mRNA_M-pyrifera_M_contig80565.18867.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig80565.18867.1
Unique NamemRNA_M-pyrifera_M_contig80565.18867.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A538RXH7_9BACT (Peptidase_M56 domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A538RXH7_9BACT)

HSP 1 Score: 164 bits (414), Expect = 5.250e-43
Identity = 108/296 (36.49%), Postives = 145/296 (48.99%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPL----------------------------QPALSPLYSSTALGEPASPAEAQASQQD---HPTRLPAASGKPGRSTTQPPPTIPSWVQPIPWRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            M  L+  A++NA+ A ILA++V +  +++  P     LWLLV +KL+TPPLW + L                            +PALS    S  +  P   AEA A+  D    PT  PAAS                 V P+ W  +V A W  GS  W L+A  R+ RF + LR         ++    +A  +GL   P +    A V PM+W I T P +L+P+ LL   S  +   L++HE AHL+RRDHWVR  E+ V SLYWWHP  W ARR  R+ EE CCDA V+
Sbjct:    1 METLLSCALSNAVFATILALLVAVLGRVWRRPALLHSLWLLVFLKLITPPLWPVNLPWRVPADLPVPVQKNSAAGLNEPELRTPEPALSQPNLSDVVVPPTETAEAVAALPDAPPEPTFQPAASXXXXXXXXXXX-XXXXXVPPLSWMSIVVAVWFAGSAFWFLLAGLRLMRFHRLLRFARPASPGLQKHADVLAQRLGLPRAPNVWSVPAVVSPMLWAIATTPRLLIPEPLLGRLSEQQWDTLLAHELAHLRRRDHWVRVLEMLVISLYWWHPVVWWARRELREVEEQCCDAWVV 295          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A7V3G052_9BACT (Peptidase_M56 domain-containing protein (Fragment) n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7V3G052_9BACT)

HSP 1 Score: 158 bits (400), Expect = 4.350e-42
Identity = 104/289 (35.99%), Postives = 143/289 (49.48%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSPLYSSTALGEPASPAEAQASQ----------QDH--------------PTRLPAASGKPGRSTTQPPPTIPSWVQPIPWRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            M  L+ + ++NA+ A +LA++  +  +    P  A  LWLLVL+KL+TPPL  +P++ A   +  ++   E   P     SQ          QD               PT  P A+ K   +   P   +P+  +P+PW  VV   W LGS+ W +V   R+  FQ+ LR         +     +A  +GLR  P + +    V PM+W +  RP +LLP  LL +    +   LI HE AHL RRDHWVR  E  V  LYWWHP  W ARR  RQAEE CCDA V+
Sbjct:    1 MERLLYLGLSNALAATVLALLAYVLGRRSRWPALAHGLWLLVLLKLLTPPLIPVPVRLATPAVAEASTRPETPLPLSESRSQEVVIRLPSLPQDATRPEIPAEPALAAMPTDRPTANEK-APALASPAGVVPTGAEPLPWTQVVLGIWLLGSLLWFVVLCRRVWAFQRMLRFAVPGSPELQAEVAGLAPRLGLRRAPGVWLMPGRVAPMLWALFGRPRLLLPGELLASLDVRQRATLILHELAHLARRDHWVRLLEAVVSGLYWWHPVVWWARRHLRQAEEVCCDAWVV 288          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A517ZHC9_9PLAN (Protease HtpX n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZHC9_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 3.360e-41
Identity = 100/271 (36.90%), Postives = 148/271 (54.61%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSPLYSSTALGEPASPAEAQASQQDHP--TRLPAASGKPGRSTTQPPPTIPSWVQPIPWRMV----VAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            +  L +I +ANA+ A +LA+ V L  ++   P  A  LWLLV +KL+TPPL T+PL+   +P   ST+     +P E   + Q+ P  T + A +  P + T  P P         PWR      +   W  G+  WLL+   R  RF +  R T     + ++    ++TA G++A+P + + +A V P++W IG RP +LLP  LL   +  ++  +++HE AHL+RRDHW R   L V +LYWWHP  W +RR   QA E CCDA V+
Sbjct:    2 LQTLFEIVLANAVLATVLAIGVALFARLCRRPAIAHGLWLLVFLKLITPPLVTVPLEILPAPPVISTSSAVIHAPVETTVAVQEAPIPTAIVATNAAP-QLTAAPQPAG------FPWRNYLVEGIVGLWIAGACGWLLLLGIRAWRFHRMARRTALAPAALQQQVRRLSTAFGVQAVPEVRMIHAQVSPLLWRIGGRPVILLPAELLTQLTPAQIDGILAHELAHLQRRDHWTRRLVLCVTALYWWHPVLWWSRRGLEQAAEQCCDAAVV 265          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A5C1AS49_9BACT (WD40 repeat domain-containing protein n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1AS49_9BACT)

HSP 1 Score: 160 bits (406), Expect = 3.770e-41
Identity = 103/267 (38.58%), Postives = 144/267 (53.93%), Query Frame = 1
Query:   16 DIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSPLYSSTALGEPASPAEAQASQQDHPTRLPAASGKPGRSTTQPP------PTIPSWVQPIPWRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRV-TDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            D   +N I AG+LAV  +   +    P  A VLWLLVLVKLVTPPL+T+P++  L P      + +         +  D P  +  +  +P  +T++ P      PT+P+   P PWR VVA  W  G  AW    V  + RF + LR  T   D   RE+   VA  +GLRA PR+ +   +V P VW +G + T+  P  LL   +A +   +++HE AH+ RRDH VRW E    ++YWW P  W+ARR  R+ EE CCDA+V+
Sbjct:    7 DAIASNLIAAGVLAVAAVACGRWLNRPAVAHVLWLLVLVKLVTPPLFTVPIR-VLPPEELHPVVADSGPEVIVPRTAVDLPEIVIRSQAEPPSATSETPTPAAVTPTVPA-APPFPWRSVVAVVWLAGIAAWAAFTVVHVRRFAKYLRFGTAAPDSFAREVA-DVAARLGLRA-PRVRLLPGEVAPFVWSVG-KTTLYFPHNLLDRLTAEQRATVVAHELAHVWRRDHLVRWLETVTVAVYWWCPLAWLARRELRRLEEDCCDAVVM 268          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A354GY82_9BACT (Peptidase_M56 domain-containing protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GY82_9BACT)

HSP 1 Score: 158 bits (400), Expect = 1.450e-40
Identity = 103/287 (35.89%), Postives = 142/287 (49.48%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPL-WT------LPLQPALS-----------PLYSSTALGEPASPAEAQASQQDHPTRLPAASGKPGRSTTQPPPTIPSWVQP----IP-WRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALV 792
            M  L+ I ++NA+ A ++A+VV+    ++  P     LWLLVLVKLVTPPL W       +P  PA++           PL     +  P S A  +    +    L  +   P   T   P  IP+        +P W  V    W  G+ AW  +A+ R+ RF+Q LR      ES R+    +A  + L+  P + +    V PM+W +G RP +L P  LL+     +   L+ HE AHL+RRDHWVRW E     LYWW+P  W ARR  R+AEE CCDA V
Sbjct:    1 METLLRIGLSNAVVALVMALVVVTVACVWRRPAVLHALWLLVLVKLVTPPLVWVRVPWPIIPDAPAVAVARAAEPAPIEPLPEENTVFVPDSEAMRETPSVEVSNELAVSETLPDALTPLEPLAIPNTQNTTLVLVPGWMAVTCGVWLAGAFAWYALALVRLRRFRQMLRHAVPAPESLRQRTQRLAEKLRLQRCPGVWLVPGRVAPMLWAVGGRPRILFPADLLKQVGREQQNALLVHELAHLRRRDHWVRWLEFAAAGLYWWNPVLWFARRELREAEEQCCDAWV 287          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: UPI00118A494B (M56 family metallopeptidase n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=UPI00118A494B)

HSP 1 Score: 155 bits (393), Expect = 8.200e-40
Identity = 98/271 (36.16%), Postives = 144/271 (53.14%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSPLYSSTALGEPASPAEAQASQQDHPT--RLPAASGKPGRSTTQPPPTIPSWVQPIPWRMV----VAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            +  L +I +ANA+ A +LA+ V L  ++   P  A  LWLLV +KL+TPPL T+PL+   +P   ST+     +P E    + + PT   + A +  P  S T  P   P       WR      +   W  G+  WLL+   R  RF +  R       + ++    ++TA G++A+P + +  A V P++W IG RP +LLP  LL   +  ++  +++HE AHL+RRDHW R   L V +LYWWHP  W +RR   QA E CCDA V+
Sbjct:    2 LQTLFEIVLANAVLATVLAIGVALFARLCRRPAIAHGLWLLVFLKLITPPLVTVPLEILPAPPVISTSSAVIHAPVETTIIEHEAPTPSAIIATTEAPRLSLTPQPAGFP-------WRNYLVEGIVGLWIAGACGWLLLLGIRAWRFHRMARRIALAPVALQQQVRRLSTAFGVQAVPEVRMIQAQVSPLLWRIGGRPVILLPAELLTQLTPAQIDGILAHELAHLQRRDHWTRRLVLCVTALYWWHPVVWWSRRGLEQAAEQCCDAAVV 265          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A2E8D2S0_9PLAN (Peptidase_M56 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D2S0_9PLAN)

HSP 1 Score: 151 bits (382), Expect = 2.200e-39
Identity = 91/255 (35.69%), Postives = 133/255 (52.16%), Query Frame = 1
Query:   55 AVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSPLYSSTALGEPASPAEAQASQQDHPTRLPAASGKPGRSTTQPPPTIPSWVQP---IP---WRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPT--VLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            A++V +A +          LWLLVL+KLVTPPL+ +PL+   SP  +      P  P    +S     +   A+  +PG     P        +P   +P   WR  +   W LG++ +L +  +R+ RFQ+ LR T        E   S+A  + LR  P + ++  +V P+VW +    +  V+ P+TLL   S  +   L++HE AHL+R DHWVRWFEL V +L+WWHP  W ARR   +A + CCDA VL
Sbjct:   31 ALIVAIAARFCRQAPVVFCLWLLVLIKLVTPPLFQVPLELLSSPPQAGFVESMPRQPTAHVSSNLAAESTSSASDSQPGDPYVMPSSVTAGVAEPMLGVPTFYWRECLCVIWCLGTLLYLALVAHRVLRFQRLLRHTTRAPHELCETACSLAKTLKLRCQPWIRITEGNVSPLVWYLAPTESSVVVFPRTLLSQLSPDQQTSLLAHELAHLRRGDHWVRWFELVVTALFWWHPVVWWARRELHRAGDQCCDAWVL 285          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A517WXM8_9PLAN (Regulatory protein BlaR1 n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WXM8_9PLAN)

HSP 1 Score: 154 bits (388), Expect = 3.250e-39
Identity = 103/310 (33.23%), Postives = 157/310 (50.65%), Query Frame = 1
Query:   10 LIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQ-PALSPLYSSTALGEPASPAEAQAS-QQDHPTRLPAASGKPG--------------------------RSTTQPPP-TIPSWVQP--------------IP-----WRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            L +  I+NA+ A ++A++VL+ T+I+ NP  A +LWLLVLVKLV+PPLW + +  P +S  + +    E  S  E+Q S  +  P +L       G                           + +QP P ++ + V P              +P     W + +   W +GS+ W +   YR+  F + +R T    +  + I   VA    LR LP + ++ A + PMVWP      V+LP+ L+     ++L  +++HE+AHL+R DHWVR+ E+ V +LYWW+P  W  RR  R AEE CCDALVL
Sbjct:    5 LFETGISNALVASVMALLVLVITRIWKNPHVAHLLWLLVLVKLVSPPLWHISIPVPHMSAHFQANDTTETLSLNESQISFSKPEPIKLQEVETMSGDLIAAVPNDSLSHLDDTELAKQGFELMAGSQPTPLSVEASVLPQSEGRESLLVFLPELPEETALWWVGLVLFWIVGSLVWTMKFCYRVVEFNRLIRQTLPATDELKSIAEPVANNFSLRQLPDLRLTEAALSPMVWPAAYPSIVVLPKQLVAGMHGNQLVTILAHEFAHLRRADHWVRFLEVVVIALYWWNPVVWWVRRELRAAEEACCDALVL 314          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A517W0G4_9PLAN (Regulatory protein BlaR1 n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W0G4_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 3.080e-37
Identity = 97/310 (31.29%), Postives = 152/310 (49.03%), Query Frame = 1
Query:   10 LIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQ-PALSPLYSSTALGEPASPAEAQAS-QQDHPTRLPAASGKPGRSTT---------------------------QPPPTIPSWVQPIP-------------------WRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            L +  I+NA+ A ++A++VL+ T+I+ +P  A +LWLLVLVKLV+PPLW + +  P +S  + +    E  S  E+Q +  +  P +L       G   T                             P  + + V P P                   W ++    W  GS+ W+++   R+  F + +R T    +  + +   +A  + L  LP + ++ A V P+VWP    P V+LP+ L+     ++L  +++HE+AHL+R DHWVR+ E+ V SLYWW+P     RR  R AEE CCDALVL
Sbjct:    5 LFETGISNALVASVMALLVLVITRIWKSPHVAHLLWLLVLVKLVSPPLWHVSIPVPHMSAHFPAKDATETLSLNESQINFSKPEPLKLEEVETMSGSLVTPVLNDSLSHLDDTELAEQGFELMARSQHVPLAVEASVLPHPEGRESLLPFLPDVPDETVLWWVIPGLVWMAGSLIWIIIFCCRVVEFNRLIRQTLPATDELKSVAGPIAKKLSLSRLPDLRLTEAVVSPLVWPAAYPPNVVLPKQLVDGMHGNQLATILAHEFAHLRRADHWVRFLEVVVVSLYWWNPIVLWVRRELRAAEEACCDALVL 314          
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Match: A0A1N6DHH8_9BACT (Signal transducer regulating beta-lactamase production, contains metallopeptidase domain n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6DHH8_9BACT)

HSP 1 Score: 144 bits (362), Expect = 1.480e-36
Identity = 96/277 (34.66%), Postives = 139/277 (50.18%), Query Frame = 1
Query:    1 MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPPLWTLPLQPALSP---LYSSTALGEPASPAEAQASQQDHPTRLPAA-----SGKPGR----STTQPPPTIPSWVQPIPWRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTDEIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQTLLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARRRSRQAEEYCCDALVL 795
            M  L++IA+ NA+ A  + VV  +   +   P  +  LWLLVL+KL+TPPL   P+ PA  P   L +  A  +P+S      + +   +R  AA     SG  GR    S   P P          W   VA+ W  GS+ W ++A  RI RF++ LR         +     ++  +G+   PR+ V+   + P +W I     ++LP  LL+     E   L++HE AHL+R D+WVR  EL    L+WWHP  W ARR   +AEEYCCD+ V+
Sbjct:    1 MRWLLEIALTNAVMATAIGVVAGVVGGVCRRPALSHCLWLLVLLKLITPPLLLFPMPPATPPSIGLGAGAAPSDPSSRERLGLTGRTRDSRPSAATPGDRSGGRGRQPRESRDYPAPVAAEPAAVASWVTWVASVWLTGSVFWFVMAALRIRRFRRFLRHALPAPPELQGRAQELSGRLGVSLCPRVYVTPLPISPSLWGIRRAVRLVLPADLLRCLEPEERDTLLAHELAHLRRHDNWVRLLELTAIGLFWWHPVVWWARREIGRAEEYCCDSWVV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig80565.18867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A538RXH7_9BACT5.250e-4336.49Peptidase_M56 domain-containing protein (Fragment)... [more]
A0A7V3G052_9BACT4.350e-4235.99Peptidase_M56 domain-containing protein (Fragment)... [more]
A0A517ZHC9_9PLAN3.360e-4136.90Protease HtpX n=1 Tax=Symmachiella dynata TaxID=25... [more]
A0A5C1AS49_9BACT3.770e-4138.58WD40 repeat domain-containing protein n=1 Tax=Limn... [more]
A0A354GY82_9BACT1.450e-4035.89Peptidase_M56 domain-containing protein n=1 Tax=Pl... [more]
UPI00118A494B8.200e-4036.16M56 family metallopeptidase n=1 Tax=Symmachiella d... [more]
A0A2E8D2S0_9PLAN2.200e-3935.69Peptidase_M56 domain-containing protein n=1 Tax=Pl... [more]
A0A517WXM8_9PLAN3.250e-3933.23Regulatory protein BlaR1 n=1 Tax=Gimesia aquarii T... [more]
A0A517W0G4_9PLAN3.080e-3731.29Regulatory protein BlaR1 n=1 Tax=Gimesia aquarii T... [more]
A0A1N6DHH8_9BACT1.480e-3634.66Signal transducer regulating beta-lactamase produc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig80565contigM-pyrifera_M_contig80565:147..941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.0
Seed ortholog evalue2.6e-29
Seed eggNOG ortholog344747.PM8797T_31173
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Antirepressor regulating drug resistance
EggNOG OGs2IZRJ@203682,COG4219@1,COG4219@2
COG Functional cat.KT
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size795
Cds size795
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816711.1425598-CDS-M-pyrifera_M_contig80565:146..9411622816711.1425598-CDS-M-pyrifera_M_contig80565:146..941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80565 147..941 +
1692278134.3881922-CDS-M-pyrifera_M_contig80565:146..9411692278134.3881922-CDS-M-pyrifera_M_contig80565:146..941Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig80565 147..941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig80565.18867.1prot_M-pyrifera_M_contig80565.18867.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig80565 147..941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig80565.18867.1

>prot_M-pyrifera_M_contig80565.18867.1 ID=prot_M-pyrifera_M_contig80565.18867.1|Name=mRNA_M-pyrifera_M_contig80565.18867.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=265bp
MSHLIDIAIANAITAGILAVVVLLATKIYTNPRFARVLWLLVLVKLVTPP
LWTLPLQPALSPLYSSTALGEPASPAEAQASQQDHPTRLPAASGKPGRST
TQPPPTIPSWVQPIPWRMVVAAAWGLGSIAWLLVAVYRIARFQQTLRVTD
EIDESTREICLSVATAMGLRALPRMGVSNADVGPMVWPIGTRPTVLLPQT
LLQTSSAHELQLLISHEYAHLKRRDHWVRWFELFVCSLYWWHPAYWIARR
RSRQAEEYCCDALVL
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mRNA from alignment at M-pyrifera_M_contig80565:147..941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig80565.18867.1 ID=mRNA_M-pyrifera_M_contig80565.18867.1|Name=mRNA_M-pyrifera_M_contig80565.18867.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig80565:147..941+ (Macrocystis pyrifera P11B4 male)
ATGTCACACCTCATCGACATTGCGATAGCAAACGCCATTACGGCTGGCAT TCTGGCCGTGGTCGTGTTGCTCGCAACCAAGATCTACACGAACCCGCGGT TTGCAAGAGTACTTTGGTTGCTGGTGCTAGTGAAGCTCGTAACCCCACCC CTCTGGACATTGCCCTTACAGCCTGCACTCTCGCCGCTCTATTCATCGAC CGCACTAGGAGAACCTGCATCGCCTGCTGAAGCACAAGCTTCTCAACAAG ACCATCCAACACGGCTACCCGCAGCGAGTGGCAAGCCCGGACGTTCTACT ACGCAACCCCCGCCAACCATCCCTTCGTGGGTGCAACCCATTCCATGGAG AATGGTCGTGGCGGCAGCTTGGGGGCTGGGTTCGATCGCCTGGTTGTTGG TCGCCGTGTATCGAATCGCTCGGTTTCAGCAGACACTTCGCGTCACAGAT GAAATCGACGAAAGCACACGAGAAATCTGCCTCTCGGTCGCGACTGCGAT GGGTTTGCGAGCGTTGCCCCGCATGGGGGTTTCGAATGCCGACGTCGGCC CCATGGTGTGGCCGATCGGCACCAGACCAACGGTGCTTCTGCCTCAGACG CTTCTACAAACTTCCTCGGCTCACGAGCTCCAACTGTTAATCTCGCACGA ATACGCTCATCTAAAGCGACGAGACCACTGGGTGCGTTGGTTTGAATTGT TCGTTTGCAGCCTCTATTGGTGGCATCCTGCTTATTGGATCGCCCGCAGG CGATCGCGGCAGGCAGAAGAATACTGCTGCGACGCGTTGGTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig80565:147..941+

>mRNA_M-pyrifera_M_contig80565.18867.1 ID=mRNA_M-pyrifera_M_contig80565.18867.1|Name=mRNA_M-pyrifera_M_contig80565.18867.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1590bp|location=Sequence derived from alignment at M-pyrifera_M_contig80565:147..941+ (Macrocystis pyrifera P11B4 male)
ATGTCACACCTCATCGACATTGCGATAGCAAACGCCATTACGGCTGGCAT
TCTGGCCGTGGTCGTGTTGCTCGCAACCAAGATCTACACGAACCCGCGGT
TTGCAAGAGTACTTTGGTTGCTGGTGCTAGTGAAGCTCGTAACCCCACCC
CTCTGGACATTGCCCTTACAGCCTGCACTCTCGCCGCTCTATTCATCGAC
CGCACTAGGAGAACCTGCATCGCCTGCTGAAGCACAAGCTTCTCAACAAG
ACCATCCAACACGGCTACCCGCAGCGAGTGGCAAGCCCGGACGTTCTACT
ACGCAACCCCCGCCAACCATCCCTTCGTGGGTGCAACCCATTCCATGGAG
AATGGTCGTGGCGGCAGCTTGGGGGCTGGGTTCGATCGCCTGGTTGTTGG
TCGCCGTGTATCGAATCGCTCGGTTTCAGCAGACACTTCGCGTCACAGAT
GAAATCGACGAAAGCACACGAGAAATCTGCCTCTCGGTCGCGACTGCGAT
GGGTTTGCGAGCGTTGCCCCGCATGGGGGTTTCGAATGCCGACGTCGGCC
CCATGGTGTGGCCGATCGGCACCAGACCAACGGTGCTTCTGCCTCAGACG
CTTCTACAAACTTCCTCGGCTCACGAGCTCCAACTGTTAATCTCGCACGA
ATACGCTCATCTAAAGCGACGAGACCACTGGGTGCGTTGGTTTGAATTGT
TCGTTTGCAGCCTCTATTGGTGGCATCCTGCTTATTGGATCGCCCGCAGG
CGATCGCGGCAGGCAGAAGAATACTGCTGCGACGCGTTGGTGCTGATGTC
ACACCTCATCGACATTGCGATAGCAAACGCCATTACGGCTGGCATTCTGG
CCGTGGTCGTGTTGCTCGCAACCAAGATCTACACGAACCCGCGGTTTGCA
AGAGTACTTTGGTTGCTGGTGCTAGTGAAGCTCGTAACCCCACCCCTCTG
GACATTGCCCTTACAGCCTGCACTCTCGCCGCTCTATTCATCGACCGCAC
TAGGAGAACCTGCATCGCCTGCTGAAGCACAAGCTTCTCAACAAGACCAT
CCAACACGGCTACCCGCAGCGAGTGGCAAGCCCGGACGTTCTACTACGCA
ACCCCCGCCAACCATCCCTTCGTGGGTGCAACCCATTCCATGGAGAATGG
TCGTGGCGGCAGCTTGGGGGCTGGGTTCGATCGCCTGGTTGTTGGTCGCC
GTGTATCGAATCGCTCGGTTTCAGCAGACACTTCGCGTCACAGATGAAAT
CGACGAAAGCACACGAGAAATCTGCCTCTCGGTCGCGACTGCGATGGGTT
TGCGAGCGTTGCCCCGCATGGGGGTTTCGAATGCCGACGTCGGCCCCATG
GTGTGGCCGATCGGCACCAGACCAACGGTGCTTCTGCCTCAGACGCTTCT
ACAAACTTCCTCGGCTCACGAGCTCCAACTGTTAATCTCGCACGAATACG
CTCATCTAAAGCGACGAGACCACTGGGTGCGTTGGTTTGAATTGTTCGTT
TGCAGCCTCTATTGGTGGCATCCTGCTTATTGGATCGCCCGCAGGCGATC
GCGGCAGGCAGAAGAATACTGCTGCGACGCGTTGGTGCTG
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