mRNA_M-pyrifera_M_contig75039.17727.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75039.17727.1
Unique NamemRNA_M-pyrifera_M_contig75039.17727.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig75039.17727.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.150e-18
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 LGRGYIDRELLKARQAQRYFLHTVTPAAVLIQSQWRGYTKRRDLAE 138
            +GRGYIDREL+KAR+AQR+FLHT+TPA VLIQSQWRGYT+RRDLA+
Sbjct: 1376 VGRGYIDRELVKARRAQRHFLHTITPACVLIQSQWRGYTRRRDLAK 1421
[Close]
BLAST of mRNA_M-pyrifera_M_contig75039.17727.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.940e-18
Identity = 37/46 (80.43%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 LGRGYIDRELLKARQAQRYFLHTVTPAAVLIQSQWRGYTKRRDLAE 138
            +GRGYIDREL+KAR++QR+FLHT+TPA VLIQSQWRGYT+RRDLA+
Sbjct: 1346 VGRGYIDRELVKARRSQRHFLHTITPACVLIQSQWRGYTRRRDLAK 1391
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75039.17727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC52_9PHAE1.150e-1882.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH0_ECTSI2.940e-1880.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75039contigM-pyrifera_M_contig75039:278..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog2880.D7FMH0
KEGG koko:K16743
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Short calmodulin-binding motif containing conserved Ile and Gln residues.
EggNOG OGs29C0P@1,2RJ48@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.6092951-CDS-M-pyrifera_M_contig75039:277..4181622816648.6092951-CDS-M-pyrifera_M_contig75039:277..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75039 278..418 +
1692278097.878113-CDS-M-pyrifera_M_contig75039:277..4181692278097.878113-CDS-M-pyrifera_M_contig75039:277..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75039 278..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75039.17727.1prot_M-pyrifera_M_contig75039.17727.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75039 278..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75039.17727.1

>prot_M-pyrifera_M_contig75039.17727.1 ID=prot_M-pyrifera_M_contig75039.17727.1|Name=mRNA_M-pyrifera_M_contig75039.17727.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
LGRGYIDRELLKARQAQRYFLHTVTPAAVLIQSQWRGYTKRRDLAE*
back to top

mRNA from alignment at M-pyrifera_M_contig75039:278..418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75039.17727.1 ID=mRNA_M-pyrifera_M_contig75039.17727.1|Name=mRNA_M-pyrifera_M_contig75039.17727.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig75039:278..418+ (Macrocystis pyrifera P11B4 male)
CTTGGTCGGGGGTATATCGACAGAGAGCTGCTTAAGGCTAGGCAAGCGCA
GCGGTATTTTTTGCACACGGTAACGCCTGCCGCGGTTCTGATCCAGAGCC
AGTGGAGGGGGTACACCAAACGAAGAGACCTTGCCGAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75039:278..418+

>mRNA_M-pyrifera_M_contig75039.17727.1 ID=mRNA_M-pyrifera_M_contig75039.17727.1|Name=mRNA_M-pyrifera_M_contig75039.17727.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig75039:278..418+ (Macrocystis pyrifera P11B4 male)
CTTGGTCGGGGGTATATCGACAGAGAGCTGCTTAAGGCTAGGCAAGCGCA
GCGGTATTTTTTGCACACGGTAACGCCTGCCGCGGTTCTGATCCAGAGCC
AGTGGAGGGGGTACACCAAACGAAGAGACCTTGCCGAGTGACTTGGTCGG
GGGTATATCGACAGAGAGCTGCTTAAGGCTAGGCAAGCGCAGCGGTATTT
TTTGCACACGGTAACGCCTGCCGCGGTTCTGATCCAGAGCCAGTGGAGGG
GGTACACCAAACGAAGAGACCTTGCCGAGTGA
back to top