prot_M-pyrifera_M_contig79821.18728.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig79821.18728.1
Unique Nameprot_M-pyrifera_M_contig79821.18728.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length103
Homology
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BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Match: UPI000C78E68F (zinc finger X-chromosomal protein-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78E68F)

HSP 1 Score: 69.3 bits (168), Expect = 1.370e-11
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 0 
Query:    1 RCGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVRKH-GRKVSVGCNFCGRQVSVLSWRQHLGECHR 81
            +C  C   F  K  L  H+R VH   +  +C  C+Y++   +NLR H  R H GRKVS+ C FC + V  L W  HL + H+
Sbjct:  392 QCDHCEKSFSLKDGLNRHIRAVHFKLKDKSCQHCNYRSAESFNLRMHIARVHEGRKVSLPCPFCNKNVVSLQW--HLEQYHK 471
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BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Match: UPI001F4F1D69 (protein bric-a-brac 1-like isoform X1 n=5 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F1D69)

HSP 1 Score: 55.8 bits (133), Expect = 7.130e-7
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0 
Query:    2 CGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVRKHGRKVS 57
            C  C   FG +G+L +H+R+VH +  PH C  C  K K   +LR+H  R+H + ++
Sbjct:  326 CPYCHRQFGYRGNLTIHIRDVHSHQGPHICPHCGKKMKNKSSLRTHLYRQHNKDLT 381
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79821.18728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000C78E68F1.370e-1139.02zinc finger X-chromosomal protein-like n=1 Tax=Eur... [more]
UPI001F4F1D697.130e-737.50protein bric-a-brac 1-like isoform X1 n=5 Tax=Schi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 1..23
e-value: 16.0
score: 11.5
coord: 58..80
e-value: 78.0
score: 5.4
coord: 29..52
e-value: 0.79
score: 18.8
coord: 85..103
e-value: 200.0
score: 1.7
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 87..103
e-value: 0.0013
score: 19.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 2..23
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..28
score: 12.508
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 85..103
score: 9.515
NoneNo IPR availableGENE3D3.30.160.60coord: 63..103
e-value: 4.3E-5
score: 25.6
NoneNo IPR availableGENE3D3.30.160.60coord: 1..62
e-value: 1.6E-10
score: 43.0
NoneNo IPR availablePANTHERPTHR24406FAMILY NOT NAMEDcoord: 1..103
NoneNo IPR availablePANTHERPTHR24406:SF11GDNF INDUCIBLE ZINC FINGER PROTEIN 1coord: 1..103
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 2..48
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 60..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79821contigM-pyrifera_M_contig79821:6..314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79821.18728.1mRNA_M-pyrifera_M_contig79821.18728.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig79821 6..314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig79821.18728.1 ID=prot_M-pyrifera_M_contig79821.18728.1|Name=mRNA_M-pyrifera_M_contig79821.18728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
RCGECGGLFGRKGDLLVHLRNVHLNHRPHACMECDYKAKTGWNLRSHFVR
KHGRKVSVGCNFCGRQVSVLSWRQHLGECHRSVPLCCGVCGKSFKSSNGL
QRH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf