mRNA_M-pyrifera_M_contig78499.18448.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78499.18448.1
Unique NamemRNA_M-pyrifera_M_contig78499.18448.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A350KKK3_9PLAN (MotA_ExbB domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KKK3_9PLAN)

HSP 1 Score: 74.3 bits (181), Expect = 7.010e-14
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSIKNNVLN 231
            S A  +SPL WG   T  FY +IPYLP Y+  + RY CSH LEY   GLFF+GMAI+  + I + ++++SI    ++
Sbjct:   20 SKAILKSPLFWGTAATFGFYALIPYLPVYRSLIDRYFCSHPLEYATAGLFFIGMAIIGVKGIGMLSQKKSISETKID 96          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A2E2C6K2_9PLAN (MotA_ExbB domain-containing protein n=13 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C6K2_9PLAN)

HSP 1 Score: 72.0 bits (175), Expect = 5.670e-13
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSI 213
            S A  +SPL WG+  T  FY +IPYLP Y+  + RY CSH LEY   GLFF+GMAI+  + I + ++++S+
Sbjct:   20 SKAILKSPLFWGMAGTFGFYALIPYLPVYRSLIDRYFCSHPLEYATAGLFFIGMAIIGVKGIGMLSQKKSM 90          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A517X2M0_9PLAN (MotA/TolQ/ExbB proton channel family protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X2M0_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 7.750e-13
Identity = 34/71 (47.89%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSI 213
            S A  +SPL WG   T  FY +IP+LP YQ  V+RY CSH LEY    LFF+GMAI+  + I +  + +S+
Sbjct:   20 SKAVLKSPLFWGTAATFGFYALIPHLPLYQALVERYFCSHPLEYATTALFFIGMAIIGVKGIGMHGQNKSL 90          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A2E7CXF1_9PLAN (MotA_ExbB domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CXF1_9PLAN)

HSP 1 Score: 69.3 bits (168), Expect = 5.030e-12
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   16 QSPLLWGVTVTVVFYMM-----------IPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSIKNNVL 228
             SPLLWG  +T+ FY+M            P +P  Q  + RY CSH LEY    LFF+GMA+L+++ IRL+ ER+S+K +++
Sbjct:   22 MSPLLWGSAMTIAFYVMCMVWRVIRVSLFPDVPVEQDLLIRYFCSHPLEYATTALFFLGMAVLLTKAIRLKKERKSLKADII 103          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A2E7KHE6_9PLAN (MotA_ExbB domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KHE6_9PLAN)

HSP 1 Score: 67.4 bits (163), Expect = 2.410e-11
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSI 213
            S A  +SPL WG   T  FY +IP+LP Y+  V RY CSH LEY    LFF+GMAI+  + + +  +++S+
Sbjct:   38 SKAVLKSPLFWGAAATFGFYALIPHLPLYRDLVDRYFCSHPLEYATAALFFIGMAIIGVKGMGMFVQKKSL 108          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A517RBD3_9PLAN (MotA/TolQ/ExbB proton channel family protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RBD3_9PLAN)

HSP 1 Score: 67.0 bits (162), Expect = 3.290e-11
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSIKNNVLN 231
            S A  +SPL WG   T  FY +IP+LP Y+  + RY CSH LEY    LFF+GM+I+  + + + ++++S+ +  ++
Sbjct:   20 SKAVLKSPLFWGAAATFGFYALIPHLPVYRSLIDRYFCSHPLEYATAALFFIGMSIIGVKGMGMLSQKKSLTDTKID 96          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A7W0RQR6_9PLAN (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0RQR6_9PLAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.570e-10
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   22 PLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSI 213
            P+LWGV  T  FY  +P+LP  +    RY C H +EY   GLFF+GMA+L  + +RL  ER++I
Sbjct:   24 PVLWGVAATFAFYATLPFLPAQREFALRYFCGHWIEYTTTGLFFLGMALLAKKALRLSQERQAI 87          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A3L7Q8R3_9BACT (MotA_ExbB domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q8R3_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.900e-10
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   16 QSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISRWIRLRAE 201
             SP +WG  +TV FY+ IP+L  +Q    RY CSH +EYL VGLFFVGM +L  +   LR E
Sbjct:   30 HSPWVWGAFLTVGFYLAIPHLTIWQAEAYRYFCSHWVEYLEVGLFFVGMVVLTQKAGGLRRE 91          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: A0A3B8PK96_9PLAN (MotA_ExbB domain-containing protein n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8PK96_9PLAN)

HSP 1 Score: 60.5 bits (145), Expect = 6.650e-9
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1
Query:   19 SPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLFFVGMAILISR 180
            SP+LWG   T  FY+ IPY P     + RY CSH LEY    LFFVGMA+L+ R
Sbjct:   61 SPVLWGCLATGGFYLAIPYSPVAADLLNRYFCSHPLEYATATLFFVGMAVLVMR 114          
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Match: UPI0019A96BCA (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Fuerstiella sp. TaxID=1936112 RepID=UPI0019A96BCA)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   34 GVTVTVVFYMMIPYLP-WYQGTVQ---RYLCSHELEYLLVGLFFVGMAILISRWIRLRAERRSIKN 219
            G+ VTVVFY++ P +   + G  +   RY CSH +EY+  GLFFVGMAIL ++W +L  +R  I N
Sbjct:    9 GIAVTVVFYLVAPPIAKCFSGGPEFLYRYFCSHPIEYVTSGLFFVGMAILAAKWRQLPTDRAVIAN 74          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78499.18448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A350KKK3_9PLAN7.010e-1445.45MotA_ExbB domain-containing protein (Fragment) n=1... [more]
A0A2E2C6K2_9PLAN5.670e-1347.89MotA_ExbB domain-containing protein n=13 Tax=Planc... [more]
A0A517X2M0_9PLAN7.750e-1347.89MotA/TolQ/ExbB proton channel family protein n=2 T... [more]
A0A2E7CXF1_9PLAN5.030e-1242.68MotA_ExbB domain-containing protein n=1 Tax=Planct... [more]
A0A2E7KHE6_9PLAN2.410e-1145.07MotA_ExbB domain-containing protein n=8 Tax=Gimesi... [more]
A0A517RBD3_9PLAN3.290e-1138.96MotA/TolQ/ExbB proton channel family protein n=2 T... [more]
A0A7W0RQR6_9PLAN1.570e-1046.88MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A3L7Q8R3_9BACT1.900e-1051.61MotA_ExbB domain-containing protein (Fragment) n=1... [more]
A0A3B8PK96_9PLAN6.650e-953.70MotA_ExbB domain-containing protein n=2 Tax=Planct... [more]
UPI0019A96BCA1.100e-746.97MotA/TolQ/ExbB proton channel family protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78499contigM-pyrifera_M_contig78499:62..292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.3
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog344747.PM8797T_18229
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.MotA TolQ ExbB proton channel
EggNOG OGs2IZEJ@203682,COG0811@1,COG0811@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816687.2783506-CDS-M-pyrifera_M_contig78499:61..2921622816687.2783506-CDS-M-pyrifera_M_contig78499:61..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78499 62..292 -
1692278119.8570406-CDS-M-pyrifera_M_contig78499:61..2921692278119.8570406-CDS-M-pyrifera_M_contig78499:61..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78499 62..292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78499.18448.1prot_M-pyrifera_M_contig78499.18448.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78499 62..292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78499.18448.1

>prot_M-pyrifera_M_contig78499.18448.1 ID=prot_M-pyrifera_M_contig78499.18448.1|Name=mRNA_M-pyrifera_M_contig78499.18448.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
STAWWQSPLLWGVTVTVVFYMMIPYLPWYQGTVQRYLCSHELEYLLVGLF
FVGMAILISRWIRLRAERRSIKNNVLN
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mRNA from alignment at M-pyrifera_M_contig78499:62..292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78499.18448.1 ID=mRNA_M-pyrifera_M_contig78499.18448.1|Name=mRNA_M-pyrifera_M_contig78499.18448.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig78499:62..292- (Macrocystis pyrifera P11B4 male)
TCCACGGCGTGGTGGCAATCGCCCCTCTTGTGGGGAGTGACCGTCACGGT CGTGTTCTACATGATGATTCCCTACCTGCCATGGTATCAGGGTACGGTTC AACGGTATCTCTGCAGCCATGAACTTGAGTATCTGCTGGTCGGACTGTTC TTTGTCGGCATGGCGATTCTCATTTCTCGCTGGATACGATTGCGAGCCGA ACGTCGCTCCATCAAGAACAACGTCTTGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78499:62..292-

>mRNA_M-pyrifera_M_contig78499.18448.1 ID=mRNA_M-pyrifera_M_contig78499.18448.1|Name=mRNA_M-pyrifera_M_contig78499.18448.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig78499:62..292- (Macrocystis pyrifera P11B4 male)
TCCACGGCGTGGTGGCAATCGCCCCTCTTGTGGGGAGTGACCGTCACGGT
CGTGTTCTACATGATGATTCCCTACCTGCCATGGTATCAGGGTACGGTTC
AACGGTATCTCTGCAGCCATGAACTTGAGTATCTGCTGGTCGGACTGTTC
TTTGTCGGCATGGCGATTCTCATTTCTCGCTGGATACGATTGCGAGCCGA
ACGTCGCTCCATCAAGAACAACGTCTTGAACTCCACGGCGTGGTGGCAAT
CGCCCCTCTTGTGGGGAGTGACCGTCACGGTCGTGTTCTACATGATGATT
CCCTACCTGCCATGGTATCAGGGTACGGTTCAACGGTATCTCTGCAGCCA
TGAACTTGAGTATCTGCTGGTCGGACTGTTCTTTGTCGGCATGGCGATTC
TCATTTCTCGCTGGATACGATTGCGAGCCGAACGTCGCTCCATCAAGAAC
AACGTCTTGAAC
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