mRNA_M-pyrifera_M_contig76187.17969.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76187.17969.1
Unique NamemRNA_M-pyrifera_M_contig76187.17969.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A7S2EPN0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPN0_TRICV)

HSP 1 Score: 87.0 bits (214), Expect = 2.420e-18
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   58 VALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVV--APTVLRNGTQLRVGQTKLNVAI 396
            + ++ + GPYEG+++ +KPRA  P           VGRS G+ F   G+SL +D EVSTTHG+FEIK  G  +FVD GSTNG+    KE+   AP  L +  +L +G T + + +
Sbjct:  123 IYVKVLGGPYEGSSYELKPRARTPCF---------VGRSAGKKFRDRGISLPKDGEVSTTHGKFEIKA-GKAYFVDTGSTNGTVYQDKELEPNAPLELEDDLELIIGTTHVKITL 227          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A7S1FRI1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRI1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.900e-18
Identity = 51/125 (40.80%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   46 IALEVALEAVSGPYE-GTTFIIKPRAHRPGSKKSEFRIPK-VGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVVAPTV---LRNGTQLRVGQTKLNVAIKPV 405
            + LE+ +    GPY+ G T+++KPR          FR P  +GRST + F   G+SL  D E+STTHG+FE+K +G+L++ DLGSTNGS  + ++V  P V   L++G  L++G   L++  K V
Sbjct:  101 VDLEITIRG--GPYDDGKTYLLKPR----------FRAPCFLGRSTSKKFREKGMSLPRDFEMSTTHGKFEVKNNGVLYYTDLGSTNGSFHENRQV-EPEVSLELKDGMVLQIGAGNLHITFKSV 212          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A5A8CYM7_CAFRO (FHA domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYM7_CAFRO)

HSP 1 Score: 84.3 bits (207), Expect = 3.430e-17
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   58 VALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVVA--PTVLRNGTQLRVGQTKLNVAIKP 402
            V  + +SGP+ G   +++PR  R         +PK GRSTG+ F + G+SL EDDEVSTTH + E +  G +   DL STNGS +DG  +    P  L +   LRVGQ+ +++ ++P
Sbjct:  136 VRAKVMSGPHAGIDTVLRPRQRRL--------VPKFGRSTGQQFVKNGISLPEDDEVSTTHAKLEARG-GAVWVTDLDSTNGSILDGASMPPGEPLPLPHQCILRVGQSDIHLTMEP 243          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A6U0IDX9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IDX9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.900e-16
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   58 VALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVV--APTVLRNGTQLRVG 372
            V  E + G Y G TF +KP++  P           +GRS G+ F   G+S+  D EVSTTH + E+K  G  ++ D+GSTNG+ ++G+EV    P V+ +G QL +G
Sbjct:    2 VRAEIIEGLYAGQTFDLKPKSRSPCF---------IGRSAGKKFRDRGISMPNDGEVSTTHAKVEVKG-GKAYYTDVGSTNGTLLNGEEVEPNVPLVITDGMQLLIG 98          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A8K1CGB0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGB0_PYTOL)

HSP 1 Score: 78.6 bits (192), Expect = 2.720e-15
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   46 IALEVALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAF-TRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEV--VAPTVLRNGT--QLRVGQTKLNVAI 396
            +A ++ ++ + GPY+G ++I+            E  I  +GRSTG+ F T  GLS  +D EVSTTHGQ  ++PDG L F DL STNGS I+ + +    PT L      +L VG ++L ++I
Sbjct:   88 LACDIVVQCILGPYKGNSYILN-------MDLEEHPIALIGRSTGKKFRTPHGLSFPKDYEVSTTHGQLRLEPDGQLIFTDLDSTNGSYINDELIDPQQPTPLNPSAPCKLSVGGSELMLSI 202          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: K3X911_GLOUD (FHA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X911_GLOUD)

HSP 1 Score: 77.4 bits (189), Expect = 8.830e-15
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   55 EVALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTR-TGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEV 327
            +V ++ VSGPYEG+T+++K       SKK   R   +GRSTGR F    GLS+ +D E+STTH Q  ++ DG + F DL STNGS I+ + V
Sbjct:  100 DVRIKCVSGPYEGSTYVLKL-----DSKKH--RTCLIGRSTGRKFRAPNGLSMPKDPELSTTHAQLRLEADGRVFFTDLDSTNGSYINDESV 184          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A836CG29_9STRA (SMAD/FHA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG29_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.270e-14
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   91 GTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVV---APTVLRNGTQLRVGQTKLNVAIKPV 405
            G T++++P +  P SK +      +GRSTG+ F  +G+S+S+D  VSTTH +  +   G L+F D GSTNGS ++G  V    AP  L  G  L VG+T L V +  V
Sbjct:    8 GQTWVLRPTS--PPSKGACM----LGRSTGKRFKESGISMSKDSSVSTTHAKITVSG-GRLYFADAGSTNGSTVNGINVGKEGAPVELSTGMVLGVGETLLKVTLVSV 108          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A2D4BDL6_PYTIN (FHA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDL6_PYTIN)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-13
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   10 DEEXXEEGVKWPIALEVALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAF-TRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDGKEVVAPTV-----LRNGTQLRVGQTKLNVAI 396
            DEE  EE  + P+A +V ++   GPY+G ++I+            +     +GRSTG+ F    GLS  +D E+STTHGQ  ++PDG L + DL STNGS ++  ++V P       L    QL VG  +L ++I
Sbjct:   40 DEEEDEE--EPPLAYDVIVQCADGPYKGNSYILH-------MDLEQHPTCLIGRSTGKKFRVPHGLSFPKDSELSTTHGQLRLEPDGRLLYTDLDSTNGSYVND-DLVPPQEPVSLSLTEPIQLAVGGGELVLSI 164          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A1E7EYX0_9STRA (FHA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYX0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.600e-13
Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   58 VALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIK----PDGLLHFVDLGSTNGSQIDGKEVVAPT--VLRNGTQLRVGQTKLNVAI 396
            + ++ VSGP EG  + ++PR               +GRS GR F + G+SL +D E STTHG+FE           +FVD+GSTNG+QIDG E       V+  G  +  G+T L V +
Sbjct:  137 IHIDVVSGPNEGLFYDLQPRTRT---------YSWIGRSQGRKFKQKGISLPKDLECSTTHGRFEYTNTTGEGPKFYFVDVGSTNGTQIDGYECEPNVSYVISTGMNILCGKTNLKVTL 246          
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Match: A0A4D9D239_9STRA (FHA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D239_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.650e-12
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   52 LEVALEAVSGPYEGTTFIIKPRAHRPGSKKSEFRIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTNGSQIDG 318
            L V L  + GPYEGT F +     R      EF    VGRSTG+     G S+ +D EVST HG+FE +  G + + DLGSTNGS I+G
Sbjct:  117 LTVILTVIDGPYEGTVFRLVQSKGR-----KEF---VVGRSTGKKVKEHGASMPQDPEVSTVHGRFECRAGGKVMYEDLGSTNGSFING 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76187.17969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2EPN0_TRICV2.420e-1841.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1FRI1_9STRA4.900e-1840.80Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A5A8CYM7_CAFRO3.430e-1740.17FHA domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A6U0IDX9_9STRA7.900e-1639.25Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A8K1CGB0_PYTOL2.720e-1539.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X911_GLOUD8.830e-1546.74FHA domain-containing protein n=1 Tax=Globisporang... [more]
A0A836CG29_9STRA7.270e-1440.74SMAD/FHA domain-containing protein n=1 Tax=Tribone... [more]
A0A2D4BDL6_PYTIN1.080e-1337.04FHA domain-containing protein n=1 Tax=Pythium insi... [more]
A0A1E7EYX0_9STRA1.600e-1337.82FHA domain-containing protein n=1 Tax=Fragilariops... [more]
A0A4D9D239_9STRA1.650e-1246.07FHA domain-containing protein n=1 Tax=Nannochlorop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76187contigM-pyrifera_M_contig76187:601..1014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2850.Phatr45323
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FHA domain
EggNOG OGs2E05Y@1,2S7MG@2759,2XDX1@2836
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-02_005410.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.2119286-CDS-M-pyrifera_M_contig76187:600..10141622816661.2119286-CDS-M-pyrifera_M_contig76187:600..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76187 601..1014 -
1692278104.590919-CDS-M-pyrifera_M_contig76187:600..10141692278104.590919-CDS-M-pyrifera_M_contig76187:600..1014Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76187 601..1014 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76187.17969.1prot_M-pyrifera_M_contig76187.17969.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76187 601..1014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76187.17969.1

>prot_M-pyrifera_M_contig76187.17969.1 ID=prot_M-pyrifera_M_contig76187.17969.1|Name=mRNA_M-pyrifera_M_contig76187.17969.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
KEEDEEEEEEGVKWPIALEVALEAVSGPYEGTTFIIKPRAHRPGSKKSEF
RIPKVGRSTGRAFTRTGLSLSEDDEVSTTHGQFEIKPDGLLHFVDLGSTN
GSQIDGKEVVAPTVLRNGTQLRVGQTKLNVAIKPVSP*
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mRNA from alignment at M-pyrifera_M_contig76187:601..1014-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76187.17969.1 ID=mRNA_M-pyrifera_M_contig76187.17969.1|Name=mRNA_M-pyrifera_M_contig76187.17969.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig76187:601..1014- (Macrocystis pyrifera P11B4 male)
AAGGAGGAGGATGAGGAGGAGGAAGAAGAGGGTGTGAAATGGCCCATTGC GTTGGAAGTTGCCTTGGAGGCAGTGAGTGGTCCGTATGAAGGCACTACGT TCATCATCAAGCCCCGTGCACACCGACCTGGGTCGAAAAAGAGCGAATTT CGGATTCCAAAGGTTGGCCGCTCCACGGGCCGGGCATTTACTCGCACGGG CTTAAGTCTCTCGGAGGACGACGAGGTGAGCACCACGCACGGGCAGTTCG AAATCAAGCCAGACGGCCTGCTCCACTTCGTGGACCTCGGATCCACCAAC GGGTCCCAAATCGACGGAAAAGAGGTCGTGGCACCAACCGTGCTCCGCAA CGGAACACAACTCAGGGTGGGACAGACAAAACTCAACGTGGCCATCAAGC CAGTGTCGCCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76187:601..1014-

>mRNA_M-pyrifera_M_contig76187.17969.1 ID=mRNA_M-pyrifera_M_contig76187.17969.1|Name=mRNA_M-pyrifera_M_contig76187.17969.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig76187:601..1014- (Macrocystis pyrifera P11B4 male)
AAGGAGGAGGATGAGGAGGAGGAAGAAGAGGGTGTGAAATGGCCCATTGC
GTTGGAAGTTGCCTTGGAGGCAGTGAGTGGTCCGTATGAAGGCACTACGT
TCATCATCAAGCCCCGTGCACACCGACCTGGGTCGAAAAAGAGCGAATTT
CGGATTCCAAAGGTTGGCCGCTCCACGGGCCGGGCATTTACTCGCACGGG
CTTAAGTCTCTCGGAGGACGACGAGGTGAGCACCACGCACGGGCAGTTCG
AAATCAAGCCAGACGGCCTGCTCCACTTCGTGGACCTCGGATCCACCAAC
GGGTCCCAAATCGACGGAAAAGAGGTCGTGGCACCAACCGTGCTCCGCAA
CGGAACACAACTCAGGGTGGGACAGACAAAACTCAACGTGGCCATCAAGC
CAGTGTCGCCGTAAAAGGAGGAGGATGAGGAGGAGGAAGAAGAGGGTGTG
AAATGGCCCATTGCGTTGGAAGTTGCCTTGGAGGCAGTGAGTGGTCCGTA
TGAAGGCACTACGTTCATCATCAAGCCCCGTGCACACCGACCTGGGTCGA
AAAAGAGCGAATTTCGGATTCCAAAGGTTGGCCGCTCCACGGGCCGGGCA
TTTACTCGCACGGGCTTAAGTCTCTCGGAGGACGACGAGGTGAGCACCAC
GCACGGGCAGTTCGAAATCAAGCCAGACGGCCTGCTCCACTTCGTGGACC
TCGGATCCACCAACGGGTCCCAAATCGACGGAAAAGAGGTCGTGGCACCA
ACCGTGCTCCGCAACGGAACACAACTCAGGGTGGGACAGACAAAACTCAA
CGTGGCCATCAAGCCAGTGTCGCCGTAA
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