mRNA_M-pyrifera_M_contig75856.17894.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75856.17894.1
Unique NamemRNA_M-pyrifera_M_contig75856.17894.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75856.17894.1 vs. uniprot
Match: A0A5K0VCH0_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VCH0_9MAGN)

HSP 1 Score: 52.0 bits (123), Expect = 4.850e-5
Identity = 37/125 (29.60%), Postives = 56/125 (44.80%), Query Frame = 1 
Query:   37 YYGNCLSFIQKELPVEDVQTMPLAELAILVRTLVESYEAQDATDAVNLMKETYFNHGASGLVSLEPPMDYPTSMI-----VSNWAKFRSYDVDFGQGRPLRFVYPLWIAMPGVNIVNTRVGADGD 396
            Y+GN + +   E  VED+   P+   A L+      +EA    DA        F+        L P  D    ++     V +W +F  YDVDFG GRP RF+ P ++ + G+ I+      +GD
Sbjct:  292 YFGNMVLWAWPESRVEDLLAKPIGHAARLI------HEAAARVDADYFKSFIDFSSSKEKTEGLMPSADEGKMVLSPDLEVDSWLRFPFYDVDFGSGRPHRFM-PSYLPVEGLLILVPSFSGNGD 409
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75856.17894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5K0VCH0_9MAGN4.850e-529.60Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75856contigM-pyrifera_M_contig75856:363..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size417
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75856.17894.1prot_M-pyrifera_M_contig75856.17894.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75856 363..824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.2182915-CDS-M-pyrifera_M_contig75856:362..5251622816657.2182915-CDS-M-pyrifera_M_contig75856:362..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75856 363..525 -
1692278102.426209-CDS-M-pyrifera_M_contig75856:362..5251692278102.426209-CDS-M-pyrifera_M_contig75856:362..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75856 363..525 -
1622816657.2368612-CDS-M-pyrifera_M_contig75856:585..8241622816657.2368612-CDS-M-pyrifera_M_contig75856:585..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75856 586..824 -
1692278102.437725-CDS-M-pyrifera_M_contig75856:585..8241692278102.437725-CDS-M-pyrifera_M_contig75856:585..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75856 586..824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816657.2528121-UTR-M-pyrifera_M_contig75856:824..8391622816657.2528121-UTR-M-pyrifera_M_contig75856:824..839Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75856 825..839 -
1692278102.451009-UTR-M-pyrifera_M_contig75856:824..8391692278102.451009-UTR-M-pyrifera_M_contig75856:824..839Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75856 825..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75856.17894.1

>prot_M-pyrifera_M_contig75856.17894.1 ID=prot_M-pyrifera_M_contig75856.17894.1|Name=mRNA_M-pyrifera_M_contig75856.17894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MLGLGSNYYGNCLSFIQKELPVEDVQTMPLAELAILVRTLVESYEAQDAT
DAVNLMKETYFNHGASGLVSLEPPMDYPTSMIVSNWAKFRSYDVDFGQGR
PLRFVYPLWIAMPGVNIVNTRVGADGDAVSEWTY
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mRNA from alignment at M-pyrifera_M_contig75856:363..839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75856.17894.1 ID=mRNA_M-pyrifera_M_contig75856.17894.1|Name=mRNA_M-pyrifera_M_contig75856.17894.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig75856:363..839- (Macrocystis pyrifera P11B4 male)
TTGCGCAGGCGAGCAATGCTGGGCTTGGGCAGCAACTACTACGGCAACTG
CTTGTCATTCATTCAGAAAGAGCTCCCAGTTGAAGACGTGCAGACGATGC
CTTTGGCAGAGCTTGCAATCCTTGTCAGAACCCTCGTCGAGTCCTACGAA
GCCCAAGACGCCACTGACGCGGTAAACCTCATGAAGGAGACGTACTTCAA
CCACGGCGCAAGTGGCCTGGTTTCTCTGGAACCGCCTATGGACTACCCTA
CGAGGTGCGCCTTACCGTTGCAACATTCCGCAGCTCACCTTAGGTACTGA
CGGCCATGTGCCAGCATGATTGTATCGAACTGGGCCAAGTTCCGGTCGTA
TGACGTGGACTTTGGCCAAGGGCGGCCCCTCCGTTTCGTGTACCCACTGT
GGATAGCAATGCCAGGCGTCAACATCGTGAACACACGAGTGGGTGCAGAT
GGCGATGCCGTGAGTGAGTGGACGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75856:363..839-

>mRNA_M-pyrifera_M_contig75856.17894.1 ID=mRNA_M-pyrifera_M_contig75856.17894.1|Name=mRNA_M-pyrifera_M_contig75856.17894.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig75856:363..839- (Macrocystis pyrifera P11B4 male)
ATGCTGGGCTTGGGCAGCAACTACTACGGCAACTGCTTGTCATTCATTCA
GAAAGAGCTCCCAGTTGAAGACGTGCAGACGATGCCTTTGGCAGAGCTTG
CAATCCTTGTCAGAACCCTCGTCGAGTCCTACGAAGCCCAAGACGCCACT
GACGCGGTAAACCTCATGAAGGAGACGTACTTCAACCACGGCGCAAGTGG
CCTGGTTTCTCTGGAACCGCCTATGGACTACCCTACGAGATGCTGGGCTT
GGGCAGCAACTACTACGGCAACTGCTTGTCATTCATTCAGAAAGAGCTCC
CAGTTGAAGACGTGCAGACGATGCCTTTGGCAGAGCTTGCAATCCTTGTC
AGAACCCTCGTCGAGTCCTACGAAGCCCAAGACGCCACTGACGCGGTAAA
CCTCATGAAGGAGACGTACTTCAACCACGGCGCAAGTGGCCTGGTTTCTC
TGGAACCGCCTATGGACTACCCTACGAGCATGATTGTATCGAACTGGGCC
AAGTTCCGGTCGTATGACGTGGACTTTGGCCAAGGGCGGCCCCTCCGTTT
CGTGTACCCACTGTGGATAGCAATGCCAGGCGTCAACATCGTGAACACAC
GAGTGGGTGCAGATGGCGATGCCGTGAGTGAGTGGACGTACCATGATTGT
ATCGAACTGGGCCAAGTTCCGGTCGTATGACGTGGACTTTGGCCAAGGGC
GGCCCCTCCGTTTCGTGTACCCACTGTGGATAGCAATGCCAGGCGTCAAC
ATCGTGAACACACGAGTGGGTGCAGATGGCGATGCCGTGAGTGAGTGGAC
GTAC
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