLLPTTAPDITPSTSIRSRGPEPE
HHLAEGPEVPATVARAAAALGGDWSTIGVVVMPDRMNAVLAALHDAGLD
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mRNA from alignment at M-pyrifera_M_contig80751:42..938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80751.18896.1 ID=mRNA_M-pyrifera_M_contig80751.18896.1|Name=mRNA_M-pyrifera_M_contig80751.18896.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=897bp|location=Sequence derived from alignment at M-pyrifera_M_contig80751:42..938+ (Macrocystis pyrifera P11B4 male)
GGCCTTCGTTCCGTGCGCTACTCCCCCGCCACGATCGACGCGGCGATCGT CACCGCCCGCGACAACGAACTGCCGCTCAACGACGCCAAGTCGGTGTTCG TCGAAGTGCTGCTGCGAGACGCCCGCGGCCAACTCCTCGCCCGGGGCGTG GCCCAGGAAGACCTCGCGCGGCTGCTGCCCGAACTGCGCACGAGCAAGGA GTTCAAGAGGTTGGTCGACAAAATCTGGCCCGGCCTCAGCGGCGCGCAGC TCGTACGCGGCCTGCTCGGAAGCCCCACGAGTCGGCGCCGCGCGACTCAC GGTGTCCTCCACCCCGAAGAGGCCGAGCTCCTCCACCGGCCGTCGGCCAA GAAGATCGCCGACGAGCAATGGACAACGGCCGATCTCGCCCTGCTCGACG AGGCCAACGCCTTCACGAGCGGGATCGGACGGACCTACGGCCATGTCGTG GTGGACGAGGCGCAAGACCTCTCGGCGATGGCCTTGCGGGCGACCGGGCG ACGCGCCGCCGGAGGCTCGATGACGATTCTCGGCGACATCGCGCAGGCGA CCGGCGTGGGCGCACAAACCTCGTGGCACTCGGTGACGAACGGCCTCGGG ATGGATCCGGCCGCCGTACGGCGACGCGAGTTGACGGTCGGCTATCGCGT GCCCGGCCCGATCCTCGACTACGCCAACCGACTGCTGCCCACCACGGCGC CCGACATCACCCCCTCTACCTCGATCCGCAGCCGCGGCCCCGAACCCGAA CATCACCTGGCGGAGGGCCCGGAGGTCCCGGCGACCGTGGCCCGCGCCGC CGCGGCGCTCGGCGGCGACTGGTCGACCATCGGCGTGGTCGTGATGCCGG ACCGAATGAACGCCGTGCTCGCCGCGCTCCACGACGCAGGACTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80751:42..938+

>mRNA_M-pyrifera_M_contig80751.18896.1 ID=mRNA_M-pyrifera_M_contig80751.18896.1|Name=mRNA_M-pyrifera_M_contig80751.18896.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1794bp|location=Sequence derived from alignment at M-pyrifera_M_contig80751:42..938+ (Macrocystis pyrifera P11B4 male)
GGCCTTCGTTCCGTGCGCTACTCCCCCGCCACGATCGACGCGGCGATCGT
CACCGCCCGCGACAACGAACTGCCGCTCAACGACGCCAAGTCGGTGTTCG
TCGAAGTGCTGCTGCGAGACGCCCGCGGCCAACTCCTCGCCCGGGGCGTG
GCCCAGGAAGACCTCGCGCGGCTGCTGCCCGAACTGCGCACGAGCAAGGA
GTTCAAGAGGTTGGTCGACAAAATCTGGCCCGGCCTCAGCGGCGCGCAGC
TCGTACGCGGCCTGCTCGGAAGCCCCACGAGTCGGCGCCGCGCGACTCAC
GGTGTCCTCCACCCCGAAGAGGCCGAGCTCCTCCACCGGCCGTCGGCCAA
GAAGATCGCCGACGAGCAATGGACAACGGCCGATCTCGCCCTGCTCGACG
AGGCCAACGCCTTCACGAGCGGGATCGGACGGACCTACGGCCATGTCGTG
GTGGACGAGGCGCAAGACCTCTCGGCGATGGCCTTGCGGGCGACCGGGCG
ACGCGCCGCCGGAGGCTCGATGACGATTCTCGGCGACATCGCGCAGGCGA
CCGGCGTGGGCGCACAAACCTCGTGGCACTCGGTGACGAACGGCCTCGGG
ATGGATCCGGCCGCCGTACGGCGACGCGAGTTGACGGTCGGCTATCGCGT
GCCCGGCCCGATCCTCGACTACGCCAACCGACTGCTGCCCACCACGGCGC
CCGACATCACCCCCTCTACCTCGATCCGCAGCCGCGGCCCCGAACCCGAA
CATCACCTGGCGGAGGGCCCGGAGGTCCCGGCGACCGTGGCCCGCGCCGC
CGCGGCGCTCGGCGGCGACTGGTCGACCATCGGCGTGGTCGTGATGCCGG
ACCGAATGAACGCCGTGCTCGCCGCGCTCCACGACGCAGGACTCGACGGC
CTTCGTTCCGTGCGCTACTCCCCCGCCACGATCGACGCGGCGATCGTCAC
CGCCCGCGACAACGAACTGCCGCTCAACGACGCCAAGTCGGTGTTCGTCG
AAGTGCTGCTGCGAGACGCCCGCGGCCAACTCCTCGCCCGGGGCGTGGCC
CAGGAAGACCTCGCGCGGCTGCTGCCCGAACTGCGCACGAGCAAGGAGTT
CAAGAGGTTGGTCGACAAAATCTGGCCCGGCCTCAGCGGCGCGCAGCTCG
TACGCGGCCTGCTCGGAAGCCCCACGAGTCGGCGCCGCGCGACTCACGGT
GTCCTCCACCCCGAAGAGGCCGAGCTCCTCCACCGGCCGTCGGCCAAGAA
GATCGCCGACGAGCAATGGACAACGGCCGATCTCGCCCTGCTCGACGAGG
CCAACGCCTTCACGAGCGGGATCGGACGGACCTACGGCCATGTCGTGGTG
GACGAGGCGCAAGACCTCTCGGCGATGGCCTTGCGGGCGACCGGGCGACG
CGCCGCCGGAGGCTCGATGACGATTCTCGGCGACATCGCGCAGGCGACCG
GCGTGGGCGCACAAACCTCGTGGCACTCGGTGACGAACGGCCTCGGGATG
GATCCGGCCGCCGTACGGCGACGCGAGTTGACGGTCGGCTATCGCGTGCC
CGGCCCGATCCTCGACTACGCCAACCGACTGCTGCCCACCACGGCGCCCG
ACATCACCCCCTCTACCTCGATCCGCAGCCGCGGCCCCGAACCCGAACAT
CACCTGGCGGAGGGCCCGGAGGTCCCGGCGACCGTGGCCCGCGCCGCCGC
GGCGCTCGGCGGCGACTGGTCGACCATCGGCGTGGTCGTGATGCCGGACC
GAATGAACGCCGTGCTCGCCGCGCTCCACGACGCAGGACTCGAC
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