mRNA_M-pyrifera_M_contig7739.18222.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7739.18222.1 vs. uniprot
Match: D8LGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI) HSP 1 Score: 396 bits (1018), Expect = 5.310e-118 Identity = 386/829 (46.56%), Postives = 447/829 (53.92%), Query Frame = 1
Query: 1 CRSVAVSDAILVAQSAFAGGEFQPEAFPRCVCLLLEAFEGGDNAVRLCTARLIERYRPHLGGSILSVEVAQRVSQLLG-HDDPTTRELCLDVLAAVSFAVGSGGLPRSILLDVGRSLRSPSLAERQAAARAYASCLCVQRTSRDPFAPSLTPRSLGDMAALSSALLPTLTPTLGWGGDGSVSGLCNGGEGGGSGEDXXXXXXLGGCAGVEALLEGVLSKVTGNLPSTELWESLKGFLFEIDPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPILRTIAVDLILALMHVEAVARVTAATLTAVTDANNSNTDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPPSPGRGGVWRILDAL-AASEDDGEAAELLAVLGAPALADAVLDAETLAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNDGDASQRVDALSALSKVATEAALSAPPSLVLLSRRGNSGXXXXXXXSAAQLGAKLMLPQLRELAAAHPCPRRKVAHAAARRLAALPPGSPLAVDLAVLVSHVLQPGGDGGLGEAGGEAGGG-------------GKLDGMLRELLFGRRFSEENPKAAVGVAVALMRLHRGSLARQSSLSSALVRAMGMESEKRVG-----------------------------GGGSXXXXXXGVGDETSARGPLVNDPWFQLVLCRECMLHGFYQAAEAGLGRVRDRGXXXXXXXGTAV--ASDTMWVWTEVLGKVSAAEAVFGSSSDPV 2349
CRSVAVSDAIL AQS F GGEFQPEAFPRCVCLLLEAFEGGDNA++L ARL+ER RP+ GG++L+VEVAQRVSQ+LG HDDPTTRELCLDVL+AV+F G+GGLPR ILLD+GRSLRSP LA V+G+LPSTELWESLK FL + D + XXXXXXX XXXXXXXXXXXXXXXX +P LR +AVD ++L+HVEAV R A A +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A PP+PGR VWR+LDA+ AASE GE AELL+VLGAPA+A AVL+AE +AG+ ++D A++R AL+AL++ A + LS+ P L LLS RG SG AA GA+L+LPQLR LAA H PR++VA A AR L +PP S LAV+LAVLVSHV++ G G + G G L+ +L ELLFGRRF ++NPKAAVG+AVALMR HRGSL+RQS+LSSALV AMG GG+ E P+V DPWFQLVLCRECMLHGF++AA AGL R+RD G G AV ASDT+W WTEVLGKVSAAEA FG S DPV
Sbjct: 8 CRSVAVSDAILAAQSTFEGGEFQPEAFPRCVCLLLEAFEGGDNAIKLSAARLLERCRPYFGGNVLAVEVAQRVSQVLGYHDDPTTRELCLDVLSAVTF--GTGGLPRGILLDIGRSLRSPFLA------------------------------------------------------------------------------------------------VSGDLPSTELWESLKVFLLDEDTSXXXXXXXXXETQLNVTALVDLVLHRLRSNXXXXXXXXXXXXXXXXPGAS------------------NPALRAMAVDFFVSLIHVEAVERSKFAM--AAAEAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAAPRATPPTPGRSSVWRLLDAVSAASEAHGEKAELLSVLGAPAVAVAVLEAEAVAGAKSAGKMASTLSSSSVLLLACASSLVSYSGAAFRETPFYPADGG-----------ISDS-AARRDKALAALAEFAADGVLSSLPVLRLLSSRGISGGGP-----AAAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAG-------EGDDKGSXXXXXXXXXXGERLGDLERVLWELLFGRRFCDDNPKAAVGIAVALMRHHRGSLSRQSTLSSALVGAMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGAEAGKRCPA--EPEGTDPIVLDPWFQLVLCRECMLHGFFEAAGAGLRRLRDGGRRKG---GGAVLPASDTVWAWTEVLGKVSAAEAFFGGSPDPV 689
BLAST of mRNA_M-pyrifera_M_contig7739.18222.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE) HSP 1 Score: 370 bits (951), Expect = 2.930e-108 Identity = 377/859 (43.89%), Postives = 436/859 (50.76%), Query Frame = 1
Query: 70 PEAFPRCVCLLLEAFEGGDNAVRLCTARLIERYRPHLGGSILSVEVAQRVSQLLG-HDDPTTRELCLDVLAAVSFAVGSGGLPRSILLDVGRSLRSPSLAERQAAARAYASCLCVQRTSRDPFA----------------PSLTPRSLGDMAALSSALLPTLTPTLGWGGDGSVSGLCNGGEGGGSGEDXXXXXXLGGCAGVEALLEGVLSKVTGNLPSTELWESLKGFLFEIDPATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPILRTIAVDLILALMHVEAVARVTAATLTAVTDANNSNTDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALPPSPGRGGVWRILDALA-ASEDDGEAAELLAVLGAPALADAVLDAETLAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV---------------------------------------------------NDG----DASQRVDALSALSKVATEAALSAPPSLVLLSRRGNSGXXXXXXXSAAQLGAKLMLPQLRELAAAHPCPRRKVAHAAARRLAALPPGSPLAVDLAVLVSHVLQPGGDGGLGEAGGEAGGGGKLDGMLRELLFGRRFSEENPKAAVGVAVALMRLHRGSLARQSSLSSALVRAMGMESEKRV---------------GGGGSXXXXXXGVGD---------ETSARGPLVNDPWFQLVLCRECMLHGFYQAAEAGLGRVRDRGXXXXXXXGTAV--ASDTMWVWTEVLGKVSAAEAVFGSSSDPV 2349
PEAFPRCVCLLLEAFEGGDNA++L ARL+ER RP+ GG+IL+VEVAQRVSQ+LG HDDPTTRELCLDVL+AV+F G+GGLPR ILLD+GRSLRSP LAER+AAARAYASC+C R+ P+LTPR+L +M+ALSSALLP L+ GGD VSG GGG G + VE LLE VL KV+ PA A XXXXXXXX LR +AVD ++L+H+EAV R A A A XXXXXXXXXXXXXXXXXXXXXXXXXX A PP+PGR VWR+LDA + ASE GE AELL+VLGAPALA AVL+AE +AG+ XXXXXXXXXXXX DG A++R AL+AL++ A E LS+ P L LLS RG G +A GA+L+LPQLR LAA H PR++VA A AR L +PP S LAV+LAVLVSHV++ G G G AG GG+ G L KAAVG+AVALMR HRGSL+RQS+LSSALV AMG GG G G G E P+V D W+QLVLCRECMLHGF++AA AGL R+R+ G G AV ASDT+W WTEVLGKVSAAEA FG S DPV
Sbjct: 3 PEAFPRCVCLLLEAFEGGDNAIKLSAARLLERCRPYFGGNILAVEVAQRVSQVLGYHDDPTTRELCLDVLSAVTF--GTGGLPRGILLDIGRSLRSPFLAERRAAARAYASCMCAHRSXXXXXXXXXXXXXXXXXXXXXXPALTPRTLEEMSALSSALLPLLSCE---GGDARVSGW----RGGGGGREGGGFFPR----DVEELLEAVLWKVSAA------------------PAPAAXXXXXXXXA----------------------------------------------------------LRAMAVDFFVSLIHMEAVERSKFAMAAA----------EAAVKXXXXXXXXXXXXXXXXXXXXXXXXXXTSGGASASTAKAAPRATPPTPGRSSVWRLLDAFSVASEAHGEKAELLSVLGAPALAVAVLEAEAVAGAKSAGKMAAAHGFGDAAGGGXXXXXXXXXXXXGRVGEEAHALARIRFPLATAAVEAFRRLCTSPXXXXXXXXXXXXXXXXXXXXXXACASSLVSYSVAAFRETPFYPADGGVSDSAARREKALAALAEFAAEGVLSSLPVLRLLSSRGIGGGGP----AAVAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAGEVDDKGGGGEGAGTGGEKLGDLE-------------KAAVGIAVALMRHHRGSLSRQSTLSSALVGAMGXXXXXXXXXXXXXXXXXXXXXXGGEGDPGTAGVGCGGAEAGKRCPAEPEGTDPIVLDTWYQLVLCRECMLHGFFEAAGAGLRRLREGGRRKG---GGAVLPASDTVWAWTEVLGKVSAAEAFFGGSPDPV 742 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7739.18222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7739.18222.1 >prot_M-pyrifera_M_contig7739.18222.1 ID=prot_M-pyrifera_M_contig7739.18222.1|Name=mRNA_M-pyrifera_M_contig7739.18222.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=783bp CRSVAVSDAILVAQSAFAGGEFQPEAFPRCVCLLLEAFEGGDNAVRLCTAback to top mRNA from alignment at M-pyrifera_M_contig7739:1416..11027+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7739.18222.1 ID=mRNA_M-pyrifera_M_contig7739.18222.1|Name=mRNA_M-pyrifera_M_contig7739.18222.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9612bp|location=Sequence derived from alignment at M-pyrifera_M_contig7739:1416..11027+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7739:1416..11027+ >mRNA_M-pyrifera_M_contig7739.18222.1 ID=mRNA_M-pyrifera_M_contig7739.18222.1|Name=mRNA_M-pyrifera_M_contig7739.18222.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4698bp|location=Sequence derived from alignment at M-pyrifera_M_contig7739:1416..11027+ (Macrocystis pyrifera P11B4 male)back to top |