mRNA_M-pyrifera_M_contig78192.18385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78192.18385.1
Unique NamemRNA_M-pyrifera_M_contig78192.18385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A5A8DK45_CAFRO (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DK45_CAFRO)

HSP 1 Score: 107 bits (267), Expect = 8.450e-25
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 TLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKHAHTILSHANLL 333
            +L  L VE C+D+F+Y + PF+H  VR C   TVVVGA  G+ +V+LC+GCHV  A +Q+R+ N   T  SVY+   P  YGDCR V IGP  + F+     L  A LL
Sbjct:  308 SLRDLTVEGCADAFIYILRPFRHAAVRACSNTTVVVGAAAGILTVDLCEGCHVIGAARQVRIGNSVATTASVYSVRPPLVYGDCRDVRIGPHCAPFRGMQATLRGAGLL 416          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A5A8C1D9_CAFRO (C-CAP/cofactor C-like domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C1D9_CAFRO)

HSP 1 Score: 107 bits (267), Expect = 9.200e-25
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    7 TLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKHAHTILSHANLL 333
            +L  L VE C+D+F+Y + PF+H  VR C   TVVVGA  G+ +V+LC+GCHV  A +Q+R+ N   T  SVY+   P  YGDCR V IGP  + F+     L  A LL
Sbjct:  521 SLRDLTVEGCADAFIYILRPFRHAAVRACSNTTVVVGAAAGILTVDLCEGCHVIGAARQVRIGNSVATTASVYSVRPPLVYGDCRDVRIGPHCAPFRGMQATLRGAGLL 629          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A7S1CD31_9STRA (TBCC domain-containing protein 1 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD31_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.670e-17
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    7 TLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKHAHTILSHANLLSSP 342
            TLPS+R+++C+++++Y V P  +  V GC+ CT+V+GAV    SVE C+   V  A  +LR++N  D     YT + P   GDCRG+ + P  +   H   +L H  L   P
Sbjct:   96 TLPSVRIDSCTETYVYIVAPVAYATVIGCHSCTIVLGAVAAGVSVEHCEEVKVVSACSRLRIANSVDCDFHTYTPSHPIITGDCRGLRLAPHNA---HYPRLLHHMRLAGVP 204          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A1V9ZSQ7_9STRA (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSQ7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.250e-12
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   34 CSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSF 294
            C D+F+Y + P +HV V  C  C VV+    GV +V+ C+   V      LRV NC D+ L+VYT  R  F GD RG+ IGP+  S+
Sbjct:  358 CHDTFVYVLGPVRHVSVVACSNCRVVLVPNSGVLTVDRCESVKVTAVPALLRVHNCLDSVLNVYTPRRSVFSGDNRGLQIGPYNCSY 444          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A7S3LSH7_9STRA (TBCC domain-containing protein 1 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSH7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.180e-12
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    4 GTLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKHAHTILSHANL 330
            G +  + + +C    +Y ++P  +V + GC  CTVV+G V G+ S++ CD   V    K L VSN  D+ L V    +P   GDCR + IGP+ + +    + L  A L
Sbjct:  332 GEIAKVIIASCRQCTIYLLNPCGYVRIVGCQDCTVVIGPVSGILSLDHCDLVRVIAPAKSLLVSNTVDSELCVCLKLQPILTGDCRRIRIGPYNTFYPRLLSHLREAKL 440          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: G4YJZ7_PHYSP (TBCC domain-containing protein 1 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YJZ7_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 4.420e-12
Identity = 31/97 (31.96%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    4 GTLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSF 294
            G L  + + +C DS++Y + P ++V +  C  C +++    G+ S+E C+   +   +  +RVSNC DTRL+VYT +     G+  GV++GP+ + +
Sbjct:  481 GQLSDVIIFSCQDSYIYILGPVRNVTISACKNCRIILAPNTGILSMERCENVQLTSLSGLVRVSNCLDTRLNVYTLSPIIVSGENVGVILGPYNTKY 577          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: D0MSD9_PHYIT (C-CAP/cofactor C-like domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0MSD9_PHYIT)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-11
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    4 GTLPSLRVENCSDSFLYFV----HPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSF 294
            G  P + + +C DS++Y +    +PF  +V   C  C ++     G+ S+E C+   +   +  +RVSNC DTRL+VYT +     G+  GV++GP+ + F
Sbjct:  457 GQRPDVLIFSCQDSYIYLLGPVRYPFNPIVSLSCKNCRIITAPNTGILSMERCENVQLTSLSGLIRVSNCLDTRLNVYTLSPVIVSGENVGVILGPYNAKF 557          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A485LGD4_9STRA (Aste57867_20393 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGD4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.200e-11
Identity = 31/87 (35.63%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   34 CSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSF 294
            C D+++Y + P +HV +     C +V+    G+ +V+ C+G  +      LRV+NC D+ L+V+T  R  F GD RG+ IGPF + +
Sbjct:  341 CHDAYIYVLGPLRHVSIVASSNCKLVIAPNSGIFTVDRCEGMKISGVCALLRVNNCLDSVLNVFTPRRSIFTGDNRGLHIGPFNAMY 427          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: A0A225W5D5_9STRA (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5D5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.840e-10
Identity = 35/118 (29.66%), Postives = 60/118 (50.85%), Query Frame = 1
Query:    4 GTLPSLRVENCSDSFLYFVHPFQH-----VVVRGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKHAHTILSHANLLSSP 342
            G  P + + +C DS++Y + P ++      +   C  C ++     G+ S+E C+   +   +  +RVSNC DTRL+VYT +     G+  GV++GP+ + +      LS    L SP
Sbjct:  467 GQRPDIIIFSCQDSYVYILGPVRYPFKTSTLYTSCKNCRIITAPNTGILSMERCENVQLTSLSGLVRVSNCLDTRLNVYTLSPVIISGENVGVILGPYNTKYSGLKQQLSTVPFLYSP 584          
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Match: V9FHF5_PHYPR (C-CAP/cofactor C-like domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=V9FHF5_PHYPR)

HSP 1 Score: 66.2 bits (160), Expect = 2.610e-10
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 GTLPSLRVENCSDSFLYFV----HPFQHVVV---RGCYRCTVVVGAVGGVCSVELCDGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSF 294
            G  P + + +C DS++Y +    +PF  +V+   R C  C ++     G+ S+E C+   +   +  +RVSNC DTRL+VYT +     G+  GV++GP+ + +
Sbjct: 1052 GQRPDVLIFSCQDSYIYLLGPVRYPFNSLVLVLRRACKNCRIITAPNTGILSMERCENVQLTSLSGLIRVSNCLDTRLNVYTLSPIIVSGENVGVILGPYNTKY 1155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78192.18385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A5A8DK45_CAFRO8.450e-2546.79C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A5A8C1D9_CAFRO9.200e-2546.79C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S1CD31_9STRA3.670e-1737.50TBCC domain-containing protein 1 n=1 Tax=Bicosoeci... [more]
A0A1V9ZSQ7_9STRA1.250e-1242.53C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S3LSH7_9STRA3.180e-1233.94TBCC domain-containing protein 1 n=1 Tax=Aplanochy... [more]
G4YJZ7_PHYSP4.420e-1231.96TBCC domain-containing protein 1 n=1 Tax=Phytophth... [more]
D0MSD9_PHYIT1.530e-1132.67C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A485LGD4_9STRA5.200e-1135.63Aste57867_20393 protein n=1 Tax=Aphanomyces stella... [more]
A0A225W5D5_9STRA1.840e-1029.66C-CAP/cofactor C-like domain-containing protein n=... [more]
V9FHF5_PHYPR2.610e-1031.73C-CAP/cofactor C-like domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78192contigM-pyrifera_M_contig78192:571..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog157072.XP_008862694.1
Preferred nameTBCCD1
KEGG koko:K16810
Hectar predicted targeting categoryother localisation
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
EggNOG free text desc.maintenance of Golgi location
EggNOG OGsKOG4416@1,KOG4416@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.3508952-CDS-M-pyrifera_M_contig78192:570..9121622816683.3508952-CDS-M-pyrifera_M_contig78192:570..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78192 571..912 +
1692278117.4331367-CDS-M-pyrifera_M_contig78192:570..9121692278117.4331367-CDS-M-pyrifera_M_contig78192:570..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78192 571..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78192.18385.1prot_M-pyrifera_M_contig78192.18385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78192 571..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78192.18385.1

>prot_M-pyrifera_M_contig78192.18385.1 ID=prot_M-pyrifera_M_contig78192.18385.1|Name=mRNA_M-pyrifera_M_contig78192.18385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
EGTLPSLRVENCSDSFLYFVHPFQHVVVRGCYRCTVVVGAVGGVCSVELC
DGCHVGVATKQLRVSNCGDTRLSVYTATRPAFYGDCRGVVIGPFASSFKH
AHTILSHANLLSSP
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mRNA from alignment at M-pyrifera_M_contig78192:571..912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78192.18385.1 ID=mRNA_M-pyrifera_M_contig78192.18385.1|Name=mRNA_M-pyrifera_M_contig78192.18385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig78192:571..912+ (Macrocystis pyrifera P11B4 male)
GAAGGGACTTTGCCGAGTTTGCGGGTGGAAAATTGTAGTGACTCTTTCCT CTACTTTGTGCATCCGTTCCAACACGTTGTGGTGCGTGGGTGTTATCGTT GTACTGTTGTAGTGGGTGCTGTGGGAGGGGTTTGTTCTGTGGAACTCTGT GATGGGTGTCACGTGGGAGTTGCTACAAAACAGTTGCGCGTGTCAAATTG TGGCGACACCAGGCTGAGTGTCTACACAGCAACACGCCCTGCCTTTTATG GTGATTGCAGAGGAGTAGTGATTGGTCCATTTGCTTCCTCTTTCAAACAT GCTCACACAATCCTTTCTCACGCCAACCTCCTCTCCTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78192:571..912+

>mRNA_M-pyrifera_M_contig78192.18385.1 ID=mRNA_M-pyrifera_M_contig78192.18385.1|Name=mRNA_M-pyrifera_M_contig78192.18385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig78192:571..912+ (Macrocystis pyrifera P11B4 male)
GAAGGGACTTTGCCGAGTTTGCGGGTGGAAAATTGTAGTGACTCTTTCCT
CTACTTTGTGCATCCGTTCCAACACGTTGTGGTGCGTGGGTGTTATCGTT
GTACTGTTGTAGTGGGTGCTGTGGGAGGGGTTTGTTCTGTGGAACTCTGT
GATGGGTGTCACGTGGGAGTTGCTACAAAACAGTTGCGCGTGTCAAATTG
TGGCGACACCAGGCTGAGTGTCTACACAGCAACACGCCCTGCCTTTTATG
GTGATTGCAGAGGAGTAGTGATTGGTCCATTTGCTTCCTCTTTCAAACAT
GCTCACACAATCCTTTCTCACGCCAACCTCCTCTCCTCTCCTGAAGGGAC
TTTGCCGAGTTTGCGGGTGGAAAATTGTAGTGACTCTTTCCTCTACTTTG
TGCATCCGTTCCAACACGTTGTGGTGCGTGGGTGTTATCGTTGTACTGTT
GTAGTGGGTGCTGTGGGAGGGGTTTGTTCTGTGGAACTCTGTGATGGGTG
TCACGTGGGAGTTGCTACAAAACAGTTGCGCGTGTCAAATTGTGGCGACA
CCAGGCTGAGTGTCTACACAGCAACACGCCCTGCCTTTTATGGTGATTGC
AGAGGAGTAGTGATTGGTCCATTTGCTTCCTCTTTCAAACATGCTCACAC
AATCCTTTCTCACGCCAACCTCCTCTCCTCTCCT
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