mRNA_M-pyrifera_M_contig80725.18890.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80725.18890.1
Unique NamemRNA_M-pyrifera_M_contig80725.18890.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80725.18890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80725contigM-pyrifera_M_contig80725:32..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog115417.EPrPW00000019816
KEGG koko:K11968
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009653,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0030154,GO:0030162,GO:0030435,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031624,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032502,GO:0032991,GO:0036211,GO:0042176,GO:0043170,GO:0043412,GO:0043934,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044390,GO:0044424,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901800,GO:1902494,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1990234,GO:2000058,GO:2000060
EggNOG free text desc.Transcription factor. Source PGD
EggNOG OGs1ME2G@121069,KOG1815@1,KOG1815@2759
EC2.3.2.31
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size297
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.133734-UTR-M-pyrifera_M_contig80725:31..521622816712.133734-UTR-M-pyrifera_M_contig80725:31..52Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80725 32..52 +
1692278134.8829288-UTR-M-pyrifera_M_contig80725:31..521692278134.8829288-UTR-M-pyrifera_M_contig80725:31..52Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig80725 32..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816712.1481202-CDS-M-pyrifera_M_contig80725:52..3281622816712.1481202-CDS-M-pyrifera_M_contig80725:52..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80725 53..328 +
1692278134.8935413-CDS-M-pyrifera_M_contig80725:52..3281692278134.8935413-CDS-M-pyrifera_M_contig80725:52..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80725 53..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80725.18890.1prot_M-pyrifera_M_contig80725.18890.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80725 53..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80725.18890.1

>prot_M-pyrifera_M_contig80725.18890.1 ID=prot_M-pyrifera_M_contig80725.18890.1|Name=mRNA_M-pyrifera_M_contig80725.18890.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MMDHSCEGPGCNASFCLRCGQASEAHEERVCESALAEKEKEEESLQITRE
GAQRCPHCLIYTVKEAGCDWIKCGRCTHEWCWVGSSWSANFC
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mRNA from alignment at M-pyrifera_M_contig80725:32..328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80725.18890.1 ID=mRNA_M-pyrifera_M_contig80725.18890.1|Name=mRNA_M-pyrifera_M_contig80725.18890.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig80725:32..328+ (Macrocystis pyrifera P11B4 male)
GAGTCAAGGCCTGGCGGGGTGATGATGGATCACTCTTGCGAGGGCCCCGG
CTGCAACGCCAGCTTTTGTCTGAGGTGTGGGCAGGCGAGCGAAGCTCATG
AAGAGAGAGTCTGTGAGAGTGCTTTGGCAGAGAAAGAGAAGGAGGAAGAG
TCTCTGCAGATTACGCGGGAAGGGGCGCAGAGATGCCCACATTGCCTCAT
TTACACTGTAAAGGAGGCTGGCTGTGACTGGATCAAGTGTGGGAGGTGCA
CTCACGAGTGGTGTTGGGTAGGTAGTTCCTGGAGCGCCAATTTTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80725:32..328+

>mRNA_M-pyrifera_M_contig80725.18890.1 ID=mRNA_M-pyrifera_M_contig80725.18890.1|Name=mRNA_M-pyrifera_M_contig80725.18890.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig80725:32..328+ (Macrocystis pyrifera P11B4 male)
ATGATGGATCACTCTTGCGAGGGCCCCGGCTGCAACGCCAGCTTTTGTCT
GAGGTGTGGGCAGGCGAGCGAAGCTCATGAAGAGAGAGTCTGTGAGAGTG
CTTTGGCAGAGAAAGAGAAGGAGGAAGAGTCTCTGCAGATTACGCGGGAA
GGGGCGCAGAGATGCCCACATTGCCTCATTTACACTGTAAAGGAGGCTGG
CTGTGACTGGATCAAGTGTGGGAGGTGCACTCACGAGTGGTGTTGGGTAG
GTAGTTCCTGGAGCGCCAATTTTTGCATGATGGATCACTCTTGCGAGGGC
CCCGGCTGCAACGCCAGCTTTTGTCTGAGGTGTGGGCAGGCGAGCGAAGC
TCATGAAGAGAGAGTCTGTGAGAGTGCTTTGGCAGAGAAAGAGAAGGAGG
AAGAGTCTCTGCAGATTACGCGGGAAGGGGCGCAGAGATGCCCACATTGC
CTCATTTACACTGTAAAGGAGGCTGGCTGTGACTGGATCAAGTGTGGGAG
GTGCACTCACGAGTGGTGTTGGGTAGGTAGTTCCTGGAGCGCCAATTTTT
GC
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