mRNA_M-pyrifera_M_contig78185.18383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig78185.18383.1
Unique NamemRNA_M-pyrifera_M_contig78185.18383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig78185.18383.1 vs. uniprot
Match: A0A7S2QVS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVS3_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.230e-7
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  163 GRDAKCSWTDDSILVIQLGWGAKILPGDFLRIKGGVIRAK-DALPAAPTMSETELLPVVVPDDLIRPGVQISSPQKIGVCDTEAL 414
            G    CSW++   + I  G+G  ILPGD +R+KGG++++  +        SET LL    P D ++P   I SP  IGVCD  AL
Sbjct: 2479 GDSPVCSWSNSLEMSITFGFGPTILPGDKIRVKGGLLQSDWEGASLYMVASETLLLD---PPDPVKPETVIISPSSIGVCDVLAL 2560
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig78185.18383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2QVS3_9STRA6.230e-740.00Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig78185contigM-pyrifera_M_contig78185:529..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog55529.EKX39530
Hectar predicted targeting categoryother localisation
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.2586377-CDS-M-pyrifera_M_contig78185:528..9541622816683.2586377-CDS-M-pyrifera_M_contig78185:528..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78185 529..954 +
1692278117.3863354-CDS-M-pyrifera_M_contig78185:528..9541692278117.3863354-CDS-M-pyrifera_M_contig78185:528..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig78185 529..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig78185.18383.1prot_M-pyrifera_M_contig78185.18383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig78185 529..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig78185.18383.1

>prot_M-pyrifera_M_contig78185.18383.1 ID=prot_M-pyrifera_M_contig78185.18383.1|Name=mRNA_M-pyrifera_M_contig78185.18383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
LSVPFESNGRSLIVRFLQPPNRAGKTAGNVVCDNLVSVFFKKTPTLSASL
VTAFGRDAKCSWTDDSILVIQLGWGAKILPGDFLRIKGGVIRAKDALPAA
PTMSETELLPVVVPDDLIRPGVQISSPQKIGVCDTEALLDAS
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mRNA from alignment at M-pyrifera_M_contig78185:529..954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig78185.18383.1 ID=mRNA_M-pyrifera_M_contig78185.18383.1|Name=mRNA_M-pyrifera_M_contig78185.18383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig78185:529..954+ (Macrocystis pyrifera P11B4 male)
TTGTCTGTTCCTTTCGAATCAAATGGGCGAAGTTTGATTGTGCGGTTCTT
GCAGCCCCCAAACCGTGCCGGGAAAACTGCTGGGAATGTGGTGTGTGACA
ACTTGGTGTCTGTGTTTTTTAAGAAGACGCCAACTTTGTCTGCTTCTTTG
GTCACTGCCTTTGGTAGGGATGCGAAATGCTCTTGGACTGATGACTCCAT
TCTCGTGATCCAGCTTGGTTGGGGTGCCAAGATTCTTCCAGGCGACTTTC
TTCGTATCAAGGGTGGAGTGATTCGTGCCAAGGATGCACTACCAGCAGCT
CCCACAATGTCTGAAACAGAACTTCTTCCAGTTGTCGTGCCAGATGATTT
GATTCGACCTGGTGTGCAAATTTCATCTCCACAAAAAATTGGTGTGTGCG
ACACAGAAGCACTTCTTGATGCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig78185:529..954+

>mRNA_M-pyrifera_M_contig78185.18383.1 ID=mRNA_M-pyrifera_M_contig78185.18383.1|Name=mRNA_M-pyrifera_M_contig78185.18383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig78185:529..954+ (Macrocystis pyrifera P11B4 male)
TTGTCTGTTCCTTTCGAATCAAATGGGCGAAGTTTGATTGTGCGGTTCTT
GCAGCCCCCAAACCGTGCCGGGAAAACTGCTGGGAATGTGGTGTGTGACA
ACTTGGTGTCTGTGTTTTTTAAGAAGACGCCAACTTTGTCTGCTTCTTTG
GTCACTGCCTTTGGTAGGGATGCGAAATGCTCTTGGACTGATGACTCCAT
TCTCGTGATCCAGCTTGGTTGGGGTGCCAAGATTCTTCCAGGCGACTTTC
TTCGTATCAAGGGTGGAGTGATTCGTGCCAAGGATGCACTACCAGCAGCT
CCCACAATGTCTGAAACAGAACTTCTTCCAGTTGTCGTGCCAGATGATTT
GATTCGACCTGGTGTGCAAATTTCATCTCCACAAAAAATTGGTGTGTGCG
ACACAGAAGCACTTCTTGATGCTTCTTTGTCTGTTCCTTTCGAATCAAAT
GGGCGAAGTTTGATTGTGCGGTTCTTGCAGCCCCCAAACCGTGCCGGGAA
AACTGCTGGGAATGTGGTGTGTGACAACTTGGTGTCTGTGTTTTTTAAGA
AGACGCCAACTTTGTCTGCTTCTTTGGTCACTGCCTTTGGTAGGGATGCG
AAATGCTCTTGGACTGATGACTCCATTCTCGTGATCCAGCTTGGTTGGGG
TGCCAAGATTCTTCCAGGCGACTTTCTTCGTATCAAGGGTGGAGTGATTC
GTGCCAAGGATGCACTACCAGCAGCTCCCACAATGTCTGAAACAGAACTT
CTTCCAGTTGTCGTGCCAGATGATTTGATTCGACCTGGTGTGCAAATTTC
ATCTCCACAAAAAATTGGTGTGTGCGACACAGAAGCACTTCTTGATGCTT
CT
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