mRNA_M-pyrifera_M_contig7909.18575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7909.18575.1
Unique NamemRNA_M-pyrifera_M_contig7909.18575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: D8LTI0_ECTSI (DUF1736 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI0_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.830e-13
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYR 123
            N DVW  S W D+WRHDFWGQ++A AESHKSFRPLTT+T++
Sbjct:   57 NQDVWAGSSWGDIWRHDFWGQQIAHAESHKSFRPLTTVTFK 97          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7R9HYY6_9NEOP (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9HYY6_9NEOP)

HSP 1 Score: 72.8 bits (177), Expect = 1.350e-12
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLI 324
            N DV  ++P SD+W HDFWG  +  + SH S+RPLTTL+++LN     AL AG            DL A   ++          GFH+ NV+LH AT A+ TW   L+
Sbjct:   35 NDDVLPETPLSDLWLHDFWGTPLRHSGSHGSYRPLTTLSFKLN-----ALWAGG-----------DLRAVPSSK----------GFHVVNVVLHSATTAAFTWWIGLL 116          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7R9FHE4_9NEOP (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9FHE4_9NEOP)

HSP 1 Score: 72.8 bits (177), Expect = 1.370e-12
Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLI 324
            N DV  ++P SD+W HDFWG  +  + SH S+RPLTTL+++LN     AL AG            DL A   ++          GFH+ NV+LH AT A+ TW   L+
Sbjct:   85 NDDVLPETPLSDLWLHDFWGTPLRHSGSHGSYRPLTTLSFKLN-----ALWAGG-----------DLRAVPSSK----------GFHVVNVVLHSATTAAFTWWIGLL 166          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7R9CFW2_TIMCR (Dolichyl-phosphate-mannose--protein mannosyltransferase n=2 Tax=Timema TaxID=61471 RepID=A0A7R9CFW2_TIMCR)

HSP 1 Score: 72.4 bits (176), Expect = 1.850e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLI 324
            N DV +++P S++W HDFWG  +  + SH S+RPLTTL+++LN     AL AG            DL A   ++          GFH+ NVILH AT A+ TW   L+
Sbjct:   35 NDDVLSETPLSELWFHDFWGTPLRHSGSHGSYRPLTTLSFKLN-----ALWAGG-----------DLRAVSSSK----------GFHVVNVILHSATTAAFTWWIGLL 116          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7R9P2W6_TIMCA ((California timema) hypothetical protein n=1 Tax=Timema californicum TaxID=61474 RepID=A0A7R9P2W6_TIMCA)

HSP 1 Score: 72.4 bits (176), Expect = 1.870e-12
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLI 324
            N DV  ++P S++W HDFWG  +  + SH S+RPLTTL+++LN     A+ AG            DL AA  ++          GFH+ NVILH AT A+ TW   L+
Sbjct:  160 NDDVLPETPLSELWLHDFWGTPLRHSGSHGSYRPLTTLSFKLN-----AVWAGG-----------DLRAASSSK----------GFHVVNVILHSATTAAFTWWIGLL 241          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7R9JXW1_TIMGE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=4 Tax=Timema TaxID=61471 RepID=A0A7R9JXW1_TIMGE)

HSP 1 Score: 70.5 bits (171), Expect = 9.040e-12
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLI 324
            N DV  ++P SD+W HDFWG  +  + SH S+RPLTTL+++LN     AL AG     G P                     + GFH+ NV+LH AT A+ TW   L+
Sbjct:   98 NDDVLPETPLSDLWLHDFWGTPLRHSGSHGSYRPLTTLSFKLN-----ALWAG-----GEPRT----------------VPSSKGFHVVNVVLHSATTAAFTWWIGLL 179          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A9UT00_MONBE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UT00_MONBE)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAG 159
            N DV  D+ WSD+W HDFWG  M  A SHKS+RPLT  T++LNN+LA    AG
Sbjct:   89 NPDVRLDTSWSDLWAHDFWGTPMTAARSHKSYRPLTVATFKLNNLLAGMAPAG 141          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A8J9Z1F4_BRALA (TMTC4 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z1F4_BRALA)

HSP 1 Score: 68.2 bits (165), Expect = 5.570e-11
Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLIFAGEK 339
            N D+ +++P  +++RHDFWG+ +A   SHKS+RPLT LT+RLN+  A  LS   S                              FH  N++LH A C     +F +IF G +
Sbjct:   88 NKDLLSETPVWELFRHDFWGKNLASKTSHKSYRPLTVLTFRLNHWFAGGLSQPWS------------------------------FHAVNLLLHAAICVQLLHVFSVIFGGVR 170          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: UPI000B4EBC00 (transmembrane and TPR repeat-containing protein 4 isoform X4 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4EBC00)

HSP 1 Score: 68.2 bits (165), Expect = 5.600e-11
Identity = 37/113 (32.74%), Postives = 54/113 (47.79%), Query Frame = 1
Query:    1 NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLIFAGEK 339
            N D+  D+P  D+W HDFWG +++   SHKS+RPLT LT+R+N     +LS G                               GFH+ N++LHGA       +F ++F G +
Sbjct:   52 NKDLRADTPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRIN----YSLSGG---------------------------FHPVGFHVVNILLHGAVSVLMLDVFSVLFGGLR 133          
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Match: A0A7S3P8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P8A2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.570e-11
Identity = 39/105 (37.14%), Postives = 51/105 (48.57%), Query Frame = 1
Query:   25 PWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQALSAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCASSTWLFRLIFAGEK 339
            PW+ ++  DFWG  M+D +SHKSFRP+TTL+++LN MLA+ L            E V                   GFH+ NVILHG   A  T     +F G  
Sbjct:   65 PWTQVFTRDFWGTPMSDVQSHKSFRPITTLSFKLNWMLAEKL------------ETVGTDDHTF------------GFHVVNVILHGIVTALVTEAAAFVFCGSS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7909.18575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTI0_ECTSI6.830e-1370.73DUF1736 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7R9HYY6_9NEOP1.350e-1239.81Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A7R9FHE4_9NEOP1.370e-1239.81Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A7R9CFW2_TIMCR1.850e-1239.81Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A7R9P2W6_TIMCA1.870e-1239.81(California timema) hypothetical protein n=1 Tax=T... [more]
A0A7R9JXW1_TIMGE9.040e-1238.89Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A9UT00_MONBE1.190e-1158.49Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A8J9Z1F4_BRALA5.570e-1133.63TMTC4 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
UPI000B4EBC005.600e-1132.74transmembrane and TPR repeat-containing protein 4 ... [more]
A0A7S3P8A2_9STRA7.570e-1137.14Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7909contigM-pyrifera_M_contig7909:10951..12233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D8LTI0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.057583-CDS-M-pyrifera_M_contig7909:10950..111761622816694.057583-CDS-M-pyrifera_M_contig7909:10950..11176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 10951..11176 -
1692278123.7465193-CDS-M-pyrifera_M_contig7909:10950..111761692278123.7465193-CDS-M-pyrifera_M_contig7909:10950..11176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 10951..11176 -
1622816694.0707924-CDS-M-pyrifera_M_contig7909:12111..122331622816694.0707924-CDS-M-pyrifera_M_contig7909:12111..12233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 12112..12233 -
1692278123.7586257-CDS-M-pyrifera_M_contig7909:12111..122331692278123.7586257-CDS-M-pyrifera_M_contig7909:12111..12233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 12112..12233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7909.18575.1prot_M-pyrifera_M_contig7909.18575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7909 10951..12233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7909.18575.1

>prot_M-pyrifera_M_contig7909.18575.1 ID=prot_M-pyrifera_M_contig7909.18575.1|Name=mRNA_M-pyrifera_M_contig7909.18575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
NHDVWTDSPWSDMWRHDFWGQKMADAESHKSFRPLTTLTYRLNNMLAQAL
SAGRSASDGNPEENVDLMAAEINRGAGPQYTDAPGFHLFNVILHGATCAS
STWLFRLIFAGEKLR*
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mRNA from alignment at M-pyrifera_M_contig7909:10951..12233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7909.18575.1 ID=mRNA_M-pyrifera_M_contig7909.18575.1|Name=mRNA_M-pyrifera_M_contig7909.18575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1283bp|location=Sequence derived from alignment at M-pyrifera_M_contig7909:10951..12233- (Macrocystis pyrifera P11B4 male)
AATCACGACGTCTGGACCGATTCGCCGTGGAGCGACATGTGGCGTCATGA TTTCTGGGGACAAAAAATGGCCGACGCGGAGAGCCACAAGAGCTTTCGAC CGCTCACCACCCTCACGTACAGGTATTTGTGTACTTACCCTCTTGGGTCT TGAGAGGGGGAAACTGACGATAAAAGTGGCAAATACAGCAACGGCTACGA CTGCACTGCGTCACTGGAGGGTGATACAAATTGGTGTCCGAGTTACGATG CAAGGAGTCGTACGGCACGGGCGCAACATGATCCTACCCATATGATATAC TGCTGGGCGCTTACCCTATTGTAGAGGATTGCCAACACGAAAACTATACC ACAGGCACCAAGTACTTTTTTTCGTCGCTATCTCGGCGTCTCAAAGGGGT TATTGCATACTGGTACCTGGTAGATACAATAGATGCACCGAGAATCTAAC AAGTACCGGCATATATTTCCCGTTGGTAGCACAGCTGTACATGGTAGCAT GTTAGGTAATTGTAGTCCAATTTGAAGTTTGTCATTTGTACACGAGGACC TCTGGTCAAGCACTTTCAGCAGCTCTCGCCACTCCGAAAACTCGTCAGTA TAATCGCGAACTACAGTACATGGGTACGCAACTGCAGCTGTAAGATAATC TCCTGGCTACTCTACATTCAAAGTGAAGGAACTTCCCACTACGGCGGCTG TGATGCTGTGGCAGCTATTAATAGTCTCTTTTCGGCGGTTGGTATCTACT GCAGTAATTAATCGTCTGGTCTCTTCACCAGGTAACGCGTCACTTTCTTC GCCAGAAACATGCACCAAACAAATAGATGTGTGCCGAATTGGTCGAGTAT GAGTCGTACAATCTACCAGTACCCATTATTATGTATCAGCTGCCTGATAC CAGGTCTCAAGCGTGTGCCCCACTACTGCAGGCAGAAATACGTAGTGACG GTAAATCCTTTTGGCGATCGAGGTCGCGAGACTTACCCCCGAACATGTAT GCCCTCTCACATGCGGTTCGTACCTCGTGCCGCGGACACTCTATGCCGTG CGATTAGGTTGAATAATATGCTCGCGCAAGCGCTTTCTGCGGGACGAAGT GCCTCTGACGGAAATCCAGAAGAAAACGTCGATCTGATGGCGGCGGAGAT CAATCGGGGAGCAGGCCCCCAGTACACCGACGCACCCGGGTTTCACCTGT TCAACGTCATTCTGCACGGGGCCACCTGCGCGTCCTCAACGTGGCTCTTT CGCCTCATTTTTGCAGGCGAGAAGTTACGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7909:10951..12233-

>mRNA_M-pyrifera_M_contig7909.18575.1 ID=mRNA_M-pyrifera_M_contig7909.18575.1|Name=mRNA_M-pyrifera_M_contig7909.18575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig7909:10951..12233- (Macrocystis pyrifera P11B4 male)
AATCACGACGTCTGGACCGATTCGCCGTGGAGCGACATGTGGCGTCATGA
TTTCTGGGGACAAAAAATGGCCGACGCGGAGAGCCACAAGAGCTTTCGAC
CGCTCACCACCCTCACGTACAGAATCACGACGTCTGGACCGATTCGCCGT
GGAGCGACATGTGGCGTCATGATTTCTGGGGACAAAAAATGGCCGACGCG
GAGAGCCACAAGAGCTTTCGACCGCTCACCACCCTCACGTACAGGTTGAA
TAATATGCTCGCGCAAGCGCTTTCTGCGGGACGAAGTGCCTCTGACGGAA
ATCCAGAAGAAAACGTCGATCTGATGGCGGCGGAGATCAATCGGGGAGCA
GGCCCCCAGTACACCGACGCACCCGGGTTTCACCTGTTCAACGTCATTCT
GCACGGGGCCACCTGCGCGTCCTCAACGTGGCTCTTTCGCCTCATTTTTG
CAGGCGAGAAGTTACGGTGAGTTGAATAATATGCTCGCGCAAGCGCTTTC
TGCGGGACGAAGTGCCTCTGACGGAAATCCAGAAGAAAACGTCGATCTGA
TGGCGGCGGAGATCAATCGGGGAGCAGGCCCCCAGTACACCGACGCACCC
GGGTTTCACCTGTTCAACGTCATTCTGCACGGGGCCACCTGCGCGTCCTC
AACGTGGCTCTTTCGCCTCATTTTTGCAGGCGAGAAGTTACGGTGA
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