mRNA_M-pyrifera_M_contig76664.18070.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76664.18070.1
Unique NamemRNA_M-pyrifera_M_contig76664.18070.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig76664.18070.1 vs. uniprot
Match: A0A5A8CHG5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHG5_CAFRO)

HSP 1 Score: 118 bits (296), Expect = 1.670e-30
Identity = 66/167 (39.52%), Postives = 102/167 (61.08%), Query Frame = 1 
Query:    1 LSRLQEQLHALLGQQRTVAQEXXXXXXXXXGLVAHSRATVANLQAAISQSRVPGYWKYHEASDKVRRLEEKREVAKKAKEIEKIQRDIDSVKAAIARTREKALEPPKERPVASLKQWFKLHGRPDPEFGGPGFATRFEPPARVYGGTKHFPSFKSVATTMKAGRATK 501
            L +L E+L +LL +Q  V++E         GL   S+ +V +L+AAI++SR PGY+KY+  SD  R +E K  ++ K   + ++Q+ +D+ +A +   R +A +P     V  L++WF  + RP P FGG G AT F    RV+GGTKH+P F+SVA+ M+ GRA +
Sbjct:   26 LRKLTEELSSLLMEQAEVSREVNTLLTADGGLNEASKRSVKSLEAAIAKSRQPGYFKYYTPSDATRAVETKNVLSAKVARLAELQKRVDAKQAQLDSARREAAKPTAAVDVPDLRRWFARYDRPAPAFGGEGAATTFSASRRVFGGTKHYPGFRSVASDMRPGRALR 192
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BLAST of mRNA_M-pyrifera_M_contig76664.18070.1 vs. uniprot
Match: A0A7S1CN40_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN40_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.310e-28
Identity = 71/165 (43.03%), Postives = 102/165 (61.82%), Query Frame = 1 
Query:   10 LQEQLHALLGQQRTVAQEXXXXXXXXXGLVAHSRATVANLQAAISQSRVPGYWKYHEASDKVRRLEEKREVAKKAKEIEKIQRDIDSVKAAI-ARTREKALEPPKERPVASLKQWFKLHGRPDPEFGGPGFATRFEPPARVYGGTKHFPSFKSVATTMKAGRATK 501
            L E+L  L+ +Q+T + E         GL  ++R  + NL+AA+ QS+  GY+KYHE +++V R+E    ++KK KEI+ +Q +ID V AAI AR   + +  PKE  + SLK++F  +GRPDP    P   T F   A+VYGG+ H+ SFKSVA  MK GR T+
Sbjct:   13 LGEKLITLIRRQKTASDEYTALLTKKDGLKENTRMAIKNLEAAVVQSKRAGYFKYHEPTEEVDRIERGALLSKKLKEIQDLQAEIDEVNAAIKARHEAELVARPKE--LGSLKEFFAEYGRPDPVMFEP-LRTEFHAHAKVYGGSTHYSSFKSVAVDMKKGRVTR 174
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BLAST of mRNA_M-pyrifera_M_contig76664.18070.1 vs. uniprot
Match: A0A2R5GVQ5_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVQ5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 8.850e-25
Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 1 
Query:   10 LQEQLHALLGQQRTVAQEXXXXXXXXX------GLVAHSRATVANLQAAISQSRVPGYWKYHEASDKVRRLEEKREVAKKAKEIEKIQRDIDSVKAAIARTREK---ALEPPKERPVASLKQWFKLHGRPDPEFGG-PGFATRFEPPARVYGGTKHFPSFKSVATTMKAGRAT 498
            L E+  ALL +Q  VA+E               G + +SR T  NL+AAI+QSR PGY++YH  S +VRR+E+  E+AK A  I +++  + +V A I    E+   A+   K  PV+  + WF+  G P  E     G A+ F P  +VYGGT H  +F+SVA T+K GRAT
Sbjct:    8 LLEKKRALLAEQAAVAREFNHWLTAKSDDPNEDGALENSRKTTKNLEAAIAQSRNPGYFQYHRRSRRVRRMEKGNELAKLAARISRLEDQLRAVTAQIETLHEERRNAILTAKPPPVSGFQDWFRQFGEPSEEMKSRKGLASEFVPNNKVYGGTPHHRAFRSVAVTLKKGRAT 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76664.18070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8CHG5_CAFRO1.670e-3039.52Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1CN40_9STRA1.310e-2843.03Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A2R5GVQ5_9STRA8.850e-2539.88Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76664contigM-pyrifera_M_contig76664:413..916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue4.7e-16
Seed eggNOG ortholog157072.XP_008864785.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C2XI@1,2S2SM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size504
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816666.1115408-CDS-M-pyrifera_M_contig76664:412..9161622816666.1115408-CDS-M-pyrifera_M_contig76664:412..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76664 413..916 -
1692278107.2892656-CDS-M-pyrifera_M_contig76664:412..9161692278107.2892656-CDS-M-pyrifera_M_contig76664:412..916Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76664 413..916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76664.18070.1prot_M-pyrifera_M_contig76664.18070.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76664 413..916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76664.18070.1

>prot_M-pyrifera_M_contig76664.18070.1 ID=prot_M-pyrifera_M_contig76664.18070.1|Name=mRNA_M-pyrifera_M_contig76664.18070.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
LSRLQEQLHALLGQQRTVAQELHALLASEDGLVAHSRATVANLQAAISQS
RVPGYWKYHEASDKVRRLEEKREVAKKAKEIEKIQRDIDSVKAAIARTRE
KALEPPKERPVASLKQWFKLHGRPDPEFGGPGFATRFEPPARVYGGTKHF
PSFKSVATTMKAGRATK*
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mRNA from alignment at M-pyrifera_M_contig76664:413..916-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76664.18070.1 ID=mRNA_M-pyrifera_M_contig76664.18070.1|Name=mRNA_M-pyrifera_M_contig76664.18070.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig76664:413..916- (Macrocystis pyrifera P11B4 male)
CTTTCTAGGCTGCAGGAGCAGCTGCATGCGTTGTTGGGGCAGCAGCGGAC
AGTGGCACAGGAGTTGCACGCGCTGCTGGCGTCGGAGGATGGACTAGTGG
CGCATTCTCGCGCTACAGTGGCGAATTTGCAAGCTGCGATTTCGCAATCT
CGTGTTCCGGGGTACTGGAAGTACCATGAGGCATCGGACAAGGTGCGTCG
TCTCGAAGAGAAGCGGGAGGTGGCGAAGAAGGCCAAGGAGATCGAGAAGA
TCCAGAGAGACATTGATAGTGTGAAGGCTGCCATCGCCAGAACGAGGGAA
AAGGCGCTCGAACCTCCAAAGGAGAGACCCGTGGCCTCCCTCAAGCAGTG
GTTCAAGCTCCACGGCAGACCAGACCCGGAATTTGGGGGTCCAGGCTTTG
CCACCCGGTTTGAGCCCCCTGCGAGGGTGTATGGAGGAACCAAACACTTC
CCCTCGTTCAAGTCCGTTGCCACCACCATGAAGGCCGGAAGAGCCACCAA
GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76664:413..916-

>mRNA_M-pyrifera_M_contig76664.18070.1 ID=mRNA_M-pyrifera_M_contig76664.18070.1|Name=mRNA_M-pyrifera_M_contig76664.18070.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig76664:413..916- (Macrocystis pyrifera P11B4 male)
CTTTCTAGGCTGCAGGAGCAGCTGCATGCGTTGTTGGGGCAGCAGCGGAC
AGTGGCACAGGAGTTGCACGCGCTGCTGGCGTCGGAGGATGGACTAGTGG
CGCATTCTCGCGCTACAGTGGCGAATTTGCAAGCTGCGATTTCGCAATCT
CGTGTTCCGGGGTACTGGAAGTACCATGAGGCATCGGACAAGGTGCGTCG
TCTCGAAGAGAAGCGGGAGGTGGCGAAGAAGGCCAAGGAGATCGAGAAGA
TCCAGAGAGACATTGATAGTGTGAAGGCTGCCATCGCCAGAACGAGGGAA
AAGGCGCTCGAACCTCCAAAGGAGAGACCCGTGGCCTCCCTCAAGCAGTG
GTTCAAGCTCCACGGCAGACCAGACCCGGAATTTGGGGGTCCAGGCTTTG
CCACCCGGTTTGAGCCCCCTGCGAGGGTGTATGGAGGAACCAAACACTTC
CCCTCGTTCAAGTCCGTTGCCACCACCATGAAGGCCGGAAGAGCCACCAA
GTGACTTTCTAGGCTGCAGGAGCAGCTGCATGCGTTGTTGGGGCAGCAGC
GGACAGTGGCACAGGAGTTGCACGCGCTGCTGGCGTCGGAGGATGGACTA
GTGGCGCATTCTCGCGCTACAGTGGCGAATTTGCAAGCTGCGATTTCGCA
ATCTCGTGTTCCGGGGTACTGGAAGTACCATGAGGCATCGGACAAGGTGC
GTCGTCTCGAAGAGAAGCGGGAGGTGGCGAAGAAGGCCAAGGAGATCGAG
AAGATCCAGAGAGACATTGATAGTGTGAAGGCTGCCATCGCCAGAACGAG
GGAAAAGGCGCTCGAACCTCCAAAGGAGAGACCCGTGGCCTCCCTCAAGC
AGTGGTTCAAGCTCCACGGCAGACCAGACCCGGAATTTGGGGGTCCAGGC
TTTGCCACCCGGTTTGAGCCCCCTGCGAGGGTGTATGGAGGAACCAAACA
CTTCCCCTCGTTCAAGTCCGTTGCCACCACCATGAAGGCCGGAAGAGCCA
CCAAGTGA
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