Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 65.1 |
Seed ortholog evalue | 3e-08 |
Seed eggNOG ortholog | 1150600.ADIARSV_2056 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | His Kinase A (phosphoacceptor) domain |
EggNOG OGs | 1IRNU@117747,4NFMG@976,COG0457@1,COG0457@2 |
COG Functional cat. | S |
Best tax level | Sphingobacteriia |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 414 |
Cds size | 414 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816666.0782123-CDS-M-pyrifera_M_contig76660:603..1017 | 1622816666.0782123-CDS-M-pyrifera_M_contig76660:603..1017 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig76660 604..1017 + |
1692278107.2783723-CDS-M-pyrifera_M_contig76660:603..1017 | 1692278107.2783723-CDS-M-pyrifera_M_contig76660:603..1017 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig76660 604..1017 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig76660.18069.1 >prot_M-pyrifera_M_contig76660.18069.1 ID=prot_M-pyrifera_M_contig76660.18069.1|Name=mRNA_M-pyrifera_M_contig76660.18069.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
QERTRIDSLNEISYKLRKSDPQKSMRLGQTAMKLSSDYNYSEGKSRAYLN IGNAYRYLMQVDSGTYILRQGILFDLSQKNNEEDDKYNSLGLLFKRISET DSALFYFEHALNSRKLTNDSLAMASIYNNIGNVYKKIG back to topmRNA from alignment at M-pyrifera_M_contig76660:604..1017+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig76660.18069.1 ID=mRNA_M-pyrifera_M_contig76660.18069.1|Name=mRNA_M-pyrifera_M_contig76660.18069.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig76660:604..1017+ (Macrocystis pyrifera P11B4 male) CAAGAAAGAACCCGTATTGATTCGCTAAATGAGATCTCCTATAAGCTTCG
AAAGTCCGACCCTCAGAAGAGCATGAGACTTGGACAAACTGCCATGAAAC
TTTCATCCGACTACAATTACTCAGAGGGAAAATCCAGAGCCTATCTAAAT
ATAGGAAATGCATACAGATATTTGATGCAGGTTGACTCTGGCACATATAT
CCTTAGGCAGGGCATCCTTTTTGACTTATCTCAAAAAAACAATGAAGAAG
ACGATAAATACAACTCGCTCGGCCTGTTATTTAAAAGAATCAGTGAAACT
GATAGCGCCTTGTTTTATTTCGAACATGCTCTCAACTCAAGAAAGTTGAC
CAACGATTCTTTAGCTATGGCGAGCATTTACAACAACATTGGTAATGTTT
ATAAAAAAATTGGA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig76660:604..1017+ >mRNA_M-pyrifera_M_contig76660.18069.1 ID=mRNA_M-pyrifera_M_contig76660.18069.1|Name=mRNA_M-pyrifera_M_contig76660.18069.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig76660:604..1017+ (Macrocystis pyrifera P11B4 male) CAAGAAAGAACCCGTATTGATTCGCTAAATGAGATCTCCTATAAGCTTCG AAAGTCCGACCCTCAGAAGAGCATGAGACTTGGACAAACTGCCATGAAAC TTTCATCCGACTACAATTACTCAGAGGGAAAATCCAGAGCCTATCTAAAT ATAGGAAATGCATACAGATATTTGATGCAGGTTGACTCTGGCACATATAT CCTTAGGCAGGGCATCCTTTTTGACTTATCTCAAAAAAACAATGAAGAAG ACGATAAATACAACTCGCTCGGCCTGTTATTTAAAAGAATCAGTGAAACT GATAGCGCCTTGTTTTATTTCGAACATGCTCTCAACTCAAGAAAGTTGAC CAACGATTCTTTAGCTATGGCGAGCATTTACAACAACATTGGTAATGTTT ATAAAAAAATTGGACAAGAAAGAACCCGTATTGATTCGCTAAATGAGATC TCCTATAAGCTTCGAAAGTCCGACCCTCAGAAGAGCATGAGACTTGGACA AACTGCCATGAAACTTTCATCCGACTACAATTACTCAGAGGGAAAATCCA GAGCCTATCTAAATATAGGAAATGCATACAGATATTTGATGCAGGTTGAC TCTGGCACATATATCCTTAGGCAGGGCATCCTTTTTGACTTATCTCAAAA AAACAATGAAGAAGACGATAAATACAACTCGCTCGGCCTGTTATTTAAAA GAATCAGTGAAACTGATAGCGCCTTGTTTTATTTCGAACATGCTCTCAAC TCAAGAAAGTTGACCAACGATTCTTTAGCTATGGCGAGCATTTACAACAA CATTGGTAATGTTTATAAAAAAATTGGA back to top
|