mRNA_M-pyrifera_M_contig79007.18559.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig79007.18559.1
Unique NamemRNA_M-pyrifera_M_contig79007.18559.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig79007.18559.1 vs. uniprot
Match: A0A8D9FGU2_9HEMI (Zinc finger protein 614 n=6 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9FGU2_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 2.430e-9
Identity = 27/75 (36.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    1 CLECDYKAQTRHGLQIHVARKHRRKISLLCCGDCGKSFKSSSGLRRHKRSYHEGVRYSCSRCPKSFTYQSALRLH 225
            C  C   A+     Q+ +       +    CG CGK+FK  + +  H++++HEGVRY C++CPK F  QS L +H
Sbjct:  383 CFMCSKCAKPFSETQLLMEHVRECTVVGYTCGTCGKNFKFKNSMVTHRKTFHEGVRYKCTKCPKIFMAQSKLNIH 457
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BLAST of mRNA_M-pyrifera_M_contig79007.18559.1 vs. uniprot
Match: A0A8D9EXC3_9HEMI (Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EXC3_9HEMI)

HSP 1 Score: 49.7 bits (117), Expect = 3.860e-5
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:  100 CGKSFKSSSGLRRHKRSYHEGVRYSCSRCPKSFTYQSALRLH 225
            C KSF     L +H RS HEG++Y CS+C KSF  +S LR H
Sbjct:    2 CPKSFSRKGELNKHVRSTHEGIKYPCSKCSKSFLDRSNLRRH 43
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BLAST of mRNA_M-pyrifera_M_contig79007.18559.1 vs. uniprot
Match: UPI001EB047B9 (uncharacterized protein LOC124142196 n=7 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB047B9)

HSP 1 Score: 50.4 bits (119), Expect = 7.130e-5
Identity = 21/46 (45.65%), Postives = 24/46 (52.17%), Query Frame = 1 
Query:   91 CGDCGKSFKSSSGLRRHKRSYHEGVRYSCSRCPKSFTYQSALRLHE 228
            C  CGK F     L RH RS H+G RY+C  C KSF     L  H+
Sbjct:   45 CPQCGKGFNRKDNLSRHMRSVHQGERYACDHCTKSFASNQKLNKHK 90
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BLAST of mRNA_M-pyrifera_M_contig79007.18559.1 vs. uniprot
Match: A0A7M7JX21_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7JX21_VARDE)

HSP 1 Score: 50.4 bits (119), Expect = 7.190e-5
Identity = 27/81 (33.33%), Postives = 36/81 (44.44%), Query Frame = 1 
Query:    1 CLECDYKAQTRHGLQIHVARKHRRKISLLCCGDCGKSFKSSSGLRRHKRSYHEGVRYSCSR--CPKSFTYQSALRLHEQTH 237
            C  C+Y A+ R  L +HV   H  K+  + C  C K F     L  HK + H G  + C    C +SF  +  LR H   H
Sbjct: 1926 CDHCEYVAEKRRQLVLHVKNVHADKM--IACDACDKRFAFKISLWNHKNAMHLGAEHKCPHPHCTRSFKDEDKLRTHLFVH 2004
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig79007.18559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8D9FGU2_9HEMI2.430e-936.00Zinc finger protein 614 n=6 Tax=Cacopsylla melanon... [more]
A0A8D9EXC3_9HEMI3.860e-552.38Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsyll... [more]
UPI001EB047B97.130e-545.65uncharacterized protein LOC124142196 n=7 Tax=Halio... [more]
A0A7M7JX21_VARDE7.190e-533.33Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig79007contigM-pyrifera_M_contig79007:558..956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog7070.TC003947-PA
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger protein
EggNOG OGs38BZ9@33154,3BA9A@33208,3CT35@33213,3SJ74@50557,41WW3@6656,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816693.2089148-CDS-M-pyrifera_M_contig79007:557..7971622816693.2089148-CDS-M-pyrifera_M_contig79007:557..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79007 558..797 -
1692278123.4141345-CDS-M-pyrifera_M_contig79007:557..7971692278123.4141345-CDS-M-pyrifera_M_contig79007:557..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79007 558..797 -
1622816693.2189443-CDS-M-pyrifera_M_contig79007:875..9561622816693.2189443-CDS-M-pyrifera_M_contig79007:875..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79007 876..956 -
1692278123.4259202-CDS-M-pyrifera_M_contig79007:875..9561692278123.4259202-CDS-M-pyrifera_M_contig79007:875..956Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig79007 876..956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig79007.18559.1prot_M-pyrifera_M_contig79007.18559.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig79007 558..956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig79007.18559.1

>prot_M-pyrifera_M_contig79007.18559.1 ID=prot_M-pyrifera_M_contig79007.18559.1|Name=mRNA_M-pyrifera_M_contig79007.18559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
CLECDYKAQTRHGLQIHVARKHRRKISLLCCGDCGKSFKSSSGLRRHKRS
YHEGVRYSCSRCPKSFTYQSALRLHEQTHDGVRHVCEECGKSYSYRSNLL
SHIKSSH
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mRNA from alignment at M-pyrifera_M_contig79007:558..956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig79007.18559.1 ID=mRNA_M-pyrifera_M_contig79007.18559.1|Name=mRNA_M-pyrifera_M_contig79007.18559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig79007:558..956- (Macrocystis pyrifera P11B4 male)
TGTTTGGAATGTGACTACAAGGCTCAGACACGTCATGGTCTGCAGATTCA
TGTCGCTCGCAAACATCGTCGTAAGATTTCCGTTGGATGCAATCTTTGTC
TTCGTCAGGTCCCTGTTCATTATTGGCGTGATCACCTTGGTAGGTATCAT
CGTCATGAGTTGTTGTGTTGTGGTGATTGTGGGAAGTCCTTCAAGTCTTC
CAGTGGTCTTCGACGGCACAAGAGGAGCTATCATGAAGGTGTTCGCTATT
CTTGCTCTCGATGCCCCAAATCCTTCACTTATCAATCTGCTCTTCGTCTT
CACGAGCAGACTCATGATGGAGTGAGGCATGTGTGTGAGGAGTGTGGGAA
ATCATATTCATATCGCTCCAATCTCCTCTCCCACATCAAGTCATCTCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig79007:558..956-

>mRNA_M-pyrifera_M_contig79007.18559.1 ID=mRNA_M-pyrifera_M_contig79007.18559.1|Name=mRNA_M-pyrifera_M_contig79007.18559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig79007:558..956- (Macrocystis pyrifera P11B4 male)
TGTTTGGAATGTGACTACAAGGCTCAGACACGTCATGGTCTGCAGATTCA
TGTCGCTCGCAAACATCGTCGTAAGATTTCCTGTTTGGAATGTGACTACA
AGGCTCAGACACGTCATGGTCTGCAGATTCATGTCGCTCGCAAACATCGT
CGTAAGATTTCCTTGTTGTGTTGTGGTGATTGTGGGAAGTCCTTCAAGTC
TTCCAGTGGTCTTCGACGGCACAAGAGGAGCTATCATGAAGGTGTTCGCT
ATTCTTGCTCTCGATGCCCCAAATCCTTCACTTATCAATCTGCTCTTCGT
CTTCACGAGCAGACTCATGATGGAGTGAGGCATGTGTGTGAGGAGTGTGG
GAAATCATATTCATATCGCTCCAATCTCCTCTCCCACATCAAGTCATCTC
ACTTGTTGTGTTGTGGTGATTGTGGGAAGTCCTTCAAGTCTTCCAGTGGT
CTTCGACGGCACAAGAGGAGCTATCATGAAGGTGTTCGCTATTCTTGCTC
TCGATGCCCCAAATCCTTCACTTATCAATCTGCTCTTCGTCTTCACGAGC
AGACTCATGATGGAGTGAGGCATGTGTGTGAGGAGTGTGGGAAATCATAT
TCATATCGCTCCAATCTCCTCTCCCACATCAAGTCATCTCAC
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