mRNA_M-pyrifera_M_contig76053.17941.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig76053.17941.1
Unique NamemRNA_M-pyrifera_M_contig76053.17941.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A7E5VUJ8_TRINI (ras-related protein Rab-11A n=26 Tax=Ditrysia TaxID=37567 RepID=A0A7E5VUJ8_TRINI)

HSP 1 Score: 207 bits (527), Expect = 6.640e-65
Identity = 100/138 (72.46%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIY 414
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H S+E+   WL+ELR++AD+ I +MLVGNKSDLRH+R + TE A AFA R  ++FIETSALD+T+V+PAF+ +L EIY
Sbjct:   36 FNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLSYENVERWLRELRDHADQNILIMLVGNKSDLRHLRSISTEEAKAFAERNGLSFIETSALDSTNVEPAFQNILTEIY 173          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: L1J5D4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J5D4_GUITC)

HSP 1 Score: 206 bits (524), Expect = 2.220e-64
Identity = 105/174 (60.34%), Postives = 133/174 (76.44%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYHRARKEGKGGGDAATADAFDRGEDVHLEGEGVTGAA 522
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H +FE+   WL+ELR++AD  I +MLVGNKSDLRH+R V T+ A  +A +  ++FIETSALD+T+V+ AF+T+L EIY    +     G++  + +  +GE V +  E  T AA
Sbjct:   35 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTFENVDRWLKELRDHADHNIVIMLVGNKSDLRHLRAVATDDARGYAEQRNLSFIETSALDSTNVEQAFQTILTEIYRLVSRRPMEAGESGDSPSVGQGEKVIVSREDETKAA 208          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A6U2CTF7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2CTF7_HEMAN)

HSP 1 Score: 206 bits (523), Expect = 3.150e-64
Identity = 105/164 (64.02%), Postives = 130/164 (79.27%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYHRARKEGK-GGGDAATADAFDRGEDV 489
            FNLE+K TIGVEFAT++I+VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H +FE+   WL+ELR++AD  I +MLVGNKSDLRH+R V T+ A  +A + +++FIETSALD+T+V+ AF+T+L EIY    + G    G+A  A A   GE V
Sbjct:   37 FNLESKSTIGVEFATRSINVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHVTFENVDRWLKELRDHADHNIVIMLVGNKSDLRHLRAVPTDDATGYAEQRKLSFIETSALDSTNVEQAFQTILTEIYRLVSRRGPLEAGEAEAAPAVGAGETV 200          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A8J2JJC5_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JJC5_9HEXA)

HSP 1 Score: 205 bits (522), Expect = 4.060e-64
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYH 417
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD+ I +MLVGNKSDLRH+R V T+ A AFA R +++FIETSALD+T+V+ AF  +L EIYH
Sbjct:   36 FNLESKSTIGVEFATRSIKVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPTDEAKAFAERHRLSFIETSALDSTNVETAFHNILTEIYH 174          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A226EDH1_FOLCA (Ras-related protein Rab-11B n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EDH1_FOLCA)

HSP 1 Score: 205 bits (522), Expect = 4.330e-64
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYH 417
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD+ I +MLVGNKSDLRH+R V T+ A AFA R +++FIETSALD+T+V+ AF  +L EIYH
Sbjct:   36 FNLESKSTIGVEFATRSIKVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPTDEAKAFAERHRLSFIETSALDSTNVETAFHNILTEIYH 174          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: H3AW20_LATCH (Uncharacterized protein n=6 Tax=Euteleostomi TaxID=117571 RepID=H3AW20_LATCH)

HSP 1 Score: 205 bits (521), Expect = 5.760e-64
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYH 417
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD  I +MLVGNKSDLRH+R V T+ A AFA +  ++FIETSALD+T+V+ AF+T+L EIYH
Sbjct:   36 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEAKAFAEKNGLSFIETSALDSTNVETAFQTILTEIYH 174          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: E1ZTE2_CHLVA (Uncharacterized protein n=3 Tax=Chlorellaceae TaxID=35461 RepID=E1ZTE2_CHLVA)

HSP 1 Score: 204 bits (520), Expect = 8.700e-64
Identity = 103/154 (66.88%), Postives = 124/154 (80.52%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYHRARKEGKGGGDAATA 462
            F+LE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+  T+FE+   WL+ELR++AD  I +MLVGNKSDLRH+R V+TE A AF  RE ++FIETSAL+AT+V+ AF+ +L EIYH   K+     D   A
Sbjct:   37 FSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKQTTFENVERWLKELRDHADANIVIMLVGNKSDLRHLRSVQTEDAKAFCEREGLSFIETSALEATNVEQAFQRILTEIYHIVSKKALASEDGPAA 190          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A6A4XET9_AMPAM (Ras-related protein Rab-11A n=2 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4XET9_AMPAM)

HSP 1 Score: 204 bits (518), Expect = 1.590e-63
Identity = 99/138 (71.74%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIY 414
            FNLE+K TIGVEFAT++ISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD+ I +MLVGNKSDLRH+R V T+ A AFA R  ++FIETSALD+T+V+ AF+ +L EIY
Sbjct:   37 FNLESKSTIGVEFATRSISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPTDEAKAFAERNTLSFIETSALDSTNVETAFQNILTEIY 174          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A6A4X3U5_AMPAM (Ras-related protein Rab-11A n=2 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4X3U5_AMPAM)

HSP 1 Score: 204 bits (518), Expect = 1.700e-63
Identity = 99/138 (71.74%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIY 414
            FNLE+K TIGVEFAT++ISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD+ I +MLVGNKSDLRH+R V T+ A AFA R  ++FIETSALD+T+V+ AF+ +L EIY
Sbjct:   37 FNLESKSTIGVEFATRSISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPTDEAKAFAERNTLSFIETSALDSTNVETAFQNILTEIY 174          
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Match: A0A7N9CS07_MACFA (RAB11A, member RAS oncogene family n=3 Tax=Euarchontoglires TaxID=314146 RepID=A0A7N9CS07_MACFA)

HSP 1 Score: 202 bits (515), Expect = 4.680e-63
Identity = 99/144 (68.75%), Postives = 123/144 (85.42%), Query Frame = 1
Query:    1 FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVKTEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYHRARKE 432
            FNLE+K TIGVEFAT++I VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI+ H ++E+   WL+ELR++AD  I +MLVGNKSDLRH+R V T+ A AFA +  ++FIETSALD+T+V+ AF+T+L EIY  ++K+
Sbjct:   36 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYIVSQKQ 179          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig76053.17941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7E5VUJ8_TRINI6.640e-6572.46ras-related protein Rab-11A n=26 Tax=Ditrysia TaxI... [more]
L1J5D4_GUITC2.220e-6460.34Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A6U2CTF7_HEMAN3.150e-6464.02Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A8J2JJC5_9HEXA4.060e-6471.22Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A226EDH1_FOLCA4.330e-6471.22Ras-related protein Rab-11B n=1 Tax=Folsomia candi... [more]
H3AW20_LATCH5.760e-6471.22Uncharacterized protein n=6 Tax=Euteleostomi TaxID... [more]
E1ZTE2_CHLVA8.700e-6466.88Uncharacterized protein n=3 Tax=Chlorellaceae TaxI... [more]
A0A6A4XET9_AMPAM1.590e-6371.74Ras-related protein Rab-11A n=2 Tax=Thoracicalcare... [more]
A0A6A4X3U5_AMPAM1.700e-6371.74Ras-related protein Rab-11A n=2 Tax=Thoracicalcare... [more]
A0A7N9CS07_MACFA4.680e-6368.75RAB11A, member RAS oncogene family n=3 Tax=Euarcho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig76053contigM-pyrifera_M_contig76053:1..552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog55529.EKX43726
KEGG koko:K07904,ko:K07905
KEGG Pathwayko04144,ko04152,ko04961,ko04962,ko04972,map04144,map04152,map04961,map04962,map04972
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size552
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.7932804-CDS-M-pyrifera_M_contig76053:0..5521622816659.7932804-CDS-M-pyrifera_M_contig76053:0..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76053 1..552 +
1692278103.8822327-CDS-M-pyrifera_M_contig76053:0..5521692278103.8822327-CDS-M-pyrifera_M_contig76053:0..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig76053 1..552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig76053.17941.1prot_M-pyrifera_M_contig76053.17941.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig76053 1..552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig76053.17941.1

>prot_M-pyrifera_M_contig76053.17941.1 ID=prot_M-pyrifera_M_contig76053.17941.1|Name=mRNA_M-pyrifera_M_contig76053.17941.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
FNLETKPTIGVEFATQTISVDGKTIKAQIWDTAGQERYRAITSAYYRGAV
GALLVYDISSHTSFEHTAHWLQELRNYADEGITVMLVGNKSDLRHVRQVK
TEHAAAFARREQIAFIETSALDATHVKPAFETVLKEIYHRARKEGKGGGD
AATADAFDRGEDVHLEGEGVTGAAAEGGGGCPC*
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mRNA from alignment at M-pyrifera_M_contig76053:1..552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig76053.17941.1 ID=mRNA_M-pyrifera_M_contig76053.17941.1|Name=mRNA_M-pyrifera_M_contig76053.17941.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig76053:1..552+ (Macrocystis pyrifera P11B4 male)
TTCAACCTGGAGACGAAGCCTACGATTGGGGTGGAGTTCGCTACACAGAC CATCAGCGTGGACGGGAAGACGATCAAGGCTCAGATTTGGGACACTGCTG GTCAGGAGCGGTACCGGGCTATCACGTCGGCTTACTATCGCGGGGCAGTG GGTGCTCTTTTGGTGTACGACATTTCCTCGCACACCTCCTTCGAGCACAC GGCGCATTGGCTGCAGGAACTGCGGAATTACGCCGACGAAGGAATCACCG TCATGCTCGTGGGGAACAAGAGCGATTTGCGCCACGTGCGACAGGTGAAG ACGGAACACGCCGCAGCATTTGCCAGAAGAGAGCAGATCGCATTCATCGA AACCTCGGCCCTCGACGCAACCCACGTCAAGCCAGCCTTCGAAACCGTGC TCAAGGAAATCTACCACCGCGCCAGAAAAGAAGGGAAGGGCGGAGGCGAC GCTGCAACCGCCGACGCTTTCGACAGAGGAGAAGACGTCCACCTCGAGGG AGAAGGAGTCACCGGAGCTGCCGCGGAAGGAGGCGGAGGGTGCCCGTGTT AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig76053:1..552+

>mRNA_M-pyrifera_M_contig76053.17941.1 ID=mRNA_M-pyrifera_M_contig76053.17941.1|Name=mRNA_M-pyrifera_M_contig76053.17941.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig76053:1..552+ (Macrocystis pyrifera P11B4 male)
TTCAACCTGGAGACGAAGCCTACGATTGGGGTGGAGTTCGCTACACAGAC
CATCAGCGTGGACGGGAAGACGATCAAGGCTCAGATTTGGGACACTGCTG
GTCAGGAGCGGTACCGGGCTATCACGTCGGCTTACTATCGCGGGGCAGTG
GGTGCTCTTTTGGTGTACGACATTTCCTCGCACACCTCCTTCGAGCACAC
GGCGCATTGGCTGCAGGAACTGCGGAATTACGCCGACGAAGGAATCACCG
TCATGCTCGTGGGGAACAAGAGCGATTTGCGCCACGTGCGACAGGTGAAG
ACGGAACACGCCGCAGCATTTGCCAGAAGAGAGCAGATCGCATTCATCGA
AACCTCGGCCCTCGACGCAACCCACGTCAAGCCAGCCTTCGAAACCGTGC
TCAAGGAAATCTACCACCGCGCCAGAAAAGAAGGGAAGGGCGGAGGCGAC
GCTGCAACCGCCGACGCTTTCGACAGAGGAGAAGACGTCCACCTCGAGGG
AGAAGGAGTCACCGGAGCTGCCGCGGAAGGAGGCGGAGGGTGCCCGTGTT
AATTCAACCTGGAGACGAAGCCTACGATTGGGGTGGAGTTCGCTACACAG
ACCATCAGCGTGGACGGGAAGACGATCAAGGCTCAGATTTGGGACACTGC
TGGTCAGGAGCGGTACCGGGCTATCACGTCGGCTTACTATCGCGGGGCAG
TGGGTGCTCTTTTGGTGTACGACATTTCCTCGCACACCTCCTTCGAGCAC
ACGGCGCATTGGCTGCAGGAACTGCGGAATTACGCCGACGAAGGAATCAC
CGTCATGCTCGTGGGGAACAAGAGCGATTTGCGCCACGTGCGACAGGTGA
AGACGGAACACGCCGCAGCATTTGCCAGAAGAGAGCAGATCGCATTCATC
GAAACCTCGGCCCTCGACGCAACCCACGTCAAGCCAGCCTTCGAAACCGT
GCTCAAGGAAATCTACCACCGCGCCAGAAAAGAAGGGAAGGGCGGAGGCG
ACGCTGCAACCGCCGACGCTTTCGACAGAGGAGAAGACGTCCACCTCGAG
GGAGAAGGAGTCACCGGAGCTGCCGCGGAAGGAGGCGGAGGGTGCCCGTG
TTAA
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