mRNA_M-pyrifera_M_contig77240.18203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig77240.18203.1
Unique NamemRNA_M-pyrifera_M_contig77240.18203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig77240.18203.1 vs. uniprot
Match: A0A517XIY8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XIY8_9PLAN)

HSP 1 Score: 513 bits (1322), Expect = 8.080e-183
Identity = 253/268 (94.40%), Postives = 266/268 (99.25%), Query Frame = 1 
Query:    1 IAYESLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGVIDFQPVRRKRPMLELKILGQDHGAIPVQPYVYHDERWTGSHQRVFAKLGSRAFSAEYMYMIAKYEAALAFYKNGRDYWFYPLDKMSRDYHVSPQFACAGLRALVQLGVMSVNYGQYGITPNENEFGRANRYYFHGFAESVRREQKLNQLRQQFPDQIDQALKLAPVLINGATVKNVSGICELLTQHGSRSVQQVFDSLKALPVRSLKRRLPYAESLIR 804
            IAY+SLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGVIDFQPVRRKRP++ELKILGQ+HGAIPVQPYVYHDERWTGSHQRVFAKLGS+AFSAEYMYMIAKYEAALAFYKNGRDYWFYPLD++SRDYHVSPQFACAGLRALVQLGVMSVNYGQYGITPNE+EFGRANRYYFHGFAESVRREQKLNQLRQQFPD+IDQALKLAPVLINGATVKNVSGIC+LLTQ+G +SVQQVFDSLKALPVRSLKR+LPYAESL R
Sbjct:   50 IAYDSLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGVIDFQPVRRKRPLMELKILGQNHGAIPVQPYVYHDERWTGSHQRVFAKLGSKAFSAEYMYMIAKYEAALAFYKNGRDYWFYPLDRISRDYHVSPQFACAGLRALVQLGVMSVNYGQYGITPNEDEFGRANRYYFHGFAESVRREQKLNQLRQQFPDEIDQALKLAPVLINGATVKNVSGICDLLTQYGVQSVQQVFDSLKALPVRSLKRQLPYAESLFR 317
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BLAST of mRNA_M-pyrifera_M_contig77240.18203.1 vs. uniprot
Match: A0A3D3REM5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3REM5_9PLAN)

HSP 1 Score: 479 bits (1234), Expect = 3.400e-169
Identity = 234/269 (86.99%), Postives = 257/269 (95.54%), Query Frame = 1 
Query:    1 IAYESLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGVIDFQPVRRKRPMLELKILGQDHGAIPVQPYVYHDERWTGSHQRVFAKLGSRAFSAEYMYMIAKYEAALAFYKNGRDYWFYPLDKMSRDYHVSPQFACAGLRALVQLGVMSVNYGQYGITPNENEFGRANRYYFHGFAESVRREQKLNQLRQQFPDQIDQALKLAPVLINGATVKNVSGICELLTQHGSRSVQQVFDSLKALPVRSLKRRLPYAESLIRG 807
            I+YESLNSFGQPVQLSHQKLCEACGVPADAS AR+TISKLLRQLREEYGVIDFQPVRRKRP++ELKILGQ HGAIP+Q YVYHDE WT   QR FAKLGSRAFSAEYMY+IAK EAALA++KN R+YWFYPL+K+SRDYHVSPQFACAGLRALVQLG+MSVNYGQYGITPNENEFGRANRYYFHGFA +VRRE++LNQLRQQFPD+I+QALKLAPVLINGATVKNVSGIC+LLTQ+G+RSVQQVFDSLK LPVRSLKRRLPYAE+++RG
Sbjct:   64 ISYESLNSFGQPVQLSHQKLCEACGVPADASTARSTISKLLRQLREEYGVIDFQPVRRKRPLMELKILGQRHGAIPIQSYVYHDEPWTSFRQRAFAKLGSRAFSAEYMYLIAKCEAALAYHKNKREYWFYPLEKISRDYHVSPQFACAGLRALVQLGIMSVNYGQYGITPNENEFGRANRYYFHGFAATVRRERELNQLRQQFPDEINQALKLAPVLINGATVKNVSGICDLLTQYGARSVQQVFDSLKVLPVRSLKRRLPYAEAILRG 332
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BLAST of mRNA_M-pyrifera_M_contig77240.18203.1 vs. uniprot
Match: A0A3D3RCJ4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RCJ4_9PLAN)

HSP 1 Score: 477 bits (1228), Expect = 1.630e-168
Identity = 230/269 (85.50%), Postives = 256/269 (95.17%), Query Frame = 1 
Query:    1 IAYESLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGVIDFQPVRRKRPMLELKILGQDHGAIPVQPYVYHDERWTGSHQRVFAKLGSRAFSAEYMYMIAKYEAALAFYKNGRDYWFYPLDKMSRDYHVSPQFACAGLRALVQLGVMSVNYGQYGITPNENEFGRANRYYFHGFAESVRREQKLNQLRQQFPDQIDQALKLAPVLINGATVKNVSGICELLTQHGSRSVQQVFDSLKALPVRSLKRRLPYAESLIRG 807
            IA+ESLNSFGQPVQL+H++LC+ CGVPA+ S AR+TISKLLRQLREEYGVIDFQPVRRKRP++EL+ILGQ HGA+P++ YVYHDERWTG HQRVFAKLGSRAFSAEYMYMIAKYEAALA +KNGRDYWFYPL+K+SRDYHVSPQFACAGLRALVQLG+MSVNYGQYGITP ENEFGRANRYYFHGF  +VRREQ+LNQLR+QFP++IDQALKLAPVLINGATV+NVSGIC+LL QHG+ SVQQVFDSLK LPVRSLKRRLPYAE+LIRG
Sbjct:   49 IAFESLNSFGQPVQLTHKQLCDVCGVPAETSTARSTISKLLRQLREEYGVIDFQPVRRKRPLIELRILGQVHGAVPIRSYVYHDERWTGYHQRVFAKLGSRAFSAEYMYMIAKYEAALALHKNGRDYWFYPLEKISRDYHVSPQFACAGLRALVQLGIMSVNYGQYGITPKENEFGRANRYYFHGFEATVRREQELNQLRKQFPNEIDQALKLAPVLINGATVRNVSGICDLLAQHGTLSVQQVFDSLKVLPVRSLKRRLPYAEALIRG 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig77240.18203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517XIY8_9PLAN8.080e-18394.40Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A3D3REM5_9PLAN3.400e-16986.99Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A3D3RCJ4_9PLAN1.630e-16885.50Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig77240contigM-pyrifera_M_contig77240:3..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size810
Cds size810
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.6388903-CDS-M-pyrifera_M_contig77240:2..8121622816673.6388903-CDS-M-pyrifera_M_contig77240:2..812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77240 3..812 +
1692278111.7301395-CDS-M-pyrifera_M_contig77240:2..8121692278111.7301395-CDS-M-pyrifera_M_contig77240:2..812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig77240 3..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig77240.18203.1prot_M-pyrifera_M_contig77240.18203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig77240 3..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig77240.18203.1

>prot_M-pyrifera_M_contig77240.18203.1 ID=prot_M-pyrifera_M_contig77240.18203.1|Name=mRNA_M-pyrifera_M_contig77240.18203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=270bp
IAYESLNSFGQPVQLSHQKLCEACGVPADASAARTTISKLLRQLREEYGV
IDFQPVRRKRPMLELKILGQDHGAIPVQPYVYHDERWTGSHQRVFAKLGS
RAFSAEYMYMIAKYEAALAFYKNGRDYWFYPLDKMSRDYHVSPQFACAGL
RALVQLGVMSVNYGQYGITPNENEFGRANRYYFHGFAESVRREQKLNQLR
QQFPDQIDQALKLAPVLINGATVKNVSGICELLTQHGSRSVQQVFDSLKA
LPVRSLKRRLPYAESLIRG*
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mRNA from alignment at M-pyrifera_M_contig77240:3..812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig77240.18203.1 ID=mRNA_M-pyrifera_M_contig77240.18203.1|Name=mRNA_M-pyrifera_M_contig77240.18203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig77240:3..812+ (Macrocystis pyrifera P11B4 male)
ATCGCATATGAATCTCTGAACTCTTTCGGTCAGCCGGTTCAGTTGTCTCA
CCAGAAGCTTTGTGAGGCTTGTGGTGTGCCTGCCGATGCCAGCGCTGCCC
GCACTACTATTTCAAAACTTCTCCGTCAGCTTCGGGAAGAATATGGCGTC
ATTGATTTTCAGCCGGTTCGTCGCAAACGTCCCATGCTGGAACTCAAAAT
TCTCGGGCAGGATCATGGAGCGATCCCGGTACAGCCTTATGTTTATCACG
ATGAGCGATGGACTGGTTCTCACCAGCGTGTCTTTGCAAAGCTCGGTTCC
CGGGCATTCTCTGCAGAGTACATGTATATGATTGCAAAGTACGAAGCAGC
CCTGGCATTCTATAAGAATGGACGGGACTACTGGTTTTATCCGCTCGATA
AAATGTCGAGAGACTATCATGTTTCGCCGCAATTTGCCTGTGCCGGCCTG
CGGGCTCTCGTTCAACTGGGAGTCATGAGCGTGAATTATGGACAGTACGG
AATTACCCCCAATGAGAATGAATTCGGTCGGGCAAATCGTTACTACTTTC
ATGGCTTCGCAGAATCCGTGCGGAGAGAACAAAAACTTAATCAGTTGCGA
CAGCAGTTTCCGGATCAGATCGACCAGGCTTTGAAACTGGCACCAGTGCT
TATCAATGGGGCTACGGTCAAAAACGTATCGGGAATATGCGAACTGCTGA
CTCAGCACGGAAGTCGATCTGTGCAGCAGGTATTTGATTCCTTGAAGGCT
TTACCCGTGCGCAGTCTGAAGCGTCGATTGCCTTACGCTGAATCACTGAT
TCGCGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig77240:3..812+

>mRNA_M-pyrifera_M_contig77240.18203.1 ID=mRNA_M-pyrifera_M_contig77240.18203.1|Name=mRNA_M-pyrifera_M_contig77240.18203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1620bp|location=Sequence derived from alignment at M-pyrifera_M_contig77240:3..812+ (Macrocystis pyrifera P11B4 male)
ATCGCATATGAATCTCTGAACTCTTTCGGTCAGCCGGTTCAGTTGTCTCA
CCAGAAGCTTTGTGAGGCTTGTGGTGTGCCTGCCGATGCCAGCGCTGCCC
GCACTACTATTTCAAAACTTCTCCGTCAGCTTCGGGAAGAATATGGCGTC
ATTGATTTTCAGCCGGTTCGTCGCAAACGTCCCATGCTGGAACTCAAAAT
TCTCGGGCAGGATCATGGAGCGATCCCGGTACAGCCTTATGTTTATCACG
ATGAGCGATGGACTGGTTCTCACCAGCGTGTCTTTGCAAAGCTCGGTTCC
CGGGCATTCTCTGCAGAGTACATGTATATGATTGCAAAGTACGAAGCAGC
CCTGGCATTCTATAAGAATGGACGGGACTACTGGTTTTATCCGCTCGATA
AAATGTCGAGAGACTATCATGTTTCGCCGCAATTTGCCTGTGCCGGCCTG
CGGGCTCTCGTTCAACTGGGAGTCATGAGCGTGAATTATGGACAGTACGG
AATTACCCCCAATGAGAATGAATTCGGTCGGGCAAATCGTTACTACTTTC
ATGGCTTCGCAGAATCCGTGCGGAGAGAACAAAAACTTAATCAGTTGCGA
CAGCAGTTTCCGGATCAGATCGACCAGGCTTTGAAACTGGCACCAGTGCT
TATCAATGGGGCTACGGTCAAAAACGTATCGGGAATATGCGAACTGCTGA
CTCAGCACGGAAGTCGATCTGTGCAGCAGGTATTTGATTCCTTGAAGGCT
TTACCCGTGCGCAGTCTGAAGCGTCGATTGCCTTACGCTGAATCACTGAT
TCGCGGTTGAATCGCATATGAATCTCTGAACTCTTTCGGTCAGCCGGTTC
AGTTGTCTCACCAGAAGCTTTGTGAGGCTTGTGGTGTGCCTGCCGATGCC
AGCGCTGCCCGCACTACTATTTCAAAACTTCTCCGTCAGCTTCGGGAAGA
ATATGGCGTCATTGATTTTCAGCCGGTTCGTCGCAAACGTCCCATGCTGG
AACTCAAAATTCTCGGGCAGGATCATGGAGCGATCCCGGTACAGCCTTAT
GTTTATCACGATGAGCGATGGACTGGTTCTCACCAGCGTGTCTTTGCAAA
GCTCGGTTCCCGGGCATTCTCTGCAGAGTACATGTATATGATTGCAAAGT
ACGAAGCAGCCCTGGCATTCTATAAGAATGGACGGGACTACTGGTTTTAT
CCGCTCGATAAAATGTCGAGAGACTATCATGTTTCGCCGCAATTTGCCTG
TGCCGGCCTGCGGGCTCTCGTTCAACTGGGAGTCATGAGCGTGAATTATG
GACAGTACGGAATTACCCCCAATGAGAATGAATTCGGTCGGGCAAATCGT
TACTACTTTCATGGCTTCGCAGAATCCGTGCGGAGAGAACAAAAACTTAA
TCAGTTGCGACAGCAGTTTCCGGATCAGATCGACCAGGCTTTGAAACTGG
CACCAGTGCTTATCAATGGGGCTACGGTCAAAAACGTATCGGGAATATGC
GAACTGCTGACTCAGCACGGAAGTCGATCTGTGCAGCAGGTATTTGATTC
CTTGAAGGCTTTACCCGTGCGCAGTCTGAAGCGTCGATTGCCTTACGCTG
AATCACTGATTCGCGGTTGA
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