mRNA_M-pyrifera_M_contig75650.17843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75650.17843.1
Unique NamemRNA_M-pyrifera_M_contig75650.17843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: W2MQM0_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2MQM0_PHYPR)

HSP 1 Score: 97.1 bits (240), Expect = 3.170e-22
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G++  E VT H T   FD +  GL   ++ RL   +LEKEIDP+    R K +  T+   K  + D +  L +K P +T+K      T DPAAG++D+++++YE+GDD+ +RTIA+AW+ S+
Sbjct:   99 SGIDGVGNLPKENVTCHFTKTSFDLKIVGLDN-KNFRLFKQHLEKEIDPAKSSFRVKKNRVTISLHKADKNDTWMNLTAKNPLKTSKP----DTSDPAAGIMDMMKNMYEEGDDEMKRTIAKAWTESR 221          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: H3GHM6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHM6_PHYRM)

HSP 1 Score: 95.5 bits (236), Expect = 1.190e-21
Identity = 50/128 (39.06%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G +  E +T H T   FD +  GL G ++ RL+  +LEKEIDP+   +R K +  T+   K  +   +  L +K P +T+K      T DP+AG++D+++++Y++GDD+ +RTIA+AWS S+
Sbjct:   97 SGIDGVGDLPKENITCHFTKTSFDLKIIGLDG-KNYRLLKQHLEKEIDPAKSSIRAKKNRVTVSLYKADKDTTWMNLTAKNPVKTSKP----DTSDPSAGIMDMMKNMYDEGDDEMKRTIAKAWSESR 219          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A833T3P9_PHYIN (CS domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T3P9_PHYIN)

HSP 1 Score: 92.0 bits (227), Expect = 2.680e-20
Identity = 49/128 (38.28%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G++  E VT H T   FD +  GL   ++ RL+  NLEKEIDP     R K +  T+   K  + + +  L +K P +T+K      T DP+AG++D+++++Y++GDD+ +R+IA+AW+ S+
Sbjct:   99 SGIDGVGNLPQENVTCHFTKTSFDLKIIGLDS-KNYRLVKHNLEKEIDPVKSSFRVKKNRVTISLYKADKNNMWMNLTAKNPLKTSKP----DTSDPSAGIMDMMKNMYDEGDDEMKRSIAKAWTESR 221          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A3M6V8A6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8A6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.550e-20
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G++  E VT   T   FD +  GL   ++ RL+  +LEKEIDP     R K +  T+   K  + + +  L +K P +T+K      T DP AG++D+++++YE+GDD+ +RTIA+AWS S+
Sbjct:   96 SGIDGVGNLPKEKVTCQFTKTSFDLKIIGLEN-KNYRLVKQHLEKEIDPLKSSFRVKKNRITISLHKMEKNNTWMNLTAKNPLKTSKP----DTTDPGAGIMDMMKNMYEEGDDEMKRTIAKAWSESR 218          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A329SNY2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SNY2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.250e-19
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G++  E+VT H T   FD +   L   ++ RL   +LEKEIDP+    R K +  T+   K  + D +  L +K P + +K      T DPAAG++D+++++Y++GD++ +RTIA+AW+ S+
Sbjct:   91 SGIDGVGNLPKESVTCHFTKSSFDLKIIELDN-KNYRLFKQHLEKEIDPAKSSFRVKKNRVTISLHKADKNDTWMNLTAKNPLKASKP----DTSDPAAGIMDMMKNMYDEGDEEMKRTIAKAWTESR 213          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A2D4BPY2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BPY2_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 1.300e-19
Identity = 49/128 (38.28%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+G +  E VT   T   FD +  GL GG++ RL+  +L+KEID S   VR K +   +   K+ +++ +  L +K P +   A       DPAAG++D+++++Y++GDD+ +RTIA+AWS S+
Sbjct:  126 SGIDGVGDLPKENVTCQFTKDSFDLKILGL-GGKNYRLVKHHLDKEIDASKSSVRVKKNRVAITLWKQDKHNSWMNLTAKNPNKPRGA----NASDPAAGIMDMMKEMYDEGDDEMKRTIAKAWSESR 248          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A6A4FPS2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FPS2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.950e-19
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRD---VRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SGVDG+G++  E VT H T   FD +  GL         RL   +LEKEIDP+    R K +  T+   K  + + +  L +K P +++K      T DPAAG++D+++++Y +GDD+ +RTIA+AWS S+
Sbjct:   97 SGVDGVGNLPKENVTCHFTKTSFDLKIIGLENKNYRCIARLFKQHLEKEIDPAKSSFRVKKNRVTISLHKADKDNTWMNLTAKNPLKSSKP----DTSDPAAGIMDMMKNMYAEGDDEMKRTIAKAWSESR 223          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A3F2S4P0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S4P0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.710e-18
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAW--SRSKGGSIA 399
            SG+DG+G++  E V    T   FD +  GL G ++ RLI  NLEKEIDP     R K +  T+   K  + + +  L +K P    K   K  + DP AG++ +++D+Y+ GDD+ +RTIA+AW  SR K G+ A
Sbjct:  101 SGIDGVGALPKENVACQFTKTSFDLKIIGL-GNKNYRLIKQNLEKEIDPKRSSFRVKKNRVTISLIKADKDNTWMNLTAKNP---TKGSSKPDSADPTAGIMGMMKDMYDQGDDEMKRTIAKAWTESRDKNGATA 231          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A484EEV0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEV0_BRELC)

HSP 1 Score: 87.0 bits (214), Expect = 2.230e-18
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SGV+G+G++  E VT H     FD +  GL   ++ RL+  +LEKEIDP    +R K +  T+  RK  + + +  L +K   +++K      + DPAAG++D+++++Y++GDD  +RTIA+AWS S+
Sbjct:   99 SGVEGVGNLPKENVTCHFGKSSFDLKIIGLDN-KNYRLVKQHLEKEIDPLKSSIRVKKNRVTILLRKADKNNTWMNLTAKNSLKSSKP----DSSDPAAGIMDMMKNMYDEGDDDMKRTIAKAWSESR 221          
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Match: A0A6G0XU43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU43_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.530e-17
Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPSDIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAGVVDVLRDLYEDGDDKTRRTIAEAWSRSK 384
            SG+DG+GS+    +T   T   FD + K L  G + RL+  NL+KEIDP   +   K +  T+   K      +  L SK    ++K   K  + DP+AG++D+++++Y++GDD+ +RTIA+AWS S+
Sbjct:   95 SGIDGVGSLPSNQLTCDFTTRSFDLKIKQL-NGNNYRLVRYNLDKEIDPKKSKFVAKKNRVTITLIKSDTNSTWMNLTSK----SSKPTDKPASTDPSAGIMDMMKNMYDEGDDEMKRTIAKAWSESR 217          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75650.17843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W2MQM0_PHYPR3.170e-2240.63Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
H3GHM6_PHYRM1.190e-2139.06Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A833T3P9_PHYIN2.680e-2038.28CS domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A3M6V8A6_9STRA3.550e-2039.06Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A329SNY2_9STRA1.250e-1937.50Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2D4BPY2_PYTIN1.300e-1938.28Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A4FPS2_9STRA5.950e-1938.93Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A3F2S4P0_9STRA1.710e-1839.26Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A484EEV0_BRELC2.230e-1837.50Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6G0XU43_9STRA4.530e-1736.72Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75650contigM-pyrifera_M_contig75650:1..405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog4792.ETI38538
KEGG koko:K04507
KEGG Pathwayko04310,map04310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CS domain
EggNOG OGs3QE36@4776,KOG3260@1,KOG3260@2759
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-01_006980.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.4179516-CDS-M-pyrifera_M_contig75650:0..4051622816654.4179516-CDS-M-pyrifera_M_contig75650:0..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75650 1..405 +
1692278100.9690645-CDS-M-pyrifera_M_contig75650:0..4051692278100.9690645-CDS-M-pyrifera_M_contig75650:0..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75650 1..405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75650.17843.1prot_M-pyrifera_M_contig75650.17843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75650 1..405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75650.17843.1

>prot_M-pyrifera_M_contig75650.17843.1 ID=prot_M-pyrifera_M_contig75650.17843.1|Name=mRNA_M-pyrifera_M_contig75650.17843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
SGVDGIGSVSDEAVTLHATPFGFDFQAKGLPGGRDVRLIVDNLEKEIDPS
DIRVRRKADSATLRFRKKRQYDRFFKLISKKPRRTAKAKKKSTTDDPAAG
VVDVLRDLYEDGDDKTRRTIAEAWSRSKGGSIAST
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mRNA from alignment at M-pyrifera_M_contig75650:1..405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75650.17843.1 ID=mRNA_M-pyrifera_M_contig75650.17843.1|Name=mRNA_M-pyrifera_M_contig75650.17843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig75650:1..405+ (Macrocystis pyrifera P11B4 male)
TCTGGGGTGGATGGAATCGGAAGTGTATCGGATGAAGCAGTTACACTGCA TGCAACTCCTTTCGGATTCGATTTCCAAGCAAAAGGCTTGCCAGGAGGAC GGGATGTTCGTTTGATAGTTGACAATTTGGAGAAGGAAATTGACCCTTCT GATATTCGTGTGCGTCGAAAAGCTGACAGTGCAACTCTTCGATTTCGCAA AAAGCGCCAATATGACCGATTCTTTAAGCTCATTTCCAAGAAACCACGCC GCACTGCCAAGGCAAAGAAGAAGAGCACAACTGACGATCCAGCTGCAGGC GTGGTTGACGTGCTCCGTGATCTCTATGAGGATGGAGATGATAAAACCAG ACGCACCATCGCAGAAGCATGGAGCAGAAGCAAGGGAGGAAGCATTGCGT CCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75650:1..405+

>mRNA_M-pyrifera_M_contig75650.17843.1 ID=mRNA_M-pyrifera_M_contig75650.17843.1|Name=mRNA_M-pyrifera_M_contig75650.17843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig75650:1..405+ (Macrocystis pyrifera P11B4 male)
TCTGGGGTGGATGGAATCGGAAGTGTATCGGATGAAGCAGTTACACTGCA
TGCAACTCCTTTCGGATTCGATTTCCAAGCAAAAGGCTTGCCAGGAGGAC
GGGATGTTCGTTTGATAGTTGACAATTTGGAGAAGGAAATTGACCCTTCT
GATATTCGTGTGCGTCGAAAAGCTGACAGTGCAACTCTTCGATTTCGCAA
AAAGCGCCAATATGACCGATTCTTTAAGCTCATTTCCAAGAAACCACGCC
GCACTGCCAAGGCAAAGAAGAAGAGCACAACTGACGATCCAGCTGCAGGC
GTGGTTGACGTGCTCCGTGATCTCTATGAGGATGGAGATGATAAAACCAG
ACGCACCATCGCAGAAGCATGGAGCAGAAGCAAGGGAGGAAGCATTGCGT
CCACCTCTGGGGTGGATGGAATCGGAAGTGTATCGGATGAAGCAGTTACA
CTGCATGCAACTCCTTTCGGATTCGATTTCCAAGCAAAAGGCTTGCCAGG
AGGACGGGATGTTCGTTTGATAGTTGACAATTTGGAGAAGGAAATTGACC
CTTCTGATATTCGTGTGCGTCGAAAAGCTGACAGTGCAACTCTTCGATTT
CGCAAAAAGCGCCAATATGACCGATTCTTTAAGCTCATTTCCAAGAAACC
ACGCCGCACTGCCAAGGCAAAGAAGAAGAGCACAACTGACGATCCAGCTG
CAGGCGTGGTTGACGTGCTCCGTGATCTCTATGAGGATGGAGATGATAAA
ACCAGACGCACCATCGCAGAAGCATGGAGCAGAAGCAAGGGAGGAAGCAT
TGCGTCCACC
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