mRNA_M-pyrifera_M_contig77279.18205.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77279.18205.1
Unique NamemRNA_M-pyrifera_M_contig77279.18205.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77279.18205.1 vs. uniprot
Match: A0A3D4UPI9_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UPI9_9BACT)

HSP 1 Score: 428 bits (1100), Expect = 1.730e-139
Identity = 215/335 (64.18%), Postives = 246/335 (73.43%), Query Frame = 1 
Query:    1 YDTQDGALVALYLPTIRRAIEYIDDSFDNRVEIGATLSLFDFSSDDXXXXDNVIGSAGSSRFTIPWSVYVEGLRSQSLRDDPDFANALPSSSVNVLYNGSASSTVETEVVVTMAQLRAIFGDTVVPQGQAVSITFNSSVGWNFFGCGVDPVGSQSSLIDVAVHEFTHAMGFTSGIAEGGNNSSNQIQGLDIARFRASNLPFSLATFGSNPRLGESFTAEPHFYSSFPNTFTTTLESGDDNQPSHLVYIQDFDDKLGVMDPVLTNGETHCPFFYSNADIQPLDDMGWRPVIGNDFQDCNSNGIPDFIDIDNGTSQDFDNDGIPDSCETFVAGSASP 1005
            YD  D   VA YLP IR A EY+D  FDNRVEIGAT++L  F +D       VIGSAGS+R+TIPW VYVEGLR QS+R+D  FA  LP S++ V YNGS+S+T ET++ VT AQLRA+FGD VVPQGQAVSITFNS+  WNF GC ++P   Q SLIDVAVHE  H+MGFTSGIA GGNNS +QI+GLD+ARFR S LPF+ A F +N R+GE FTAEPHFYSSFP    T LESGD +QPSHL YI D DDKLGVMDPV+  G T CP F S  DIQPLDDMGWRP+  +   DCN NG PD +DI  GTS D DND IPD CE F  G+  P
Sbjct:  130 YDITDPLFVAFYLPVIRSAAEYLDRQFDNRVEIGATMALGTFDND-------VIGSAGSTRYTIPWPVYVEGLRQQSVREDARFAAQLPESTLAVNYNGSSSATSETQIRVTAAQLRAVFGDNVVPQGQAVSITFNSNTSWNFLGCNLEPGNDQQSLIDVAVHELVHSMGFTSGIASGGNNSGDQIEGLDVARFRVSQLPFTNAQFTNNARIGEQFTAEPHFYSSFPTGILTNLESGDGHQPSHLTYISDSDDKLGVMDPVIVRGTTRCPDFLSLDDIQPLDDMGWRPIGTHGLNDCNGNGHPDIVDITIGTSLDVDNDSIPDECEFFSVGAGDP 457
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BLAST of mRNA_M-pyrifera_M_contig77279.18205.1 vs. uniprot
Match: A0A3M8FXT0_9BACT (Uncharacterized protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FXT0_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.660e-13
Identity = 83/287 (28.92%), Postives = 129/287 (44.95%), Query Frame = 1 
Query:   67 IDDSFDNRVEIGATLSLFDFSSDDXXXXDNVIGSAGSSRFTIPWSVYVEGLRSQSLRDDPDFANALPS-SSVNVLYNGSASS-TVETEVVVTMAQLRAIFGDTVVPQGQAVSITFNSSVGWNFFGCGVDPV----GSQSSLIDVAVHEFTHAMGFTSGIAEGGNNSSNQIQGLDIARFRASN-----LPFSLATFGSNPRLGESFTAEPHFYSSFPNTFTTTLESGDDNQPSHLVYIQDFD--DKLGVMDPVLTNGETHCPFF----YSNADIQPLDDMGWRPVIGN 876
            I+ +FD+   I  +LS              V+G+ GS+  +  W     GL +  +  D    + LP+ +++ V YN S++S T E  V  T A  ++  G      G   S+T+N +  W+F     DP     GS  S +DV +HE  HAMGFTS +    +  +N I+ +DI RF+ ++      P + A F + PR  +         S   +     +  G  +Q SH     +      +G+MDP    G   C FF    YS+ADI   D +G+  V+GN
Sbjct:  121 IESTFDDPTTIVVSLSFASLGG-------GVLGATGSNYVSDSWGDSRTGLIN-GMDGDDSIQSFLPTGTTIPVRYNASSTSITNENRVFWTRAAYKSTVGSL---GGSDASMTYNQNFNWDF-----DPTNGISGSSFSFVDVVIHEVGHAMGFTSAV----DFRNNDIETIDIYRFQRTDGSNDYNPDTTAEFQTTPRTVDFNNPNDDANSDIISN-EYRMSDGSPSQASHFREQGNCSPTSNIGIMDPSFNGG---CTFFSRGYYSDADINMFDAIGYDFVVGN 383
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77279.18205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D4UPI9_9BACT1.730e-13964.18Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
A0A3M8FXT0_9BACT1.660e-1328.92Uncharacterized protein n=1 Tax=Phycisphaera sp. T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77279contigM-pyrifera_M_contig77279:2..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog1121948.AUAC01000008_gene796
KEGG koko:K01406
KEGG Pathwayko01503,map01503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haemolysin-type calcium-binding repeat (2 copies)
EggNOG OGs1MU7T@1224,2TRVY@28211,43ZJT@69657,COG2931@1,COG2931@2
EC3.4.24.40
COG Functional cat.Q
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size1005
Cds size1005
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.7402117-CDS-M-pyrifera_M_contig77279:1..10061622816673.7402117-CDS-M-pyrifera_M_contig77279:1..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77279 2..1006 +
1692278111.7819276-CDS-M-pyrifera_M_contig77279:1..10061692278111.7819276-CDS-M-pyrifera_M_contig77279:1..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77279 2..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77279.18205.1prot_M-pyrifera_M_contig77279.18205.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77279 2..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77279.18205.1

>prot_M-pyrifera_M_contig77279.18205.1 ID=prot_M-pyrifera_M_contig77279.18205.1|Name=mRNA_M-pyrifera_M_contig77279.18205.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=335bp
YDTQDGALVALYLPTIRRAIEYIDDSFDNRVEIGATLSLFDFSSDDDDDN
DNVIGSAGSSRFTIPWSVYVEGLRSQSLRDDPDFANALPSSSVNVLYNGS
ASSTVETEVVVTMAQLRAIFGDTVVPQGQAVSITFNSSVGWNFFGCGVDP
VGSQSSLIDVAVHEFTHAMGFTSGIAEGGNNSSNQIQGLDIARFRASNLP
FSLATFGSNPRLGESFTAEPHFYSSFPNTFTTTLESGDDNQPSHLVYIQD
FDDKLGVMDPVLTNGETHCPFFYSNADIQPLDDMGWRPVIGNDFQDCNSN
GIPDFIDIDNGTSQDFDNDGIPDSCETFVAGSASP
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mRNA from alignment at M-pyrifera_M_contig77279:2..1006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77279.18205.1 ID=mRNA_M-pyrifera_M_contig77279.18205.1|Name=mRNA_M-pyrifera_M_contig77279.18205.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at M-pyrifera_M_contig77279:2..1006+ (Macrocystis pyrifera P11B4 male)
TATGACACACAGGACGGCGCGCTCGTCGCACTCTATCTCCCGACTATTCG
TCGTGCGATCGAGTACATCGACGACTCGTTCGACAATCGCGTAGAGATTG
GCGCAACGCTCTCGCTCTTCGATTTCAGCTCAGATGACGATGACGATAAC
GATAATGTCATCGGCTCTGCAGGATCATCTCGCTTCACGATCCCCTGGTC
TGTGTATGTCGAGGGGCTGCGCAGTCAGTCGCTTCGCGATGACCCGGACT
TTGCGAATGCGCTTCCCAGCTCGTCTGTGAATGTCCTCTACAACGGATCC
GCTTCGAGTACTGTCGAGACAGAAGTCGTCGTCACGATGGCGCAGCTCCG
AGCTATCTTCGGAGATACCGTCGTTCCCCAAGGACAAGCGGTCTCGATCA
CTTTCAACTCATCCGTCGGCTGGAACTTCTTCGGTTGTGGCGTTGATCCT
GTTGGATCACAGAGCTCGCTGATCGATGTCGCCGTGCACGAGTTCACGCA
CGCGATGGGCTTCACGAGTGGAATCGCAGAGGGTGGGAACAACTCGAGTA
ATCAGATTCAGGGACTCGATATCGCACGCTTCCGTGCATCGAACTTGCCA
TTCTCTCTCGCGACATTCGGATCGAATCCCCGTCTCGGGGAGAGCTTTAC
TGCAGAGCCGCACTTCTACAGCAGTTTCCCGAACACGTTCACAACGACGC
TCGAGTCGGGTGATGACAATCAGCCCTCTCATCTCGTCTATATCCAAGAC
TTCGACGACAAGCTGGGCGTGATGGATCCCGTTCTCACGAACGGGGAGAC
CCATTGCCCGTTCTTCTACTCGAACGCGGATATCCAGCCGCTCGATGATA
TGGGCTGGCGCCCGGTCATCGGGAACGATTTCCAAGACTGCAACAGCAAC
GGGATCCCGGACTTCATCGATATCGACAACGGCACTTCCCAAGACTTCGA
CAACGACGGCATCCCTGACAGCTGCGAGACATTCGTTGCAGGGAGTGCGA
GTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77279:2..1006+

>mRNA_M-pyrifera_M_contig77279.18205.1 ID=mRNA_M-pyrifera_M_contig77279.18205.1|Name=mRNA_M-pyrifera_M_contig77279.18205.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2010bp|location=Sequence derived from alignment at M-pyrifera_M_contig77279:2..1006+ (Macrocystis pyrifera P11B4 male)
TATGACACACAGGACGGCGCGCTCGTCGCACTCTATCTCCCGACTATTCG
TCGTGCGATCGAGTACATCGACGACTCGTTCGACAATCGCGTAGAGATTG
GCGCAACGCTCTCGCTCTTCGATTTCAGCTCAGATGACGATGACGATAAC
GATAATGTCATCGGCTCTGCAGGATCATCTCGCTTCACGATCCCCTGGTC
TGTGTATGTCGAGGGGCTGCGCAGTCAGTCGCTTCGCGATGACCCGGACT
TTGCGAATGCGCTTCCCAGCTCGTCTGTGAATGTCCTCTACAACGGATCC
GCTTCGAGTACTGTCGAGACAGAAGTCGTCGTCACGATGGCGCAGCTCCG
AGCTATCTTCGGAGATACCGTCGTTCCCCAAGGACAAGCGGTCTCGATCA
CTTTCAACTCATCCGTCGGCTGGAACTTCTTCGGTTGTGGCGTTGATCCT
GTTGGATCACAGAGCTCGCTGATCGATGTCGCCGTGCACGAGTTCACGCA
CGCGATGGGCTTCACGAGTGGAATCGCAGAGGGTGGGAACAACTCGAGTA
ATCAGATTCAGGGACTCGATATCGCACGCTTCCGTGCATCGAACTTGCCA
TTCTCTCTCGCGACATTCGGATCGAATCCCCGTCTCGGGGAGAGCTTTAC
TGCAGAGCCGCACTTCTACAGCAGTTTCCCGAACACGTTCACAACGACGC
TCGAGTCGGGTGATGACAATCAGCCCTCTCATCTCGTCTATATCCAAGAC
TTCGACGACAAGCTGGGCGTGATGGATCCCGTTCTCACGAACGGGGAGAC
CCATTGCCCGTTCTTCTACTCGAACGCGGATATCCAGCCGCTCGATGATA
TGGGCTGGCGCCCGGTCATCGGGAACGATTTCCAAGACTGCAACAGCAAC
GGGATCCCGGACTTCATCGATATCGACAACGGCACTTCCCAAGACTTCGA
CAACGACGGCATCCCTGACAGCTGCGAGACATTCGTTGCAGGGAGTGCGA
GTCCCTATGACACACAGGACGGCGCGCTCGTCGCACTCTATCTCCCGACT
ATTCGTCGTGCGATCGAGTACATCGACGACTCGTTCGACAATCGCGTAGA
GATTGGCGCAACGCTCTCGCTCTTCGATTTCAGCTCAGATGACGATGACG
ATAACGATAATGTCATCGGCTCTGCAGGATCATCTCGCTTCACGATCCCC
TGGTCTGTGTATGTCGAGGGGCTGCGCAGTCAGTCGCTTCGCGATGACCC
GGACTTTGCGAATGCGCTTCCCAGCTCGTCTGTGAATGTCCTCTACAACG
GATCCGCTTCGAGTACTGTCGAGACAGAAGTCGTCGTCACGATGGCGCAG
CTCCGAGCTATCTTCGGAGATACCGTCGTTCCCCAAGGACAAGCGGTCTC
GATCACTTTCAACTCATCCGTCGGCTGGAACTTCTTCGGTTGTGGCGTTG
ATCCTGTTGGATCACAGAGCTCGCTGATCGATGTCGCCGTGCACGAGTTC
ACGCACGCGATGGGCTTCACGAGTGGAATCGCAGAGGGTGGGAACAACTC
GAGTAATCAGATTCAGGGACTCGATATCGCACGCTTCCGTGCATCGAACT
TGCCATTCTCTCTCGCGACATTCGGATCGAATCCCCGTCTCGGGGAGAGC
TTTACTGCAGAGCCGCACTTCTACAGCAGTTTCCCGAACACGTTCACAAC
GACGCTCGAGTCGGGTGATGACAATCAGCCCTCTCATCTCGTCTATATCC
AAGACTTCGACGACAAGCTGGGCGTGATGGATCCCGTTCTCACGAACGGG
GAGACCCATTGCCCGTTCTTCTACTCGAACGCGGATATCCAGCCGCTCGA
TGATATGGGCTGGCGCCCGGTCATCGGGAACGATTTCCAAGACTGCAACA
GCAACGGGATCCCGGACTTCATCGATATCGACAACGGCACTTCCCAAGAC
TTCGACAACGACGGCATCCCTGACAGCTGCGAGACATTCGTTGCAGGGAG
TGCGAGTCCC
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