mRNA_M-pyrifera_M_contig75333.17782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75333.17782.1
Unique NamemRNA_M-pyrifera_M_contig75333.17782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: M2Y549_GALSU (Probable ATP-dependent transporter ycf16 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y549_GALSU)

HSP 1 Score: 125 bits (313), Expect = 2.980e-31
Identity = 56/101 (55.45%), Postives = 80/101 (79.21%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKR 303
            SLLF DEPTSGLD++ A+ V++A+ +LA  GR V+ TIHQP SD++++FD+L+L++EG  +YFGP +DAV+YF R G  ++CP+H+NPADFFL  +S   R
Sbjct:  207 SLLFLDEPTSGLDAFNARNVMQALLKLAQSGRTVITTIHQPRSDIFNMFDMLMLLSEGKVMYFGPAKDAVSYFTRIG--YSCPEHYNPADFFLDTISRDGR 305          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A812W3M3_9DINO (W protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812W3M3_9DINO)

HSP 1 Score: 122 bits (307), Expect = 2.020e-30
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            S+LF DEPTSGLDS +A +VV+ M  LA  GR V++TIHQPSS+ YSLFD LLL+  G  VY+G R+ AV YFA+FG  +TCP+  NPADFF++ L+    +E
Sbjct:  188 SVLFADEPTSGLDSDMAYQVVKMMKALAASGRTVISTIHQPSSETYSLFDKLLLMWHGRTVYYGSRDGAVEYFAQFGPKYTCPEFTNPADFFIKMLAVQPGDE 290          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A1S3JS28_LINUN (LOW QUALITY PROTEIN: protein white-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JS28_LINUN)

HSP 1 Score: 116 bits (291), Expect = 4.610e-30
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    4 LLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            L+FCDEPTSGLDSY+A+ VV+ +  +A  G+ V+ TIHQPSS+V+++FD +LL+AEG   Y GP +D + YF   G  +TCP ++NPADFF+  L+    EE
Sbjct:  149 LMFCDEPTSGLDSYMAQNVVDTLKRMAATGKTVVCTIHQPSSEVFAMFDRILLMAEGRVAYMGPAKDTLEYFKSGG--FTCPVNYNPADFFIHTLAIVPGEE 248          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: W4FWL1_9STRA (ABC transporter domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWL1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.910e-30
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKRE 306
            SLLF DEPTSGLDS++A+ VV+ M +LA  GR +LATIHQPSS+++SLFD L L++ G  VY+GP  D+VAYFA  G  + CP++ NP D+F+R++ +   E
Sbjct:  221 SLLFVDEPTSGLDSFMAESVVQIMQKLAREGRTILATIHQPSSELFSLFDQLYLLSNGRTVYYGPAADSVAYFASIG--YPCPNYMNPTDYFMRQIIQLDAE 320          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A8B7XLD1_ACAPL (protein white-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XLD1_ACAPL)

HSP 1 Score: 120 bits (301), Expect = 1.440e-29
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    4 LLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            LLFCDEPTSGLDSY+++ ++  + +LAL G  +L TIHQPSSD+YS+FD L+L+A+G C Y G  + AVAYFAR G  +  PD + PADFF+  LS    EE
Sbjct:  268 LLFCDEPTSGLDSYMSETLISMLRQLALEGHTILCTIHQPSSDIYSMFDRLILIADGRCAYQGDVDKAVAYFARLG--YQSPDDYCPADFFIDTLSIRPGEE 367          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A1Y1I2G9_KLENI (ABC transporter G family n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2G9_KLENI)

HSP 1 Score: 119 bits (297), Expect = 4.870e-29
Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKRE 306
            S++F DEPTSGLDS+ A  V+ ++G LA +GR +++TIHQP S +Y+LF+ LLL++EG  +YFGP   AVAYF   G   TCP HFNPADFF+ ++S   R+
Sbjct:  232 SMIFLDEPTSGLDSFQALNVMSSLGALADKGRTIISTIHQPRSSIYALFEDLLLLSEGEMIYFGPASQAVAYFDSKGL--TCPQHFNPADFFMDKISLDSRD 331          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A7M7PAE7_STRPU (ABC transporter domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PAE7_STRPU)

HSP 1 Score: 118 bits (296), Expect = 6.500e-29
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            SL+FCDEPTSGLDSY+A+ VVE +  LA  GR +L+TIHQPSS+V+++FD +LL+AEG   + G  ++A+ +F+  G  + CP ++NPADFF++ L+    EE
Sbjct:  226 SLMFCDEPTSGLDSYMAQNVVETLRGLASEGRTILSTIHQPSSEVFAMFDRILLIAEGRTAFIGTTKEAIDFFSNLG--YVCPKNYNPADFFIQTLAIVPGEE 326          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A7M7T2N3_STRPU (ABC transporter domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T2N3_STRPU)

HSP 1 Score: 118 bits (296), Expect = 6.750e-29
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            SL+FCDEPTSGLDSY+A+ VVE +  LA  GR +L+TIHQPSS+V+++FD +LL+AEG   + G  ++A+ +F+  G  + CP ++NPADFF++ L+    EE
Sbjct:  250 SLMFCDEPTSGLDSYMAQNVVETLRGLASEGRTILSTIHQPSSEVFAMFDRILLIAEGRTAFIGTTKEAIDFFSNLG--YVCPKNYNPADFFIQTLAIVPGEE 350          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A7R9GEP6_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GEP6_9CRUS)

HSP 1 Score: 113 bits (282), Expect = 7.430e-29
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 LLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAKREE 309
            LLFCDEPTSGLDS++A+ VV  M  LA +G+ ++ATIHQPSS++Y++FD LLL+AEG   Y G  + A  +F R G  + CP +FNPADFF+  L+    +E
Sbjct:   31 LLFCDEPTSGLDSFMAQNVVGVMKALAEKGKTIVATIHQPSSELYAMFDRLLLMAEGRTAYLGDVDGAFDFFNRHG--YACPPNFNPADFFIHTLAIVPGDE 130          
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Match: A0A2P2IEZ2_9CRUS (Protein white-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IEZ2_9CRUS)

HSP 1 Score: 112 bits (281), Expect = 8.710e-29
Identity = 51/96 (53.12%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    4 LLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFDLLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLS 291
            L+ CDEPTSGLDS++A+ +VEAM ++A +GR ++ TIHQPSS+V++LFD +LL+AEG   + G   DA+ +FAR  +D  CP ++NPADFF+  L+
Sbjct:   20 LMVCDEPTSGLDSFMAQTMVEAMQKMAQQGRTIICTIHQPSSEVFALFDRVLLMAEGRVAFLGLTTDAIDFFAR--SDQICPSNYNPADFFIMTLA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75333.17782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2Y549_GALSU2.980e-3155.45Probable ATP-dependent transporter ycf16 n=2 Tax=G... [more]
A0A812W3M3_9DINO2.020e-3057.28W protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23098... [more]
A0A1S3JS28_LINUN4.610e-3051.96LOW QUALITY PROTEIN: protein white-like n=1 Tax=Li... [more]
W4FWL1_9STRA6.910e-3054.90ABC transporter domain-containing protein n=5 Tax=... [more]
A0A8B7XLD1_ACAPL1.440e-2955.88protein white-like isoform X1 n=2 Tax=Acanthaster ... [more]
A0A1Y1I2G9_KLENI4.870e-2953.92ABC transporter G family n=1 Tax=Klebsormidium nit... [more]
A0A7M7PAE7_STRPU6.500e-2951.46ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7M7T2N3_STRPU6.750e-2951.46ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7R9GEP6_9CRUS7.430e-2952.94Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]
A0A2P2IEZ2_9CRUS8.710e-2953.13Protein white-like (Fragment) n=1 Tax=Hirondellea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75333contigM-pyrifera_M_contig75333:243..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog130081.XP_005707618.1
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.443743-CDS-M-pyrifera_M_contig75333:242..5511622816651.443743-CDS-M-pyrifera_M_contig75333:242..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75333 243..551 +
1692278099.398252-CDS-M-pyrifera_M_contig75333:242..5511692278099.398252-CDS-M-pyrifera_M_contig75333:242..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75333 243..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75333.17782.1prot_M-pyrifera_M_contig75333.17782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75333 243..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75333.17782.1

>prot_M-pyrifera_M_contig75333.17782.1 ID=prot_M-pyrifera_M_contig75333.17782.1|Name=mRNA_M-pyrifera_M_contig75333.17782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
SLLFCDEPTSGLDSYLAKEVVEAMGELALRGRAVLATIHQPSSDVYSLFD
LLLLVAEGHCVYFGPREDAVAYFARFGADWTCPDHFNPADFFLRRLSEAK
REE
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mRNA from alignment at M-pyrifera_M_contig75333:243..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75333.17782.1 ID=mRNA_M-pyrifera_M_contig75333.17782.1|Name=mRNA_M-pyrifera_M_contig75333.17782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig75333:243..551+ (Macrocystis pyrifera P11B4 male)
TCTCTCTTGTTTTGCGATGAGCCCACGAGCGGTCTGGACAGCTACCTGGC GAAGGAGGTGGTGGAGGCGATGGGGGAGCTGGCGCTGCGTGGCCGTGCCG TGTTGGCGACGATCCATCAGCCTAGCTCCGACGTGTACTCGCTCTTCGAC CTGCTGTTGCTGGTGGCAGAGGGGCATTGCGTGTACTTTGGGCCTCGCGA AGACGCAGTTGCCTACTTTGCCCGGTTTGGCGCAGATTGGACCTGTCCAG ACCACTTCAACCCCGCCGATTTCTTCCTCCGACGCCTCTCAGAAGCAAAA CGCGAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75333:243..551+

>mRNA_M-pyrifera_M_contig75333.17782.1 ID=mRNA_M-pyrifera_M_contig75333.17782.1|Name=mRNA_M-pyrifera_M_contig75333.17782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig75333:243..551+ (Macrocystis pyrifera P11B4 male)
TCTCTCTTGTTTTGCGATGAGCCCACGAGCGGTCTGGACAGCTACCTGGC
GAAGGAGGTGGTGGAGGCGATGGGGGAGCTGGCGCTGCGTGGCCGTGCCG
TGTTGGCGACGATCCATCAGCCTAGCTCCGACGTGTACTCGCTCTTCGAC
CTGCTGTTGCTGGTGGCAGAGGGGCATTGCGTGTACTTTGGGCCTCGCGA
AGACGCAGTTGCCTACTTTGCCCGGTTTGGCGCAGATTGGACCTGTCCAG
ACCACTTCAACCCCGCCGATTTCTTCCTCCGACGCCTCTCAGAAGCAAAA
CGCGAAGAATCTCTCTTGTTTTGCGATGAGCCCACGAGCGGTCTGGACAG
CTACCTGGCGAAGGAGGTGGTGGAGGCGATGGGGGAGCTGGCGCTGCGTG
GCCGTGCCGTGTTGGCGACGATCCATCAGCCTAGCTCCGACGTGTACTCG
CTCTTCGACCTGCTGTTGCTGGTGGCAGAGGGGCATTGCGTGTACTTTGG
GCCTCGCGAAGACGCAGTTGCCTACTTTGCCCGGTTTGGCGCAGATTGGA
CCTGTCCAGACCACTTCAACCCCGCCGATTTCTTCCTCCGACGCCTCTCA
GAAGCAAAACGCGAAGAA
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