mRNA_M-pyrifera_M_contig79699.18700.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79699.18700.1
Unique NamemRNA_M-pyrifera_M_contig79699.18700.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79699.18700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79699contigM-pyrifera_M_contig79699:412..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816700.4705296-CDS-M-pyrifera_M_contig79699:411..5111622816700.4705296-CDS-M-pyrifera_M_contig79699:411..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79699 412..511 +
1692278127.598284-CDS-M-pyrifera_M_contig79699:411..5111692278127.598284-CDS-M-pyrifera_M_contig79699:411..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79699 412..511 +
1622816700.4838223-CDS-M-pyrifera_M_contig79699:706..8821622816700.4838223-CDS-M-pyrifera_M_contig79699:706..882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79699 707..882 +
1692278127.6108804-CDS-M-pyrifera_M_contig79699:706..8821692278127.6108804-CDS-M-pyrifera_M_contig79699:706..882Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79699 707..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79699.18700.1prot_M-pyrifera_M_contig79699.18700.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79699 412..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79699.18700.1

>prot_M-pyrifera_M_contig79699.18700.1 ID=prot_M-pyrifera_M_contig79699.18700.1|Name=mRNA_M-pyrifera_M_contig79699.18700.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MSKSSGGGAYISNEVVFENSTFSNNHAQGFWANGGQGGGVAITVAQENPV
HLTNVTVERNVAGFGGGVLLASLPDVIDLSIAAHDNVAASGG
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mRNA from alignment at M-pyrifera_M_contig79699:412..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79699.18700.1 ID=mRNA_M-pyrifera_M_contig79699.18700.1|Name=mRNA_M-pyrifera_M_contig79699.18700.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig79699:412..882+ (Macrocystis pyrifera P11B4 male)
ATGTCGAAATCATCTGGAGGCGGTGCGTACATTTCCAACGAGGTCGTATT
TGAGAACAGTACCTTCTCTAACAACCATGCCCAAGGTTTCTGGGCGAACG
GTGGAGGGCTGGTGGTCTTCAACGACGCAATCCTCTAGCAGACATCGTTC
ATTGGCAACACTGTGACTTTCTGGGGCATAGGTCTTGGGGGAGGGCTACT
GGTGGGAGGTGGTAATGTCGACCTGCGAGATGTTGCAGTTTTGGGCAACG
CCGTGCTGCAGAAGCGCTCCCCATTGGCGCCTTCGAGCTCTCCAGGTGGC
CAAGGTGGCGGTGTCGCTATAACAGTTGCTCAAGAGAACCCGGTGCACCT
CACAAACGTCACTGTGGAGCGCAATGTTGCTGGGTTTGGAGGGGGAGTGC
TGCTGGCGTCGCTGCCGGATGTGATCGATTTGAGCATTGCAGCCCACGAC
AACGTTGCTGCCAGTGGCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79699:412..882+

>mRNA_M-pyrifera_M_contig79699.18700.1 ID=mRNA_M-pyrifera_M_contig79699.18700.1|Name=mRNA_M-pyrifera_M_contig79699.18700.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig79699:412..882+ (Macrocystis pyrifera P11B4 male)
ATGTCGAAATCATCTGGAGGCGGTGCGTACATTTCCAACGAGGTCGTATT
TGAGAACAGTACCTTCTCTAACAACCATGCCCAAGGTTTCTGGGCGAACG
ATGTCGAAATCATCTGGAGGCGGTGCGTACATTTCCAACGAGGTCGTATT
TGAGAACAGTACCTTCTCTAACAACCATGCCCAAGGTTTCTGGGCGAACG
GTGGCCAAGGTGGCGGTGTCGCTATAACAGTTGCTCAAGAGAACCCGGTG
CACCTCACAAACGTCACTGTGGAGCGCAATGTTGCTGGGTTTGGAGGGGG
AGTGCTGCTGGCGTCGCTGCCGGATGTGATCGATTTGAGCATTGCAGCCC
ACGACAACGTTGCTGCCAGTGGCGGTGTGGCCAAGGTGGCGGTGTCGCTA
TAACAGTTGCTCAAGAGAACCCGGTGCACCTCACAAACGTCACTGTGGAG
CGCAATGTTGCTGGGTTTGGAGGGGGAGTGCTGCTGGCGTCGCTGCCGGA
TGTGATCGATTTGAGCATTGCAGCCCACGACAACGTTGCTGCCAGTGGCG
GT
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