mRNA_M-pyrifera_M_contig79972.18754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79972.18754.1
Unique NamemRNA_M-pyrifera_M_contig79972.18754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Match: A0A2D5WA56_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5WA56_9BACT)

HSP 1 Score: 201 bits (512), Expect = 5.820e-57
Identity = 119/313 (38.02%), Postives = 173/313 (55.27%), Query Frame = 1
Query:    1 LRGLAASADGARIALALGDRVAVWSAAGDELASFAQPQSNEAFALSADGRVLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGFWNSQTADAIRFCLWDRVAGTKLHDVTQTGVFGGFQNFPEALALTPDGQRMLAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAVKSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLFVFGQALTPPVTHPAFDGLLAIDPATPYTHYLRVADGTGRADLFGSVPPGPAFVGLALETQVVF 939
            L GL  SADG R+ALA G  + ++  AG  L   A   +  A +LS DGR +  G  G++++     + +      F     + TRA LS DG  +A+G+WN  T   +RF +WD V   + H++ Q G  GG QN PEA+ ++P GQR+  G+WG+G   P+++LLDRDQ +PV+     GS+ ++ LD +GT+L  A K  HAN FSTTG ++ + TGER LQ+I  V  G    L +R+P +L + F+ G   T P+      G L ++ A+ +    R  D  GRADL  ++   PA VG     Q  F
Sbjct:  204 LDGLRVSADGKRVALAAGLALYIFDGAGTLLHQEALSAATRALSLSGDGRTVLVGGFGQLSILREENATWQFVQHLFAPPTEIATRADLSDDGGTIAIGWWNYATGTDLRFEVWDGVTFQRTHEIIQIGTPGGLQNLPEAVVVSPSGQRIACGSWGNGSSDPEVILLDRDQPQPVMEIDLNGSLRSLDLDESGTRLLVAAKDTHANNFSTTGGLRLFDTGERSLQVIEPVEVGGSLHLAAREPTALFAFFLLGDRATTPIQIAGVGGTLLLERASLFLITPRATDINGRADLSYTLGNDPALVGTQFAAQAAF 516          
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Match: A0A2E5X3E3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X3E3_9BACT)

HSP 1 Score: 197 bits (501), Expect = 2.460e-55
Identity = 115/313 (36.74%), Postives = 170/313 (54.31%), Query Frame = 1
Query:    1 LRGLAASADGARIALALGDRVAVWSAAGDELASFAQPQSNEAFALSADGRVLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGFWNSQTADAIRFCLWDRVAGTKLHDVTQTGVFGGFQNFPEALALTPDGQRMLAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAVKSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLFVFGQALTPPVTHPAFDGLLAIDPATPYTHYLRVADGTGRADLFGSVPPGPAFVGLALETQVVF 939
            L GL  S DG R+ALA G  + ++  AG  L   A   +  A +LS DG  +  G  G++++     + +      F     + TRA LS DG+ +A+G+WN  T   +RF +WD  +  + H++ Q G  GG QN PE++ ++P GQR+  G+WG+G   P+++LLDRDQ + VL    PGS+ ++ LD +GT+L  A K  HAN FSTTG ++ Y TGER LQ++  V  G    L +R P +L + F+ G+    PV      G L ++  + +    R  D TGRADL   +   P+ VG     Q  F
Sbjct:  206 LDGLKVSTDGKRVALAAGLALYIFDGAGTLLHQEALSAATRAMSLSGDGSTVLIGGFGQLSILRDGNAGWQFVQHLFAPPTEIATRADLSEDGSTIAIGWWNYATGTDLRFEVWDGTSFQRTHEIIQIGAPGGLQNLPESVVVSPSGQRIALGSWGNGSSDPEVILLDRDQPQSVLEIDLPGSLRSLDLDESGTRLLVASKDTHANNFSTTGSLRLYDTGERSLQVVEPVEVGGNLHLAARNPAALFAFFILGERAATPVQIAGVGGTLLLERTSLFLITPRATDATGRADLIYGLASDPSLVGSQFAAQAAF 518          
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Match: A0A7C2B2G1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B2G1_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.770e-43
Identity = 123/311 (39.55%), Postives = 164/311 (52.73%), Query Frame = 1
Query:   28 GARIALALGDRVAVWSAAGDELASFAQPQSNEAFALSADGRVLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGFWNSQTADAIRFCLWDRVAGTKLHDVTQTGV-FGGFQNFPEALALTPDGQRMLAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAVKSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLFVFGQALTPPVTHPAFDGLLAIDPATPYTHYLR-VADGTGRADLFGSVPPGPAFVGLALETQVVFLGPLG 954
            GAR A A G    VW A+G  L +     +  A ++S DG  +A G    + ++E  G+ F P  +       +  RA LSADG  LAV +WN +    +R  + D  +G  L    Q+G    G QNFP ALA+TPDG R+  G WG+G   P+++LL+R  A  VL+   PGSV A+AL   GT+L  A +  HAN FSTTG ++ + TGERDLQL+G+   G    L  + P+   +LF  G  L+ P   P   G + ID     TH LR VA  T RA L  +VP  PA VG     Q + L P G
Sbjct:  214 GARTAAAAGSYQYVWDASGGVLFARQDASAPSAMSISGDGARIAFGTRTGIEVWEDLGAGFGPLTARTAAPDEVAIRAELSADGGTLAVLWWNVRNGLDVRVEILDAGSGALLGAALQSGAGVVGLQNFPAALAITPDGSRVAVGLWGTGDGRPEVLLLERAGAGVVLAEDLPGSVEALALSGDGTRLAVARRDNHANVFSTTGTLEFFDTGERDLQLLGASRPGGSLDLAFQLPEPGDALFAIGTELSAPNLLPL--GPIWID--FNRTHVLRSVAGPTQRAVLGIAVPLDPALVGARFAAQALALVPAG 520          
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Match: A0A2D5AV93_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AV93_9BACT)

HSP 1 Score: 151 bits (382), Expect = 2.900e-38
Identity = 110/319 (34.48%), Postives = 151/319 (47.34%), Query Frame = 1
Query:    1 LRGLAASADGARIALALGDRVAVWSAAGDELASFAQPQSNEAFALSADGRVLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGFWNSQTADAIRFCLWDRVAGTKLHDVTQTGVFGGFQNFPEALALTPDGQRMLAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAVKSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLFVFGQALTPPVTHPA-FDGLLAIDPATPYTHYLRVADGTGRADLFGSVPPGPAFVGLALETQVVFLGPLG 954
            LR L  SADG RIALA G  + V       L     P S  A A S DGR LA G    V + E +G+ F    +       + T   LS DGA LA+G+WN+         +      T+L+ V QTG   G QNFP  L +TPDG+R+L G WGSG    +++L++R Q   +LS   PGS   + L   G +  +A K  HAN F+T+G +Q + TGERDL ++     G       +  +   +  + G A   P+  P  F+G+  +DPA      + V  G  +      VP G   +GL L  Q     P G
Sbjct:  191 LRRLLLSADGKRIALAAGSTLWVLDDDDTVLLEVELPTSTAAVAFSRDGRTLAYGMGRSVLVREDAGTGFGAPSTIDGRIDDIATEVRLSDDGATLAIGWWNTFVQSEAELEVVSLPTNTRLNSVRQTGGTPGLQNFPVTLDMTPDGRRILFGLWGSGDSSSEILLVERGQPGSILSVDLPGSPYDLVLGPAGNRFISASKDLHANLFATSGVLQLFETGERDLVMMDIPKPGHALRFLVQLSEPAMTWVLVGFAGANPLEFPRLFEGVFQLDPARTILPLITVPIGANQVQASVQVPDGSIMIGLELAAQAWITTPTG 509          
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Match: A0A518BNV5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BNV5_9BACT)

HSP 1 Score: 133 bits (334), Expect = 1.850e-31
Identity = 96/278 (34.53%), Postives = 134/278 (48.20%), Query Frame = 1
Query:  130 ALSADGR--VLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGFWNSQTADAIRFCLWD-RVAGTKLHDVTQTGVFGGFQNFPEALALTPDGQRMLAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAVKSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLFVFGQALTPPVTHPAFDGLLAIDPATPYTHYLRVADGTGRADLFGSVPPGPAFVGLALETQVVFLGPLG 954
            ALS DG   V+  G   EV +    G  + P  +   GA   P    LSADG  LA+G+W+  T   +R   WD  V  T+++ + Q G   G QNF     +T DG+R   G WG G   P+++L DRDQA+PVL+    GSV A+ L A GT+L AA K GHAN   + G V+   TGER L+L  +   G    +    P  + +  + G     P+  P   GL  +D + P+        G  R  +  S+ P  A + L L+   +  GP G
Sbjct:  241 ALSGDGNTVVVGTGAKLEVLVDARDGKGYLPTATITGGAADYPVAVDLSADGGFLALGWWDGLTGRTVRLETWDLAVTPTRINYLAQVGPPFGPQNFVSEARVTADGRRAAFGLWGLGFGEPEVVLFDRDQAQPVLAESLAGSVYAIDLSADGTRLAAARKQGHANVLGSLGAVELLDTGERALELTSTAIGGGATEVWLAAPSGVDAALLIGTQAVRPLPVPGVLGLSQLDLSKPWALVPAQPAGPDRFVVPLSIAPAAAGLELVLQGLALTTGPSG 518          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79972.18754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2D5WA56_9BACT5.820e-5738.02Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E5X3E3_9BACT2.460e-5536.74Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C2B2G1_9BACT1.770e-4339.55Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5AV93_9BACT2.900e-3834.48Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BNV5_9BACT1.850e-3134.53Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79972contigM-pyrifera_M_contig79972:2..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size954
Cds size954
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816703.3317456-CDS-M-pyrifera_M_contig79972:1..9551622816703.3317456-CDS-M-pyrifera_M_contig79972:1..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79972 2..955 +
1692278129.2860985-CDS-M-pyrifera_M_contig79972:1..9551692278129.2860985-CDS-M-pyrifera_M_contig79972:1..955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79972 2..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79972.18754.1prot_M-pyrifera_M_contig79972.18754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79972 2..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79972.18754.1

>prot_M-pyrifera_M_contig79972.18754.1 ID=prot_M-pyrifera_M_contig79972.18754.1|Name=mRNA_M-pyrifera_M_contig79972.18754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=318bp
LRGLAASADGARIALALGDRVAVWSAAGDELASFAQPQSNEAFALSADGR
VLAAGRMGEVALYEASGSAFAPAGSAFVGAPWLPTRAALSADGAVLAVGF
WNSQTADAIRFCLWDRVAGTKLHDVTQTGVFGGFQNFPEALALTPDGQRM
LAGAWGSGGPHPQLMLLDRDQAEPVLSTYTPGSVLAVALDATGTQLTAAV
KSGHANQFSTTGFVQRYATGERDLQLIGSVTAGQPFLLTSRQPQSLASLF
VFGQALTPPVTHPAFDGLLAIDPATPYTHYLRVADGTGRADLFGSVPPGP
AFVGLALETQVVFLGPLG
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mRNA from alignment at M-pyrifera_M_contig79972:2..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79972.18754.1 ID=mRNA_M-pyrifera_M_contig79972.18754.1|Name=mRNA_M-pyrifera_M_contig79972.18754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig79972:2..955+ (Macrocystis pyrifera P11B4 male)
CTGCGCGGGCTCGCGGCCAGCGCGGACGGCGCGCGCATCGCGCTCGCGCT CGGCGACCGGGTCGCGGTCTGGAGCGCGGCCGGCGACGAGCTCGCGTCCT TCGCCCAGCCCCAGAGCAACGAGGCCTTTGCGCTGTCCGCCGACGGGCGC GTGCTCGCCGCGGGCCGCATGGGCGAGGTCGCGTTGTACGAAGCGTCGGG CAGCGCCTTCGCGCCGGCCGGCAGCGCCTTCGTCGGCGCACCCTGGCTGC CGACGCGCGCCGCGCTCTCCGCGGACGGCGCGGTCCTGGCGGTCGGCTTC TGGAACTCCCAGACCGCGGACGCGATCCGCTTCTGCCTGTGGGACCGCGT CGCGGGCACCAAGCTGCACGACGTGACCCAGACTGGCGTCTTCGGCGGCT TCCAGAACTTCCCCGAAGCGCTCGCGCTGACTCCCGACGGCCAGCGCATG CTCGCGGGCGCGTGGGGCAGCGGCGGCCCGCACCCGCAGCTGATGCTGCT CGACCGCGACCAGGCCGAGCCGGTGCTCAGCACCTACACGCCCGGCAGCG TGCTCGCCGTCGCGCTCGACGCGACCGGCACGCAGCTCACCGCGGCCGTG AAGTCGGGCCACGCCAACCAGTTCTCGACGACGGGCTTCGTGCAGCGCTA CGCCACCGGCGAGCGCGACCTGCAGCTGATCGGCTCGGTCACCGCGGGGC AGCCCTTCCTGTTGACCTCGCGCCAGCCCCAGAGCCTCGCCAGCCTGTTC GTGTTCGGTCAGGCGCTGACCCCCCCGGTCACGCATCCGGCCTTCGACGG GCTGCTCGCCATCGACCCCGCCACGCCGTACACGCACTACCTGCGCGTCG CCGATGGGACGGGCCGCGCCGACCTGTTCGGCAGCGTGCCCCCCGGCCCG GCCTTCGTCGGGCTCGCGCTCGAGACGCAGGTCGTGTTCCTCGGGCCCCT CGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79972:2..955+

>mRNA_M-pyrifera_M_contig79972.18754.1 ID=mRNA_M-pyrifera_M_contig79972.18754.1|Name=mRNA_M-pyrifera_M_contig79972.18754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1908bp|location=Sequence derived from alignment at M-pyrifera_M_contig79972:2..955+ (Macrocystis pyrifera P11B4 male)
CTGCGCGGGCTCGCGGCCAGCGCGGACGGCGCGCGCATCGCGCTCGCGCT
CGGCGACCGGGTCGCGGTCTGGAGCGCGGCCGGCGACGAGCTCGCGTCCT
TCGCCCAGCCCCAGAGCAACGAGGCCTTTGCGCTGTCCGCCGACGGGCGC
GTGCTCGCCGCGGGCCGCATGGGCGAGGTCGCGTTGTACGAAGCGTCGGG
CAGCGCCTTCGCGCCGGCCGGCAGCGCCTTCGTCGGCGCACCCTGGCTGC
CGACGCGCGCCGCGCTCTCCGCGGACGGCGCGGTCCTGGCGGTCGGCTTC
TGGAACTCCCAGACCGCGGACGCGATCCGCTTCTGCCTGTGGGACCGCGT
CGCGGGCACCAAGCTGCACGACGTGACCCAGACTGGCGTCTTCGGCGGCT
TCCAGAACTTCCCCGAAGCGCTCGCGCTGACTCCCGACGGCCAGCGCATG
CTCGCGGGCGCGTGGGGCAGCGGCGGCCCGCACCCGCAGCTGATGCTGCT
CGACCGCGACCAGGCCGAGCCGGTGCTCAGCACCTACACGCCCGGCAGCG
TGCTCGCCGTCGCGCTCGACGCGACCGGCACGCAGCTCACCGCGGCCGTG
AAGTCGGGCCACGCCAACCAGTTCTCGACGACGGGCTTCGTGCAGCGCTA
CGCCACCGGCGAGCGCGACCTGCAGCTGATCGGCTCGGTCACCGCGGGGC
AGCCCTTCCTGTTGACCTCGCGCCAGCCCCAGAGCCTCGCCAGCCTGTTC
GTGTTCGGTCAGGCGCTGACCCCCCCGGTCACGCATCCGGCCTTCGACGG
GCTGCTCGCCATCGACCCCGCCACGCCGTACACGCACTACCTGCGCGTCG
CCGATGGGACGGGCCGCGCCGACCTGTTCGGCAGCGTGCCCCCCGGCCCG
GCCTTCGTCGGGCTCGCGCTCGAGACGCAGGTCGTGTTCCTCGGGCCCCT
CGGCCTGCGCGGGCTCGCGGCCAGCGCGGACGGCGCGCGCATCGCGCTCG
CGCTCGGCGACCGGGTCGCGGTCTGGAGCGCGGCCGGCGACGAGCTCGCG
TCCTTCGCCCAGCCCCAGAGCAACGAGGCCTTTGCGCTGTCCGCCGACGG
GCGCGTGCTCGCCGCGGGCCGCATGGGCGAGGTCGCGTTGTACGAAGCGT
CGGGCAGCGCCTTCGCGCCGGCCGGCAGCGCCTTCGTCGGCGCACCCTGG
CTGCCGACGCGCGCCGCGCTCTCCGCGGACGGCGCGGTCCTGGCGGTCGG
CTTCTGGAACTCCCAGACCGCGGACGCGATCCGCTTCTGCCTGTGGGACC
GCGTCGCGGGCACCAAGCTGCACGACGTGACCCAGACTGGCGTCTTCGGC
GGCTTCCAGAACTTCCCCGAAGCGCTCGCGCTGACTCCCGACGGCCAGCG
CATGCTCGCGGGCGCGTGGGGCAGCGGCGGCCCGCACCCGCAGCTGATGC
TGCTCGACCGCGACCAGGCCGAGCCGGTGCTCAGCACCTACACGCCCGGC
AGCGTGCTCGCCGTCGCGCTCGACGCGACCGGCACGCAGCTCACCGCGGC
CGTGAAGTCGGGCCACGCCAACCAGTTCTCGACGACGGGCTTCGTGCAGC
GCTACGCCACCGGCGAGCGCGACCTGCAGCTGATCGGCTCGGTCACCGCG
GGGCAGCCCTTCCTGTTGACCTCGCGCCAGCCCCAGAGCCTCGCCAGCCT
GTTCGTGTTCGGTCAGGCGCTGACCCCCCCGGTCACGCATCCGGCCTTCG
ACGGGCTGCTCGCCATCGACCCCGCCACGCCGTACACGCACTACCTGCGC
GTCGCCGATGGGACGGGCCGCGCCGACCTGTTCGGCAGCGTGCCCCCCGG
CCCGGCCTTCGTCGGGCTCGCGCTCGAGACGCAGGTCGTGTTCCTCGGGC
CCCTCGGC
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