mRNA_M-pyrifera_M_contig77695.18277.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77695.18277.1
Unique NamemRNA_M-pyrifera_M_contig77695.18277.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 126 bits (316), Expect = 1.120e-28
Identity = 84/301 (27.91%), Postives = 156/301 (51.83%), Query Frame = 1
Query:    7 EHIEYLFAAKIRPINPSVFDAPTFTLLRSLSLAAIPLKPPPSSDGAEEDLTKSSRFFGIHFAWNMLQDGNYELLSKDSKGHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAG-----PLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN 894
            E +EYLF  KI+ I  + +D  TF+L++++S+  I L      +  E +     +++G+   W ++QD     +   +   AF+ +  FL W  C ELR  +I  C+ NLK   ++  SLK+    L ++  +   G      ++  L+    L++  F  L  +K  A  AA+   + G    G +L    L G  ++   ++D    LE+IL+HS L+L   QID+ W S++V+ ++  +RD  F+W+ + V+N++   +  +++   YI  QK+P ++F+ L+  G++  + +F Y N
Sbjct:  420 EAVEYLFQ-KIKTIPYASYDTHTFSLIQAISVRGINL----CFNLPEGE----KKWYGVDIWWEIIQDETD--VPPATATEAFRFLETFLTWVYCHELRPKYIGLCMQNLKEGKSVPFSLKLLQKLLDSYPAKKEKGMEAQAQMIDLLEVNSGLMATFFEDLHRFKSKAKEAAKALADAGQT--GVDLNQQALVGKQAYIFQIKDRLDFLEYILSHSPLVLQAPQIDAFWASVIVDALTLEERDHGFLWVQN-VRNSQ-QFQAITEESTQYIFEQKVPLMDFSALTQKGFHFFEYFFRYVN 705          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: UPI000644980A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644980A)

HSP 1 Score: 108 bits (270), Expect = 1.180e-22
Identity = 78/303 (25.74%), Postives = 153/303 (50.50%), Query Frame = 1
Query:    1 QMEHIEYLFAAKIRPINPSVFDAPTFTLLRSLSLAAIPLKPPPSSDGAEEDLTKSSRFFGIHFAWNMLQDGNYELLSKDSK--GHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKP---FSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN 894
            Q++HI  +    I  +  S FD      L +LS+ +I  + P +SD     L+ + +++G+   W ++QDGN  + S D      +  ++   L    C  LR  +I +C+ NL+ F ++  SL + +S +  F ++   G +L  L+ +  +  + F  ++ YK++ +     R+    L   + L    + G   H + +Q     LE+I++ +S+MLN +Q+D LW +LV + ++  +++  F WL    KN KL  K    F ++   ++ L+K+  L+++ +  + Y + + YF+Y N
Sbjct:  561 QLDHIYDVINKTISTLKSSEFDNDLQQFLYNLSMISI--QHPDNSD-----LSANHKWYGVDLFWRLMQDGN-TVGSGDQVLCMRSLPLLVALLRLPECATLRTQYIDQCVENLRTFNSVHQSLSLIISIVELFPKKQQRG-VLESLESKHKIFDLFFKEISHYKKVVMG----RSAGLSLSSVEALNLAVIFGLFPHIQQIQGRLEFLEYIISQTSIMLNIQQVDLLWDALVRDAMTPEEKEICFAWL----KNTKLQGKERIAFPEQVVRHLFLEKMSNLDWSSMGLSSYCVFERYFFYIN 846          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: A0A0L0DFD0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFD0_THETB)

HSP 1 Score: 100 bits (249), Expect = 6.370e-20
Identity = 75/253 (29.64%), Postives = 117/253 (46.25%), Query Frame = 1
Query:  175 FGIHFAWNMLQDGNYELLSKDSKGHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPL-------------LCRLDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN 894
            +G+   W +LQD  +  L +     A  V+ + LGWQ     R  ++ RCIANL+   +I  +L++    +ST++     G +             +  L EE  LL V F  L  YK  A AAA      G  ++   +   KL G   H   +++    L  +LT S + LN EQ+D+LW+SLVV+  +  +++ AF WL+    N     + FS +   YI   K   L F  ++  GY   + +F Y N
Sbjct:  596 YGLPLLWELLQDEAH--LPESLAVQASTVLYELLGWQCGHVERAEYMERCIANLREHKSICATLQLLRKIVSTYSSGAGRGAVGGGEQVPDSMASVVAWLAEEHALLDVFFADLVHYKAAASAAAVAARASGADDDA--INRSKLFGAQGHIVNIRERLQFLNTVLTMSDVGLNHEQVDALWESLVVSPTTVLEQEEAFRWLE----NTCAVPESFSYELVRYIFDVKARDLSFVSITLQGYRFYEYFFRYIN 840          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: F4PK32_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PK32_CAVFA)

HSP 1 Score: 92.8 bits (229), Expect = 3.010e-17
Identity = 69/300 (23.00%), Postives = 133/300 (44.33%), Query Frame = 1
Query:   16 EYLFAAKIRPINPSVFDAPTFTLLRSLSLAAIPLKPPPSSDGAEEDLTKSSRFFGIHFAWNMLQDGNYEL-------LSKDSKGHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN 894
            EY     I  +  S FD      + + S  +I           +E++    + +G+   W ++QD + ++       L   SK +   +++     Q C  LR  +I   I N+K   ++  SL + ++ +  F  +     ++  L+++  +  + F  +  YK+   A       KG L     +     CG   H   +Q  F  LEF+L+ SS+MLN +Q+D +W + V + ++E + +  F WL S  + A      F +    Y+ ++K+ +L++  L+   Y + + YF+Y N
Sbjct:  564 EYFNKTLINSLKASDFDNELLNFIFNFSRISIQ---------HQENILTLKKCYGVDIFWRLIQDNDSQIADQYTQTLCTKSKSYLISLLK----LQECIGLRTQYIDLAIENIKNNVSVVQSLSLIVNIVELFVAK-KLRSVIESLEQKSKIFDIFFKEMAAYKKTVSAKV-----KGTLH-ATPVNQTVFCGLFPHLYQIQARFDFLEFLLSQSSIMLNVQQVDVMWDAFVTHHLTEEESEIFFSWLKS-TRIAGRDRVAFHENVVKYLFIEKMSSLDWTSLTPTSYAVFERYFFYIN 842          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: A0A8J4UPR8_9MYCE (USP domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UPR8_9MYCE)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-11
Identity = 66/315 (20.95%), Postives = 136/315 (43.17%), Query Frame = 1
Query:    7 EHIEYLFAAKIRPIN---PSVFDAPTFTLLRSLSLAAIPLKPPPSSDGAEEDLTKSSRFFGIHFAWNM----LQDGNYELLSKDSKGHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQ----------ERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLG--HKPFSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN 894
            E +EYL+ +  + IN    S FD    + L + +  +I          +E     + + FG+   W +     +D +   L +     +       L  Q C  +R  ++   I NLK  T I  SL + ++ +    Q+         L+++  +  + F  ++ YK++++  ++             ++   +   +  +    G   H   +      LEFIL+ S+ MLN +Q+D LW SLV N ++  +R+  F+WL    KN K+       S+    ++ L+K+  +++  L  + +++ + +F++ N
Sbjct:  655 ESVEYLYNSICKTINILRVSEFDNEFLSFLFNFATLSI--------QHSENFSGSNKKLFGLEIFWRLSTQQCEDASERELYQSLCIRSRNQFISLLKLQECTSMRTYYLECAIENLKNNTAIVESLDLIINIIDPKKQKSYIEI----LEQKYKIFDLFFKEISNYKKVSLEKSKLNIGNSXXXXXXADQNHQQLDSDFNNTVFVGQFPHLTQIHVRIQFLEFILSQSNFMLNIQQVDILWDSLVTNALTIEERESCFLWL----KNTKISGQRSTLSESVVKHLFLEKMSNMDWYHLGPSSFSVYERFFFFLN 953          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: X6MR44_RETFI (Ubiquitin carboxyl-terminal hydrolase family protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MR44_RETFI)

HSP 1 Score: 70.9 bits (172), Expect = 6.780e-10
Identity = 59/236 (25.00%), Postives = 109/236 (46.19%), Query Frame = 1
Query:  181 IHFAWNMLQDGNYELLSKDSK--GHAFQVVRDFLGWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAG-----------PLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQE-RTEKGDLEEGQE----LGSLKLCGNA--SHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCMYILLQKIPT 828
            I   W ++QD +    S D K    A  ++++ L      ELRE  + RCI NL    ++ +SL+V    L  +A   S+             ++ +L+ +  ++   F  +  +K  A A A+E RT   + E   +    +  +K  G+   S+ + +++    L+FIL  S+L L  ++ID +W S+VVN ++  +R+ AF W   ++    L  +   D    ++ + K  T
Sbjct:  480 IKILWKLVQDES----SVDDKLVNEAKNLMKEVLTTYFARELREPLLKRCIDNLVEHKSVIISLQVLEKVLQIYATPSSSPMPPMMDDLHRWEIIAKLNTQYAMMKHFFADIEFFKEKASAKAKEIRTAYNEKELSAKYFAAVNQMKSVGSPRFSYLDEVKERLDFLDFILGFSNLRLEKQEIDIIWNSMVVNCLTPDEREEAFKWFQKMMTG--LRFRSLGDDLPQHLFINKFLT 709          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: A0A078B695_STYLE (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B695_STYLE)

HSP 1 Score: 63.2 bits (152), Expect = 2.410e-7
Identity = 56/252 (22.22%), Postives = 104/252 (41.27%), Query Frame = 1
Query:  181 IHFAWNMLQDGNYELLSKDSKGHAFQVVRDFL-GWQLCFELRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCR-----------LDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCMYILLQKIPTLE--FNILSFAGYNLVQCYFYYAN 894
            I   W ++   N E L K    +A   + D L  W+   +L   +I R I N+K    I    +     + +  + G    L+ +           L+++  L+ + F   T Y   A    + + +     + + +    L     H E +      L +++THS++ L  EQ+  LW  LVV++++  D D  + WL  + K+   G +    +  +    +KI   E  F  L++ G+N +Q +F   N
Sbjct:  629 IELFWKIITS-NLETLDKQIMIYAANSINDILKNWENAQKLP--YIIRVIENIKNTLIIKSYPEDDPDDIFS-VENGKTDHLIPQYFKSRMDFIDWLEDDHKLMQLFFDNFTHYLFKARRGYRSKMDNDQNFDKKPIFDQTLAEVFIHSEQLSQRMEFLSYVITHSNIYLEKEQLGILWDELVVHSLTNQDSDMIYKWLQGICKSQYEGIQVVEIESLIQFFKEKIANQERTFQHLTYEGFNCIQSFFVLIN 876          
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Match: A0A7E5W283_TRINI (Ubiquitinyl hydrolase 1 n=12 Tax=Noctuidae TaxID=7100 RepID=A0A7E5W283_TRINI)

HSP 1 Score: 55.8 bits (133), Expect = 5.820e-5
Identity = 65/249 (26.10%), Postives = 100/249 (40.16%), Query Frame = 1
Query:  178 GIHFAWNMLQDGNYELLSKDSKGHAFQVVRDFLGWQLCFE----LRELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCRLDEEQLLLSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQDFFGLLEFILTHSS-------LMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLVKNAKLGHKPFSDKDCM------YILLQKIPTLEFNILSFAGYNLVQ 873
            G    W++LQDGN E L +   G A +  +      LCF     +R  FI  C+ NL    ++++SL++     S+F Q       L  +D  Q    V+  A  E   M +     R            G  +  G A H+  + +    L F+    S         L  EQ++ LWQ LVV   SE   D  + WL        L H    D+  +      ++ ++K+PTL+   +S  G +L Q
Sbjct:  747 GNTLLWDLLQDGNIEQLGE---GLALEAEKALCAL-LCFSTDKFIRIKFIEGCLDNLANHRSVAVSLRLLPKLFSSFQQ-------LRGMDMHQ----VVMWAERERGMMRLFLEDLR---------HYTGVARAPGEAPHYAHITELTVRLHFLTAIFSPVGSPQHFRLTVEQVEELWQCLVVRGSSEC-ADCLYSWL--------LSHTKSPDQHALGLDALRFLYVEKMPTLDPETISIMGLSLYQ 962          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77695.18277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
L8GPA8_ACACA1.120e-2827.91Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
UPI000644980A1.180e-2225.74hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0L0DFD0_THETB6.370e-2029.64Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
F4PK32_CAVFA3.010e-1723.00Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A8J4UPR8_9MYCE1.120e-1120.95USP domain-containing protein n=1 Tax=Polysphondyl... [more]
X6MR44_RETFI6.780e-1025.00Ubiquitin carboxyl-terminal hydrolase family prote... [more]
A0A078B695_STYLE2.410e-722.22Ubiquitin carboxyl-terminal hydrolase family prote... [more]
A0A7E5W283_TRINI5.820e-526.10Ubiquitinyl hydrolase 1 n=12 Tax=Noctuidae TaxID=7... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77695contigM-pyrifera_M_contig77695:38..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue4.7e-19
Seed eggNOG ortholog529818.AMSG_12028T0
KEGG koko:K11853
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size894
Cds size891
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.862818-CDS-M-pyrifera_M_contig77695:37..9281622816677.862818-CDS-M-pyrifera_M_contig77695:37..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77695 38..928 -
1692278114.2695289-CDS-M-pyrifera_M_contig77695:37..9281692278114.2695289-CDS-M-pyrifera_M_contig77695:37..928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77695 38..928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.8736355-UTR-M-pyrifera_M_contig77695:928..9311622816677.8736355-UTR-M-pyrifera_M_contig77695:928..931Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77695 929..931 -
1692278114.2818172-UTR-M-pyrifera_M_contig77695:928..9311692278114.2818172-UTR-M-pyrifera_M_contig77695:928..931Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig77695 929..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77695.18277.1prot_M-pyrifera_M_contig77695.18277.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77695 38..928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77695.18277.1

>prot_M-pyrifera_M_contig77695.18277.1 ID=prot_M-pyrifera_M_contig77695.18277.1|Name=mRNA_M-pyrifera_M_contig77695.18277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=297bp
MEHIEYLFAAKIRPINPSVFDAPTFTLLRSLSLAAIPLKPPPSSDGAEED
LTKSSRFFGIHFAWNMLQDGNYELLSKDSKGHAFQVVRDFLGWQLCFELR
ELFITRCIANLKRFTTISMSLKVAMSALSTFAQEGSAGPLLCRLDEEQLL
LSVIFHALTEYKRMAVAAAQERTEKGDLEEGQELGSLKLCGNASHHETMQ
DFFGLLEFILTHSSLMLNTEQIDSLWQSLVVNTISEADRDRAFVWLDSLV
KNAKLGHKPFSDKDCMYILLQKIPTLEFNILSFAGYNLVQCYFYYAN
back to top

mRNA from alignment at M-pyrifera_M_contig77695:38..931-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77695.18277.1 ID=mRNA_M-pyrifera_M_contig77695.18277.1|Name=mRNA_M-pyrifera_M_contig77695.18277.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig77695:38..931- (Macrocystis pyrifera P11B4 male)
CAGATGGAGCACATTGAGTATCTGTTCGCAGCAAAGATCCGGCCGATCAA CCCCTCCGTATTTGATGCGCCGACTTTCACCTTGCTCCGATCCTTGAGCC TGGCAGCGATCCCATTGAAGCCACCTCCGAGCAGTGACGGTGCAGAAGAG GATCTCACCAAGAGTTCGAGATTCTTTGGCATCCACTTCGCTTGGAATAT GCTCCAAGATGGAAACTATGAGCTGCTGTCGAAAGACAGCAAGGGGCACG CCTTCCAGGTTGTTCGAGATTTCCTCGGCTGGCAGCTTTGCTTTGAGCTC AGAGAGCTCTTCATTACGAGGTGCATCGCCAACTTGAAGCGGTTCACCAC CATTTCTATGAGCCTCAAGGTTGCCATGTCTGCACTGAGCACCTTCGCCC AAGAAGGGTCTGCAGGCCCCCTTCTCTGCAGACTTGACGAAGAGCAGCTG CTTCTCTCTGTCATTTTCCATGCTCTTACAGAGTACAAGAGGATGGCTGT GGCCGCCGCACAGGAGAGAACAGAGAAAGGAGACCTTGAGGAAGGCCAGG AGCTCGGGAGTCTGAAGCTGTGTGGGAATGCTTCACACCACGAGACCATG CAGGACTTTTTTGGTCTCCTCGAGTTCATCCTGACACACTCGTCTCTTAT GCTGAACACTGAGCAAATAGACTCTCTGTGGCAATCTCTGGTGGTAAACA CCATCTCTGAGGCAGACCGAGATCGAGCATTTGTGTGGCTGGATTCACTC GTGAAGAATGCCAAGCTCGGCCATAAGCCGTTCTCAGACAAGGACTGCAT GTACATACTGCTTCAGAAGATTCCAACTCTTGAGTTCAACATTCTGTCCT TCGCAGGATACAACTTGGTGCAGTGCTACTTCTACTACGCCAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig77695:38..931-

>mRNA_M-pyrifera_M_contig77695.18277.1 ID=mRNA_M-pyrifera_M_contig77695.18277.1|Name=mRNA_M-pyrifera_M_contig77695.18277.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1782bp|location=Sequence derived from alignment at M-pyrifera_M_contig77695:38..931- (Macrocystis pyrifera P11B4 male)
ATGGAGCACATTGAGTATCTGTTCGCAGCAAAGATCCGGCCGATCAACCC
CTCCGTATTTGATGCGCCGACTTTCACCTTGCTCCGATCCTTGAGCCTGG
CAGCGATCCCATTGAAGCCACCTCCGAGCAGTGACGGTGCAGAAGAGGAT
CTCACCAAGAGTTCGAGATTCTTTGGCATCCACTTCGCTTGGAATATGCT
CCAAGATGGAAACTATGAGCTGCTGTCGAAAGACAGCAAGGGGCACGCCT
TCCAGGTTGTTCGAGATTTCCTCGGCTGGCAGCTTTGCTTTGAGCTCAGA
GAGCTCTTCATTACGAGGTGCATCGCCAACTTGAAGCGGTTCACCACCAT
TTCTATGAGCCTCAAGGTTGCCATGTCTGCACTGAGCACCTTCGCCCAAG
AAGGGTCTGCAGGCCCCCTTCTCTGCAGACTTGACGAAGAGCAGCTGCTT
CTCTCTGTCATTTTCCATGCTCTTACAGAGTACAAGAGGATGGCTGTGGC
CGCCGCACAGGAGAGAACAGAGAAAGGAGACCTTGAGGAAGGCCAGGAGC
TCGGGAGTCTGAAGCTGTGTGGGAATGCTTCACACCACGAGACCATGCAG
GACTTTTTTGGTCTCCTCGAGTTCATCCTGACACACTCGTCTCTTATGCT
GAACACTGAGCAAATAGACTCTCTGTGGCAATCTCTGGTGGTAAACACCA
TCTCTGAGGCAGACCGAGATCGAGCATTTGTGTGGCTGGATTCACTCGTG
AAGAATGCCAAGCTCGGCCATAAGCCGTTCTCAGACAAGGACTGCATGTA
CATACTGCTTCAGAAGATTCCAACTCTTGAGTTCAACATTCTGTCCTTCG
CAGGATACAACTTGGTGCAGTGCTACTTCTACTACGCCAACATGGAGCAC
ATTGAGTATCTGTTCGCAGCAAAGATCCGGCCGATCAACCCCTCCGTATT
TGATGCGCCGACTTTCACCTTGCTCCGATCCTTGAGCCTGGCAGCGATCC
CATTGAAGCCACCTCCGAGCAGTGACGGTGCAGAAGAGGATCTCACCAAG
AGTTCGAGATTCTTTGGCATCCACTTCGCTTGGAATATGCTCCAAGATGG
AAACTATGAGCTGCTGTCGAAAGACAGCAAGGGGCACGCCTTCCAGGTTG
TTCGAGATTTCCTCGGCTGGCAGCTTTGCTTTGAGCTCAGAGAGCTCTTC
ATTACGAGGTGCATCGCCAACTTGAAGCGGTTCACCACCATTTCTATGAG
CCTCAAGGTTGCCATGTCTGCACTGAGCACCTTCGCCCAAGAAGGGTCTG
CAGGCCCCCTTCTCTGCAGACTTGACGAAGAGCAGCTGCTTCTCTCTGTC
ATTTTCCATGCTCTTACAGAGTACAAGAGGATGGCTGTGGCCGCCGCACA
GGAGAGAACAGAGAAAGGAGACCTTGAGGAAGGCCAGGAGCTCGGGAGTC
TGAAGCTGTGTGGGAATGCTTCACACCACGAGACCATGCAGGACTTTTTT
GGTCTCCTCGAGTTCATCCTGACACACTCGTCTCTTATGCTGAACACTGA
GCAAATAGACTCTCTGTGGCAATCTCTGGTGGTAAACACCATCTCTGAGG
CAGACCGAGATCGAGCATTTGTGTGGCTGGATTCACTCGTGAAGAATGCC
AAGCTCGGCCATAAGCCGTTCTCAGACAAGGACTGCATGTACATACTGCT
TCAGAAGATTCCAACTCTTGAGTTCAACATTCTGTCCTTCGCAGGATACA
ACTTGGTGCAGTGCTACTTCTACTACGCCAAC
back to top