mRNA_M-pyrifera_M_contig7909.18574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7909.18574.1
Unique NamemRNA_M-pyrifera_M_contig7909.18574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7909.18574.1 vs. uniprot
Match: D8LTI0_ECTSI (DUF1736 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI0_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.270e-25
Identity = 70/133 (52.63%), Postives = 84/133 (63.16%), Query Frame = 1 
Query:  967 SGPGTARFLVALGFACTATLCKEIGVTVFGLMAGADVVRFLDESNYCQSRAK---SAAGDEVSGEYMRGKGNAK-LREALRRRLCRFKPVPAAARVTAAGVCALALVLMHYSLHEGAEVREWGVLENDISILP 1353
            SGPG  R+  AL FA +ATLCKE+G+TVFGLMAG +VVRF +E  + Q + K         +S    RG    + LRE  R R     P  AAARV +A + A+ LV +H  LHEGA VREWGVLENDISILP
Sbjct:  135 SGPGVTRYCAALLFAASATLCKEVGITVFGLMAGGEVVRFFEEREWRQRKRKLWQRRRSGVISTARSRGIWRRQALREYWRCRFMMRVPAAAAARVVSATIFAVLLVYLHVRLHEGARVREWGVLENDISILP 267
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BLAST of mRNA_M-pyrifera_M_contig7909.18574.1 vs. uniprot
Match: A0A0B6ZG64_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZG64_9EUPU)

HSP 1 Score: 52.8 bits (125), Expect = 5.740e-5
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   25 SLLFAVHPVHVEAVAPIVGRADLLCGFFAVIALSLTVGGRSPSTTSNKPKGY 180
            SLLFAVHPVH E+VA IVGRA+LLC  F +++  L V G S + +  +PK +
Sbjct:   70 SLLFAVHPVHTESVAGIVGRAELLCALFFILSFLLYVKG-STTYSQFRPKNF 120
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BLAST of mRNA_M-pyrifera_M_contig7909.18574.1 vs. uniprot
Match: A0A1B6C9I9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C9I9_9HEMI)

HSP 1 Score: 55.1 bits (131), Expect = 6.930e-5
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   22 ASLLFAVHPVHVEAVAPIVGRADLLCGFFAVIALSLTVGG 141
            ASL+FAVHPVH EA+A IVGRADLLC FF+  AL L   G
Sbjct:  143 ASLIFAVHPVHTEAIAGIVGRADLLCTFFSFCALLLYAKG 182
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BLAST of mRNA_M-pyrifera_M_contig7909.18574.1 vs. uniprot
Match: A0A7S2RAX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAX3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.750e-5
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   28 LLFAVHPVHVEAVAPIVGRADLLCGFFAVIALSLTVGGRSPSTT 159
            LLFAVHP+H E VA +VGRADLLC FFA+ AL L +     S+T
Sbjct:  152 LLFAVHPIHTEPVASLVGRADLLCAFFALAALLLFLSAAQHSST 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7909.18574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTI0_ECTSI1.270e-2552.63DUF1736 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A0B6ZG64_9EUPU5.740e-553.85Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A1B6C9I9_9HEMI6.930e-570.00Uncharacterized protein (Fragment) n=1 Tax=Clastop... [more]
A0A7S2RAX3_9STRA7.750e-561.36Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7909contigM-pyrifera_M_contig7909:8120..10547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog2880.D8LTI0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1361
Cds size1359
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7909.18574.1prot_M-pyrifera_M_contig7909.18574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7909 8120..10547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.996594-CDS-M-pyrifera_M_contig7909:8119..83001622816693.996594-CDS-M-pyrifera_M_contig7909:8119..8300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 8120..8300 -
1692278123.7154121-CDS-M-pyrifera_M_contig7909:8119..83001692278123.7154121-CDS-M-pyrifera_M_contig7909:8119..8300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 8120..8300 -
1622816694.007603-CDS-M-pyrifera_M_contig7909:8839..99571622816694.007603-CDS-M-pyrifera_M_contig7909:8839..9957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 8840..9957 -
1692278123.727005-CDS-M-pyrifera_M_contig7909:8839..99571692278123.727005-CDS-M-pyrifera_M_contig7909:8839..9957Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 8840..9957 -
1622816694.0220816-CDS-M-pyrifera_M_contig7909:10487..105471622816694.0220816-CDS-M-pyrifera_M_contig7909:10487..10547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 10488..10547 -
1692278123.7352102-CDS-M-pyrifera_M_contig7909:10487..105471692278123.7352102-CDS-M-pyrifera_M_contig7909:10487..10547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7909 10488..10547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7909.18574.1

>prot_M-pyrifera_M_contig7909.18574.1 ID=prot_M-pyrifera_M_contig7909.18574.1|Name=mRNA_M-pyrifera_M_contig7909.18574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=453bp
DELPAVAASLLFAVHPVHVEAVAPIVGRADLLCGFFAVIALSLTVGGRSP
STTSNKPKGYARVEKLKTSSHNQHSKGSTRSSCSKRSKRGKRSKRGKRGE
QSGVAGAGKESSAKLGVVHDSARQGVAAARQDVAVPPVKVASTAISGITR
ANNVLVGRSGTSSTASVCSVNAARVADDRDQSPPRTAADAPAGSHGAHVS
KPEGKSQISTAGGDGKESPSTVNTPEGLSAALEPMSEVAPFAPSAPDESS
ALAAELNTSNTPSSTIALAALPGPNEMGVTVAVGGAAASATVTAAAMTPC
ISHNGLLVTEKLGLAGEDVASYSGPGTARFLVALGFACTATLCKEIGVTV
FGLMAGADVVRFLDESNYCQSRAKSAAGDEVSGEYMRGKGNAKLREALRR
RLCRFKPVPAAARVTAAGVCALALVLMHYSLHEGAEVREWGVLENDISIL
PR*
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mRNA from alignment at M-pyrifera_M_contig7909:8120..10547-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7909.18574.1 ID=mRNA_M-pyrifera_M_contig7909.18574.1|Name=mRNA_M-pyrifera_M_contig7909.18574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2428bp|location=Sequence derived from alignment at M-pyrifera_M_contig7909:8120..10547- (Macrocystis pyrifera P11B4 male)
GACGAATTACCGGCGGTCGCTGCGTCGCTGTTGTTTGCGGTTCACCCTGT
GCATGTTGAGGTGAAAAATTACACCTTAATGCCGTCTAACAACAACATAA
GATGTCTGCGACGAACAGGAAGTGGGCCAGTCAATGGTACCTCGGCCGAT
ATGGCAAGCGATTTAACTTAGTTCCTACAGAATGATGTTTTGACTCGACT
TGTGACAGTAATAATTGATACATGGTCGAACGCGTACAGCTGTGAGCGTA
GCGTTTAAAGCTGATGAGCTGAAGCAACAGCCTCTTGGTCCTTTTCTTCT
CCGAAAGGATGAACGTTGCTCTCTTGCGCCAGTCAGTATACCTACGTAAG
GTCGACTTTTTTCAGCTTATCATACGCAGGGTTCACGCAATTCACTCTGA
ATCAGACCGCCGACCAGGGAGGTTTCAGCAACGATATCTATCCAGAGGCG
AAACGAATCTACAGTACCCTCCCGTCTCATGCCTTCGATCTCGTCTGTTC
CCCACGTGGCATGACCATAAGGCTTTCAAAACGCTTCACTCTGGGTTTCC
TTTGCGTTGCCCTTCTTTTTCTTTACTCTCTACCTGGCAGGCTGTTGCCC
CCATTGTTGGCAGAGCCGATTTACTCTGCGGCTTTTTCGCAGTGATCGCC
CTTTCCCTCACGGTGGGAGGCCGATCCCCTTCCACGACGTCAAACAAGCC
CAAGGGTTACGCTCGCGTCGAAAAGCTGAAAACGAGTAGTCACAACCAGC
ACAGCAAGGGGAGCACGCGCAGCAGTTGTAGCAAACGAAGCAAGCGAGGC
AAGCGAAGCAAGCGAGGCAAGAGAGGCGAGCAGAGCGGCGTTGCGGGGGC
GGGGAAAGAGTCATCAGCAAAGCTCGGGGTCGTCCATGATTCTGCCCGTC
AAGGCGTTGCCGCGGCCCGCCAAGATGTCGCTGTTCCGCCAGTCAAAGTT
GCATCGACAGCGATCAGCGGTATCACAAGGGCCAACAATGTCTTGGTAGG
TAGATCTGGAACTAGTTCAACAGCGTCGGTATGCTCGGTAAATGCCGCAA
GGGTGGCGGATGATCGTGATCAATCGCCCCCAAGAACCGCCGCAGATGCA
CCTGCTGGTAGCCACGGCGCCCACGTCTCCAAACCGGAGGGGAAATCACA
AATCTCTACTGCTGGTGGCGACGGGAAAGAATCACCTTCCACTGTTAACA
CCCCAGAGGGACTCAGTGCAGCACTGGAGCCGATGTCAGAGGTTGCACCG
TTTGCGCCAAGCGCGCCCGATGAATCGAGCGCTTTAGCAGCAGAACTCAA
CACATCGAATACCCCCAGCAGCACAATAGCTCTAGCAGCCCTACCCGGAC
CGAACGAGATGGGGGTCACGGTGGCCGTAGGCGGGGCGGCGGCATCAGCG
ACGGTGACGGCGGCAGCGATGACGCCTTGTATATCACATAATGGCCTCCT
CGTGACTGAGAAGTTGGGGCTCGCTGGGGAGGACGTTGCCTCATATTCGG
GGCCTGGCACTGCGAGGTTTCTAGTGGCGCTCGGATTCGCATGCACTGCA
ACGCTGTGCAAGGAGATAGGGGTGACTGTGTTTGGACTCATGGCGGGAGC
GGATGTGGTGCGGTTTTTGGACGAGAGCAACTACTGTCAGTCGAGGGCGA
AATCAGCGGCTGGAGATGAGGTTTCAGGCGAGTATATGCGGGGGAAAGGG
AACGCTAAGTATTAGCTACTAGTATGATGGAGGGGAACAACGTTTTGCCG
GGATCTCCAAAGTTGGAAGCTATTAATAGTTTCCGCTGGAGTTGGTATTA
TCTTCGACGCGAGAGCACCGAGTTTAATCGCGTTTAAGATAGCGGCAACA
CTGTTGAGATGGTGAGGTTAAACGATGTCGGCGAGGTTGCAATAATAACG
AGGATTGGTGAACTATTGAGCGTTTCAAAACTCAAACCGAGAAATTTTCT
GTGGGTTCCTTGCACCCTCTGCAGTACACTGGGCCATTCCAGGCCCCCGC
TATGAGTTTTGATCCCGGGGGGGCCTTAACAAATTATTTAAGCAGCGCAT
CAGCGACCACGCGTGCCCAGGAAAATGCACAGTAGTTGTACCCAGTTACG
AGAATTATGTTTTACCTGCAACTGGCAGTCTATGACCTCTTCAATGGCAA
GCCATGACTCTGACACAACAAAGTTTTTTTCTATCCCTGGCCCTTCCCTC
GTGTAACGCCTCTTCCCCGCTTGCGTTGCGCGAACAGTGCCGACGAGGCT
GCGTGAGGCACTGCGGAGGCGTTTGTGCCGGTTCAAACCCGTGCCAGCTG
CCGCAAGGGTTACTGCGGCCGGGGTTTGCGCCCTTGCGTTGGTCTTGATG
CACTATAGTTTGCACGAGGGGGCCGAGGTTCGAGAGTGGGGCGTGCTTGA
GAACGACATCTCTATCCTGCCAAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7909:8120..10547-

>mRNA_M-pyrifera_M_contig7909.18574.1 ID=mRNA_M-pyrifera_M_contig7909.18574.1|Name=mRNA_M-pyrifera_M_contig7909.18574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2718bp|location=Sequence derived from alignment at M-pyrifera_M_contig7909:8120..10547- (Macrocystis pyrifera P11B4 male)
GACGAATTACCGGCGGTCGCTGCGTCGCTGTTGTTTGCGGTTCACCCTGT
GCATGTTGAGGACGAATTACCGGCGGTCGCTGCGTCGCTGTTGTTTGCGG
TTCACCCTGTGCATGTTGAGGCTGTTGCCCCCATTGTTGGCAGAGCCGAT
TTACTCTGCGGCTTTTTCGCAGTGATCGCCCTTTCCCTCACGGTGGGAGG
CCGATCCCCTTCCACGACGTCAAACAAGCCCAAGGGTTACGCTCGCGTCG
AAAAGCTGAAAACGAGTAGTCACAACCAGCACAGCAAGGGGAGCACGCGC
AGCAGTTGTAGCAAACGAAGCAAGCGAGGCAAGCGAAGCAAGCGAGGCAA
GAGAGGCGAGCAGAGCGGCGTTGCGGGGGCGGGGAAAGAGTCATCAGCAA
AGCTCGGGGTCGTCCATGATTCTGCCCGTCAAGGCGTTGCCGCGGCCCGC
CAAGATGTCGCTGTTCCGCCAGTCAAAGTTGCATCGACAGCGATCAGCGG
TATCACAAGGGCCAACAATGTCTTGGTAGGTAGATCTGGAACTAGTTCAA
CAGCGTCGGTATGCTCGGTAAATGCCGCAAGGGTGGCGGATGATCGTGAT
CAATCGCCCCCAAGAACCGCCGCAGATGCACCTGCTGGTAGCCACGGCGC
CCACGTCTCCAAACCGGAGGGGAAATCACAAATCTCTACTGCTGGTGGCG
ACGGGAAAGAATCACCTTCCACTGTTAACACCCCAGAGGGACTCAGTGCA
GCACTGGAGCCGATGTCAGAGGTTGCACCGTTTGCGCCAAGCGCGCCCGA
TGAATCGAGCGCTTTAGCAGCAGAACTCAACACATCGAATACCCCCAGCA
GCACAATAGCTCTAGCAGCCCTACCCGGACCGAACGAGATGGGGGTCACG
GTGGCCGTAGGCGGGGCGGCGGCATCAGCGACGGTGACGGCGGCAGCGAT
GACGCCTTGTATATCACATAATGGCCTCCTCGTGACTGAGAAGTTGGGGC
TCGCTGGGGAGGACGTTGCCTCATATTCGGGGCCTGGCACTGCGAGGTTT
CTAGTGGCGCTCGGATTCGCATGCACTGCAACGCTGTGCAAGGAGATAGG
GGTGACTGTGTTTGGACTCATGGCGGGAGCGGATGTGGTGCGGTTTTTGG
ACGAGAGCAACTACTGTCAGTCGAGGGCGAAATCAGCGGCTGGAGATGAG
GTTTCAGGCGAGTATATGCGGGGGAAAGGGAACGCTAAGCTGTTGCCCCC
ATTGTTGGCAGAGCCGATTTACTCTGCGGCTTTTTCGCAGTGATCGCCCT
TTCCCTCACGGTGGGAGGCCGATCCCCTTCCACGACGTCAAACAAGCCCA
AGGGTTACGCTCGCGTCGAAAAGCTGAAAACGAGTAGTCACAACCAGCAC
AGCAAGGGGAGCACGCGCAGCAGTTGTAGCAAACGAAGCAAGCGAGGCAA
GCGAAGCAAGCGAGGCAAGAGAGGCGAGCAGAGCGGCGTTGCGGGGGCGG
GGAAAGAGTCATCAGCAAAGCTCGGGGTCGTCCATGATTCTGCCCGTCAA
GGCGTTGCCGCGGCCCGCCAAGATGTCGCTGTTCCGCCAGTCAAAGTTGC
ATCGACAGCGATCAGCGGTATCACAAGGGCCAACAATGTCTTGGTAGGTA
GATCTGGAACTAGTTCAACAGCGTCGGTATGCTCGGTAAATGCCGCAAGG
GTGGCGGATGATCGTGATCAATCGCCCCCAAGAACCGCCGCAGATGCACC
TGCTGGTAGCCACGGCGCCCACGTCTCCAAACCGGAGGGGAAATCACAAA
TCTCTACTGCTGGTGGCGACGGGAAAGAATCACCTTCCACTGTTAACACC
CCAGAGGGACTCAGTGCAGCACTGGAGCCGATGTCAGAGGTTGCACCGTT
TGCGCCAAGCGCGCCCGATGAATCGAGCGCTTTAGCAGCAGAACTCAACA
CATCGAATACCCCCAGCAGCACAATAGCTCTAGCAGCCCTACCCGGACCG
AACGAGATGGGGGTCACGGTGGCCGTAGGCGGGGCGGCGGCATCAGCGAC
GGTGACGGCGGCAGCGATGACGCCTTGTATATCACATAATGGCCTCCTCG
TGACTGAGAAGTTGGGGCTCGCTGGGGAGGACGTTGCCTCATATTCGGGG
CCTGGCACTGCGAGGTTTCTAGTGGCGCTCGGATTCGCATGCACTGCAAC
GCTGTGCAAGGAGATAGGGGTGACTGTGTTTGGACTCATGGCGGGAGCGG
ATGTGGTGCGGTTTTTGGACGAGAGCAACTACTGTCAGTCGAGGGCGAAA
TCAGCGGCTGGAGATGAGGTTTCAGGCGAGTATATGCGGGGGAAAGGGAA
CGCTAAGCTGCGTGAGGCACTGCGGAGGCGTTTGTGCCGGTTCAAACCCG
TGCCAGCTGCCGCAAGGGTTACTGCGGCCGGGGTTTGCGCCCTTGCGTTG
GTCTTGATGCACTATAGTTTGCACGAGGGGGCCGAGGTTCGAGAGTGGGG
CGTGCTTGAGAACGACATCTCTATCCTGCCAAGGTAGGCTGCGTGAGGCA
CTGCGGAGGCGTTTGTGCCGGTTCAAACCCGTGCCAGCTGCCGCAAGGGT
TACTGCGGCCGGGGTTTGCGCCCTTGCGTTGGTCTTGATGCACTATAGTT
TGCACGAGGGGGCCGAGGTTCGAGAGTGGGGCGTGCTTGAGAACGACATC
TCTATCCTGCCAAGGTAG
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