mRNA_M-pyrifera_M_contig79055.18567.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79055.18567.1
Unique NamemRNA_M-pyrifera_M_contig79055.18567.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Match: A0A7S1C9I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9I7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.130e-29
Identity = 71/133 (53.38%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:    4 LQAQQFVKFARECGIVGEKGGRGGRRGVSEAEVNVVYVSEVKRKGRVGSRQKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDPDSVAVFLEDPDVAKLEAYYHDALEQIFFFYATGS 402
            L+A QFVK AR+  IVG  G       V EA++NV Y +EVKRK R G  Q+M + DFLT+LMK+S +VYP     SVDDAFQ+LL+++VL  A RR PD+V VFL + +V  +  YY DALE IF FYA+ S
Sbjct:   29 LRATQFVKLARDTRIVGGTG-------VREADINVAYTAEVKRKDRRGV-QRMTYNDFLTALMKVSTKVYPDAP--SVDDAFQQLLMEHVLPLASRRCPDNVEVFLNNEEVQAMFEYYADALEAIFQFYASSS 151
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BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Match: A0A5A8D6G0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D6G0_CAFRO)

HSP 1 Score: 116 bits (291), Expect = 6.820e-28
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 1 
Query:    4 LQAQQFVKFARECGIVGEKGGRGGRRGVSEAEVNVVYVSEVKRKGRVGSR---QKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDPDSVAVFLED--PDVAKLEAYYHDALEQIFFFYATGSD 405
            +++QQFVKF + C IVG  G       +  A+V V Y +EVKRK   G+    QKM+F DFLT+LMKLS RVYP E R SVD AF++LL++NVL +A  R P  + +   +  P++  L   ++DALEQIF +YATG+D
Sbjct:   27 MRSQQFVKFCKTCQIVGS-GTSTAAEPLVVADVVVAYTAEVKRKRPAGTPRTGQKMDFSDFLTALMKLSARVYPGEKRASVDAAFEKLLLNNVLPFAESRSPAELDITEHEGNPELEDLRDIFNDALEQIFQYYATGAD 164
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BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Match: A0A812QPX7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QPX7_9DINO)

HSP 1 Score: 114 bits (284), Expect = 4.190e-27
Identity = 63/131 (48.09%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:    4 LQAQQFVKFARECGIVGEKGGRGGRRGVSEAEVNVVYVSEVKRKGRVGSRQKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDPDSVAVFLEDPDVAKLEAYYHDALEQIFFFYAT 396
            ++  QFV+FAR+ G+VGE         + +A + V Y ++V RK R G + +MN+ DFLT++MKL+ RVYP     SVD+AFQ LL+ N+L +A RR    +   L DPDV KL AY+ DALEQIF FY T
Sbjct:   34 IRQTQFVRFARDVGMVGEDATSEALTPLVDANIEVAYTAQVNRKSRKGPK-RMNYHDFLTTIMKLASRVYPHAT--SVDEAFQTLLMRNILPHAWRRQVQDMDDILLDPDVMKLYAYFGDALEQIFQFYGT 161
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BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Match: A0A7S1TQF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQF6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.600e-9
Identity = 38/120 (31.67%), Postives = 65/120 (54.17%), Query Frame = 1 
Query:   85 VSEAEVNVVYVSEVKRKGRVG----------------SRQKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDPDSVAVFLEDPDVAKLEAYYHDALEQIFFFYAT 396
            +S A+VN+++ +E +R  +                  +  K+ + +FL  L+++S R+Y  +   S +DA Q+LL++NVL  A RR+P SV+  L       L  YY  AL++IF +YA+
Sbjct:  108 LSAADVNLIFAAEAQRSRKAADAAHELESASTAHGSSANLKLTYYEFLNVLLRISQRLYGHKL--SQEDAMQKLLMENVLPRASRRNPASVSRILRSAAFRNLYDYYKGALKEIFMYYAS 225
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BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Match: A0A7S3CYC3_9EUKA (Hypothetical protein n=16 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CYC3_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 3.590e-5
Identity = 35/138 (25.36%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:    4 LQAQQFVKFARECGIVGEKGGRGGRRGVSEAEVNVVYVSEVKRKGRVGS------RQKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDPDSVAVFLEDPDVAKLEAYYHDALEQIFFFYATG 399
            +  ++F KFA++C +  +         +  A ++V++V     K   GS       +++  G+F  SL+++S   Y   AR ++    Q L+  N+L++AGR DP+        P++  +   Y+D L ++F+ Y+ G
Sbjct:  836 ISMKEFWKFAKDCKLASKS--------LPLAAIDVIFVRS-NWKSSEGSGDIHNPERELIPGEFSESLLRISSAKYDGSAR-TLSQKLQTLIDMNILKFAGRADPNKWRRDFARPEIDSVFKEYYDDLWKVFYCYSDG 963
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79055.18567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S1C9I7_9STRA1.130e-2953.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8D6G0_CAFRO6.820e-2848.20Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A812QPX7_9DINO4.190e-2748.09Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1TQF6_9STRA3.600e-931.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3CYC3_9EUKA3.590e-525.36Hypothetical protein n=16 Tax=Palpitomonas bilix T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79055contigM-pyrifera_M_contig79055:296..700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.6271696-CDS-M-pyrifera_M_contig79055:295..7001622816693.6271696-CDS-M-pyrifera_M_contig79055:295..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79055 296..700 -
1692278123.6291978-CDS-M-pyrifera_M_contig79055:295..7001692278123.6291978-CDS-M-pyrifera_M_contig79055:295..700Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79055 296..700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79055.18567.1prot_M-pyrifera_M_contig79055.18567.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79055 296..700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79055.18567.1

>prot_M-pyrifera_M_contig79055.18567.1 ID=prot_M-pyrifera_M_contig79055.18567.1|Name=mRNA_M-pyrifera_M_contig79055.18567.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
CLQAQQFVKFARECGIVGEKGGRGGRRGVSEAEVNVVYVSEVKRKGRVGS
RQKMNFGDFLTSLMKLSVRVYPAEARKSVDDAFQRLLVDNVLRYAGRRDP
DSVAVFLEDPDVAKLEAYYHDALEQIFFFYATGSD
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mRNA from alignment at M-pyrifera_M_contig79055:296..700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79055.18567.1 ID=mRNA_M-pyrifera_M_contig79055.18567.1|Name=mRNA_M-pyrifera_M_contig79055.18567.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig79055:296..700- (Macrocystis pyrifera P11B4 male)
TGCTTGCAGGCGCAGCAGTTCGTGAAGTTTGCTCGGGAGTGCGGGATCGT
GGGCGAGAAGGGCGGGAGGGGCGGTCGTCGCGGCGTGAGTGAGGCAGAGG
TGAACGTGGTGTACGTGAGCGAGGTGAAGCGGAAGGGTCGCGTTGGGAGT
CGTCAGAAGATGAACTTTGGGGACTTTCTAACGTCTCTGATGAAGCTGTC
GGTGCGCGTGTACCCAGCAGAGGCTCGGAAGAGTGTGGACGACGCATTCC
AGCGTCTGTTGGTGGACAATGTGCTGCGGTATGCGGGCCGAAGAGACCCA
GATTCTGTGGCGGTGTTCTTGGAGGACCCAGATGTGGCGAAACTCGAAGC
CTACTACCACGATGCGCTAGAACAGATTTTCTTCTTCTACGCCACGGGCA
GCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79055:296..700-

>mRNA_M-pyrifera_M_contig79055.18567.1 ID=mRNA_M-pyrifera_M_contig79055.18567.1|Name=mRNA_M-pyrifera_M_contig79055.18567.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig79055:296..700- (Macrocystis pyrifera P11B4 male)
TGCTTGCAGGCGCAGCAGTTCGTGAAGTTTGCTCGGGAGTGCGGGATCGT
GGGCGAGAAGGGCGGGAGGGGCGGTCGTCGCGGCGTGAGTGAGGCAGAGG
TGAACGTGGTGTACGTGAGCGAGGTGAAGCGGAAGGGTCGCGTTGGGAGT
CGTCAGAAGATGAACTTTGGGGACTTTCTAACGTCTCTGATGAAGCTGTC
GGTGCGCGTGTACCCAGCAGAGGCTCGGAAGAGTGTGGACGACGCATTCC
AGCGTCTGTTGGTGGACAATGTGCTGCGGTATGCGGGCCGAAGAGACCCA
GATTCTGTGGCGGTGTTCTTGGAGGACCCAGATGTGGCGAAACTCGAAGC
CTACTACCACGATGCGCTAGAACAGATTTTCTTCTTCTACGCCACGGGCA
GCGACTGCTTGCAGGCGCAGCAGTTCGTGAAGTTTGCTCGGGAGTGCGGG
ATCGTGGGCGAGAAGGGCGGGAGGGGCGGTCGTCGCGGCGTGAGTGAGGC
AGAGGTGAACGTGGTGTACGTGAGCGAGGTGAAGCGGAAGGGTCGCGTTG
GGAGTCGTCAGAAGATGAACTTTGGGGACTTTCTAACGTCTCTGATGAAG
CTGTCGGTGCGCGTGTACCCAGCAGAGGCTCGGAAGAGTGTGGACGACGC
ATTCCAGCGTCTGTTGGTGGACAATGTGCTGCGGTATGCGGGCCGAAGAG
ACCCAGATTCTGTGGCGGTGTTCTTGGAGGACCCAGATGTGGCGAAACTC
GAAGCCTACTACCACGATGCGCTAGAACAGATTTTCTTCTTCTACGCCAC
GGGCAGCGAC
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