mRNA_M-pyrifera_M_contig782.18390.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig782.18390.1
Unique NamemRNA_M-pyrifera_M_contig782.18390.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A6H5L6M4_9PHAE (EFG_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6M4_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.900e-50
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 VTKWVPSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVEE 315
            VTKW PSSQ+ PMFVSMILDPIWQLYDAAV+DKN  KAGRMA KLGLD+P REL+S+DPRTVLQSVMKRWLPLS+AVLRMVVE+GPSPA+AQ TRV VLWP  +E
Sbjct:  138 VTKWTPSSQNTPMFVSMILDPIWQLYDAAVQDKNSAKAGRMAAKLGLDIPPRELASTDPRTVLQSVMKRWLPLSEAVLRMVVERGPSPAEAQTTRVDVLWPPSDE 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A4D9CXS8_9STRA (Tr-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXS8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.280e-26
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 VTKWVPSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWP 303
            ++++ P ++S PMFV+M+LDPIWQLY+AAV ++N  K  RM  KL L++PARE++  D R    S+ +RWLPL++ VL MVVE  P+P  AQ  R++ LWP
Sbjct:  304 ISRYTPENKSKPMFVAMVLDPIWQLYEAAVLEENLQKVRRMIKKLDLEIPAREINPKDLRGTASSIFRRWLPLAKTVLDMVVEVVPNPVVAQQLRIEALWP 404
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: W7U9X5_9STRA (Elongation factor ef-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9X5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.160e-26
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 VTKWVPSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWP 303
            ++++ P ++S PMFV+M+LDPIWQLY+AAV ++N  K  RM  KL L++PARE++  D R    S+ +RWLPL++ VL MVVE  P+P  AQ  R++ LWP
Sbjct:  304 ISRYTPENKSKPMFVAMVLDPIWQLYEAAVLEENLQKVCRMIKKLDLEIPAREINPKDLRGTASSIFRRWLPLAKTVLDMVVEVVPNPVVAQQRRIEALWP 404
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A7S3HQ28_9STRA (Hypothetical protein n=4 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ28_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.420e-22
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:   19 SSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGK-LGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVEE 315
            S    PMF SM+LDP+WQLY+AA+ +++ TKA  MA K  G+ +P RE++  D R  L+++++RWLPLS AVLRM++   P P  AQ +R+  L P V E
Sbjct:  240 SGNEKPMFASMVLDPLWQLYEAALVEQDATKAANMANKGFGVVLPPREINPRDTRATLRAILRRWLPLSDAVLRMIIRTVPDPIAAQQSRLFTLMPGVIE 339
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A2R6WG18_MARPO (Tr-type G domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WG18_MARPO)

HSP 1 Score: 99.8 bits (247), Expect = 3.290e-22
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    1 VTKWVPSSQSPPMFVSMILDPIWQLYDAAVRDKNGT-KAGRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            V K   + +  PMFV  +L+P+W++YD AV+ K+G  K  +M   + L +PAR+L   DP+ VLQ+VM RWLPLS+AVL MVVE  P PA A   RV+ L P  E
Sbjct:  257 VGKKAAAGKYQPMFVQFVLEPLWKVYDVAVQGKDGAEKLNKMITSMNLTIPARDLQQKDPKLVLQAVMSRWLPLSEAVLSMVVECLPDPASAMPERVERLLPTEE 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A2U1MB70_ARTAN (Elongation factor G, III-V domain-containing protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MB70_ARTAN)

HSP 1 Score: 95.9 bits (237), Expect = 7.370e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   16 PSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKA--GRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            P S++ PMFV  +L+P+WQ+Y+AA+ D NG K    ++     L VP REL + DP+ VLQSVM RWLPLS A+L MVV+  P P  AQ+ R+  L P  E
Sbjct:  269 PGSKARPMFVQFVLEPLWQVYEAAL-DTNGDKGILEKLIKSFSLSVPPRELQNKDPKFVLQSVMSRWLPLSDAILSMVVKHMPDPVTAQSFRISRLLPKRE 368
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A2U1MNG5_ARTAN (Elongation factor G, III-V domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MNG5_ARTAN)

HSP 1 Score: 95.9 bits (237), Expect = 7.460e-21
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 1 
Query:   16 PSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKA--GRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            P S++ PMFV  +L+P+WQ+Y+AA+ D NG K    ++     L VP REL + DP+ VLQSVM RWLPLS A+L MVV+  P P  AQ  R+  L P  E
Sbjct:  645 PGSKARPMFVQFVLEPLWQVYEAAL-DTNGDKGILEKLIKSFSLSVPPRELQNKDPKVVLQSVMSRWLPLSDAILSMVVKHMPDPVTAQLFRISRLLPKRE 744
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: W1NE44_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NE44_AMBTC)

HSP 1 Score: 89.0 bits (219), Expect = 1.900e-20
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1 
Query:   19 SSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            +S + PMFV  +L+P+WQ+Y AA+    G    ++     L +PAREL + DP+ VLQ+VM RWLPLS  +L MVV   P P  AQ+ RV  L P  E
Sbjct:   13 TSSNKPMFVQFVLEPLWQVYQAAIAGDQGMLE-KVIKSFNLSIPARELQNKDPKVVLQAVMSRWLPLSDTILSMVVRCMPDPILAQSIRVSRLLPKKE 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A251U3F5_HELAN (Putative ribosomal protein S5/Elongation factor G/III/V family protein n=4 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251U3F5_HELAN)

HSP 1 Score: 93.2 bits (230), Expect = 6.510e-20
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   22 SQSPPMFVSMILDPIWQLYDAAVRDKNGTKA--GRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            S++ PMFV  +L+P+WQ+Y+AA+ D NG K    ++     L VP REL + DP++VLQSV+ RWLPLS A+L MV++  P P  AQA R+  L P  E
Sbjct:  271 SKARPMFVQFVLEPLWQVYEAAL-DTNGDKTILEKLIKSFNLSVPPRELQNKDPKSVLQSVVSRWLPLSDAILSMVIKHMPDPGTAQAFRLSRLLPKRE 368
[Close]
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Match: A0A103Y9Q4_CYNCS (Elongation factor G, III-V domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y9Q4_CYNCS)

HSP 1 Score: 92.8 bits (229), Expect = 8.860e-20
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   22 SQSPPMFVSMILDPIWQLYDAAVRDKNGTKA--GRMAGKLGLDVPARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLWPAVE 312
            S++ PMFV  +L+P+WQ+Y+AA+ + NG K    ++     L VP REL + DP++VLQSVM RWLPLS A+L MVV+  P P  AQ+ RV  L P  E
Sbjct:  270 SKARPMFVQFVLEPLWQVYEAAL-ETNGDKGILEKLIKSFNLSVPNRELQNKDPKSVLQSVMSRWLPLSDAILSMVVKHIPDPISAQSFRVSRLLPKRE 367
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig782.18390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M4_9PHAE2.900e-5081.90EFG_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A4D9CXS8_9STRA1.280e-2650.50Tr-type G domain-containing protein n=1 Tax=Nannoc... [more]
W7U9X5_9STRA2.160e-2650.50Elongation factor ef-2 n=1 Tax=Nannochloropsis gad... [more]
A0A7S3HQ28_9STRA2.420e-2248.00Hypothetical protein n=4 Tax=Spumella elongata Tax... [more]
A0A2R6WG18_MARPO3.290e-2248.57Tr-type G domain-containing protein n=1 Tax=Marcha... [more]
A0A2U1MB70_ARTAN7.370e-2149.50Elongation factor G, III-V domain-containing prote... [more]
A0A2U1MNG5_ARTAN7.460e-2149.50Elongation factor G, III-V domain-containing prote... [more]
W1NE44_AMBTC1.900e-2045.92Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
A0A251U3F5_HELAN6.510e-2048.48Putative ribosomal protein S5/Elongation factor G/... [more]
A0A103Y9Q4_CYNCS8.860e-2049.49Elongation factor G, III-V domain-containing prote... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig782contigM-pyrifera_M_contig782:32208..32748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.4e-44
Seed eggNOG ortholog2880.D7G3I9
Preferred nameEFTUD1
KEGG koko:K03234,ko:K14536
KEGG Pathwayko03008,ko04152,ko04921,map03008,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006412,GO:0006414,GO:0006417,GO:0006448,GO:0006518,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042256,GO:0042278,GO:0042802,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045901,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1990145,GO:2000112
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0467@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko04147
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.8272984-CDS-M-pyrifera_M_contig782:32207..323991622816683.8272984-CDS-M-pyrifera_M_contig782:32207..32399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 32208..32399 +
1692278117.8179185-CDS-M-pyrifera_M_contig782:32207..323991692278117.8179185-CDS-M-pyrifera_M_contig782:32207..32399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 32208..32399 +
1622816683.8414536-CDS-M-pyrifera_M_contig782:32625..327481622816683.8414536-CDS-M-pyrifera_M_contig782:32625..32748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 32626..32748 +
1692278117.8290107-CDS-M-pyrifera_M_contig782:32625..327481692278117.8290107-CDS-M-pyrifera_M_contig782:32625..32748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig782 32626..32748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig782.18390.1prot_M-pyrifera_M_contig782.18390.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig782 32208..32748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig782.18390.1

>prot_M-pyrifera_M_contig782.18390.1 ID=prot_M-pyrifera_M_contig782.18390.1|Name=mRNA_M-pyrifera_M_contig782.18390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
VTKWVPSSQSPPMFVSMILDPIWQLYDAAVRDKNGTKAGRMAGKLGLDVP
ARELSSSDPRTVLQSVMKRWLPLSQAVLRMVVEKGPSPADAQATRVKVLW
PAVEE
back to top

mRNA from alignment at M-pyrifera_M_contig782:32208..32748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig782.18390.1 ID=mRNA_M-pyrifera_M_contig782.18390.1|Name=mRNA_M-pyrifera_M_contig782.18390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=541bp|location=Sequence derived from alignment at M-pyrifera_M_contig782:32208..32748+ (Macrocystis pyrifera P11B4 male)
GTGACGAAGTGGGTGCCGTCCAGCCAGTCGCCGCCGATGTTCGTGTCCAT
GATCCTGGACCCGATCTGGCAGCTCTACGACGCGGCTGTTCGAGACAAGA
ACGGCACGAAGGCGGGAAGGATGGCCGGAAAGCTCGGCTTGGACGTTCCC
GCGCGAGAGCTGTCGTCGTCTGATCCCAGGACCGTGCTTCAGGTGGGAAC
AAGCTGCAGCAGCAGGCAGCGGCACGGTCGGTCGGTCGGTCGGTCCGTCG
GTCGCGAGGGTACACCAGGAACAACAACCCGAGTCGACGTTTATTTTCCG
ATGTGTAGAGTGTGTCATCTATTTCTTCACCCATATCCCCCGTCCCCCAC
CCCCTATACCCCCTATCTAACCCCTATCCCCTCCCCCTGATTACGCCTTC
TCGTTCTCGCTGTTCCAGTCTGTGATGAAGAGGTGGCTCCCTCTCTCGCA
AGCGGTCCTCCGTATGGTGGTGGAAAAAGGACCATCCCCTGCAGACGCCC
AAGCCACTAGGGTCAAGGTGCTCTGGCCTGCTGTGGAGGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig782:32208..32748+

>mRNA_M-pyrifera_M_contig782.18390.1 ID=mRNA_M-pyrifera_M_contig782.18390.1|Name=mRNA_M-pyrifera_M_contig782.18390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig782:32208..32748+ (Macrocystis pyrifera P11B4 male)
GTGACGAAGTGGGTGCCGTCCAGCCAGTCGCCGCCGATGTTCGTGTCCAT
GATCCTGGACCCGATCTGGCAGCTCTACGACGCGGCTGTTCGAGACAAGA
ACGGCACGAAGGCGGGAAGGATGGCCGGAAAGCTCGGCTTGGACGTTCCC
GCGCGAGAGCTGTCGTCGTCTGATCCCAGGACCGTGCTTCAGGTGACGAA
GTGGGTGCCGTCCAGCCAGTCGCCGCCGATGTTCGTGTCCATGATCCTGG
ACCCGATCTGGCAGCTCTACGACGCGGCTGTTCGAGACAAGAACGGCACG
AAGGCGGGAAGGATGGCCGGAAAGCTCGGCTTGGACGTTCCCGCGCGAGA
GCTGTCGTCGTCTGATCCCAGGACCGTGCTTCAGTCTGTGATGAAGAGGT
GGCTCCCTCTCTCGCAAGCGGTCCTCCGTATGGTGGTGGAAAAAGGACCA
TCCCCTGCAGACGCCCAAGCCACTAGGGTCAAGGTGCTCTGGCCTGCTGT
GGAGGAATCTGTGATGAAGAGGTGGCTCCCTCTCTCGCAAGCGGTCCTCC
GTATGGTGGTGGAAAAAGGACCATCCCCTGCAGACGCCCAAGCCACTAGG
GTCAAGGTGCTCTGGCCTGCTGTGGAGGAA
back to top