mRNA_M-pyrifera_M_contig78628.18477.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: D8LNY9_ECTSI (DNA repair helicase rad5,16, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY9_ECTSI) HSP 1 Score: 104 bits (259), Expect = 5.420e-28 Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNL 189 ++WTHMLDLAE S+ARGGWTFRRLDGAMSQQ+RES+LK F TD SV+V+LVSLKAGGVGLNL Sbjct: 14 SQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNL 75
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.270e-25 Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WTHMLDLAE S+ARGGWTFRRLDGAMSQQ+RES+LK F TD SV+V+LVSLKAGGVGLNLTA Sbjct: 1470 SQWTHMLDLAEASIARGGWTFRRLDGAMSQQQRESALKGFATDESVTVMLVSLKAGGVGLNLTA 1533
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A6V1XFX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XFX6_HETAK) HSP 1 Score: 78.2 bits (191), Expect = 2.090e-16 Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLT 192 ++WT+MLDL E + R GW RLDG+MSQQ+RE +L+ F T+ + V+L+SLKAGGVGLNLT Sbjct: 47 SQWTYMLDLVEVLLRRMGWRHTRLDGSMSQQQREDALERFATETDIPVMLLSLKAGGVGLNLT 109
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A0L0H763_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H763_SPIPD) HSP 1 Score: 75.5 bits (184), Expect = 2.150e-14 Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLT 192 ++WT+MLDL E S+ G+ F RLDG MS+Q R +++SF TD SV+V+LVSLKAGGVGLNLT Sbjct: 1110 SQWTNMLDLLEPSLRTYGFGFVRLDGKMSRQDRTDAMESFKTDPSVTVMLVSLKAGGVGLNLT 1172
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: SM3L2_ARATH (DNA repair protein RAD5A n=19 Tax=Brassicaceae TaxID=3700 RepID=SM3L2_ARATH) HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13 Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WT LDL + ++R ++F RLDG +SQQ+RE LK F D S+ VLL+SLKAGGVG+NLTA Sbjct: 886 SQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTA 949
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: UPI0012630830 (DNA repair protein RAD5A isoform X1 n=3 Tax=Pistacia vera TaxID=55513 RepID=UPI0012630830) HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13 Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WT LDL + ++R TF RLDG ++QQRRE LK F D +V VLL+SLKAGGVG+NLTA Sbjct: 890 SQWTAFLDLLQIPLSRNNITFLRLDGTLTQQRREKVLKQFSEDTNVLVLLMSLKAGGVGINLTA 953
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A485LGA6_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGA6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.910e-13 Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WTHMLDL E+++ + G++ R DG++ Q+ RE L F+ D +V VL++SLKAGGVGLNLTA Sbjct: 835 SQWTHMLDLVESTLVQHGYSHARFDGSLKQEDRERVLNRFNADPAVRVLVISLKAGGVGLNLTA 898
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A0K9RQK1_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RQK1_SPIOL) HSP 1 Score: 72.0 bits (175), Expect = 3.560e-13 Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WT LDL E + R +F RLDG +SQQ+RE LK F D+ V VLL+SLKAGGVG+NLTA Sbjct: 887 SQWTAFLDLLEIPLTRNNISFLRLDGTLSQQQRERVLKKFSEDSDVMVLLMSLKAGGVGINLTA 950
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A484N638_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484N638_9ASTE) HSP 1 Score: 72.0 bits (175), Expect = 3.560e-13 Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLTA 195 ++WT LDL + +++R G +F RLDG ++QQ RE +K+F + SV VLL+SLKAGGVGLNLTA Sbjct: 910 SQWTAFLDLLQIALSRNGISFLRLDGTLNQQHREKVIKTFSEEHSVLVLLMSLKAGGVGLNLTA 973
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Match: A0A6B2LL46_9EUKA (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LL46_9EUKA) HSP 1 Score: 69.3 bits (168), Expect = 3.850e-13 Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 4 TKWTHMLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAGGVGLNLT 192 ++WT MLDL E + G F RLDG+M+Q R+++++SF+TD ++ + LVS+KAGG+GLNLT Sbjct: 33 SQWTTMLDLLEKPLKARGHQFVRLDGSMAQNHRQTAIESFNTDPNIKIFLVSMKAGGLGLNLT 95 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78628.18477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig78628.18477.1 >prot_M-pyrifera_M_contig78628.18477.1 ID=prot_M-pyrifera_M_contig78628.18477.1|Name=mRNA_M-pyrifera_M_contig78628.18477.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp MLDLAETSMARGGWTFRRLDGAMSQQRRESSLKSFDTDASVSVLLVSLKAback to top mRNA from alignment at M-pyrifera_M_contig78628:161..820+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig78628.18477.1 ID=mRNA_M-pyrifera_M_contig78628.18477.1|Name=mRNA_M-pyrifera_M_contig78628.18477.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig78628:161..820+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig78628:161..820+ >mRNA_M-pyrifera_M_contig78628.18477.1 ID=mRNA_M-pyrifera_M_contig78628.18477.1|Name=mRNA_M-pyrifera_M_contig78628.18477.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig78628:161..820+ (Macrocystis pyrifera P11B4 male)back to top |