mRNA_M-pyrifera_M_contig74133.17556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74133.17556.1
Unique NamemRNA_M-pyrifera_M_contig74133.17556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: E3T502_CROVB (Putative ABC-type amino acid transporter n=1 Tax=Cafeteria roenbergensis virus (strain BV-PW1) TaxID=693272 RepID=E3T502_CROVB)

HSP 1 Score: 115 bits (288), Expect = 1.460e-26
Identity = 68/179 (37.99%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   19 LPVLLTAMATVNLSSLDLPQPINGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKWV-APPPSQRDLVAEENLRGNALAIVGGIFLGIAIV 552
            LP +LTA+ T+ L   +    IN   DL GKTV+V  ASTA  YL  +G+ IK   + S+ + L++F NG GDAVIYD+ +L  +   +      GY +VGD    + YG+    +N  LR A++ A+L +W    +  L  KW    PPS    V   N +  AL I+G   LG+ IV
Sbjct:  262 LPPILTALITMILVINNSSGTINSVDDLPGKTVIVPRASTALTYLSFYGRDIKQIQVDSVEEMLNRFANGEGDAVIYDWPILQNFVNTQKSVSTVGYQLVGDVFEEQQYGIAISQNNTILRAAINRAVLLSWETPEFKTLESKWFKTSPPSINQQVDNANNQLIALLILGSFILGLGIV 440          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A5A8CKK8_CAFRO (PBPe domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKK8_CAFRO)

HSP 1 Score: 83.6 bits (205), Expect = 3.230e-15
Identity = 46/146 (31.51%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   19 LPVLLTAMATVNLSSLDLPQPINGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEA-KKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKWV 453
            L +++TA+ TV+L +      ++ F DL GKT+L+ EA+T E Y+  +G GI +    +I  AL +F  G  +A++YD  +L+ +  ++A   G   +A+VG+ +  + YG+      ++LR++LD AIL  +       L  +W+
Sbjct:  232 LKIVVTAIVTVSLQAAASSMAVSSFSDLSGKTMLMPEATTGEIYVNRNGVGITMIPAENIDSALVRFAAGESEAMLYDQPILSAFIGRDAVTNGAKRFALVGEILERQQYGIALTPGLDNLRKSLDKAILAVYGTTEVAELRARWL 377          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A5A8CSD5_CAFRO (PBPe domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CSD5_CAFRO)

HSP 1 Score: 83.6 bits (205), Expect = 3.480e-15
Identity = 46/146 (31.51%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   19 LPVLLTAMATVNLSSLDLPQPINGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEA-KKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKWV 453
            L +++TA+ TV+L +      ++ F DL GKT+L+ EA+T E Y+  +G GI +    +I  AL +F  G  +A++YD  +L+ +  ++A   G   +A+VG+ +  + YG+      ++LR++LD AIL  +       L  +W+
Sbjct:  264 LKIVVTAIVTVSLQAAASSMAVSSFSDLSGKTMLMPEATTGEIYVNRNGVGITMIPAENIDSALVRFAAGESEAMLYDQPILSAFIGRDAVTNGAKRFALVGEILERQQYGIALTPGLDNLRKSLDKAILAVYGTTEVAELRARWL 409          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: UPI00094F1A2A (basic amino acid ABC transporter substrate-binding protein n=1 Tax=Colibacter massiliensis TaxID=1852379 RepID=UPI00094F1A2A)

HSP 1 Score: 64.7 bits (156), Expect = 4.170e-9
Identity = 40/130 (30.77%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKWVAPPPSQ 471
            INGF DLQGKTV     +    Y + HG  +K     S +    +   G  DAV+ D AV  ++ +Q    G++   +VG+PI      +  +  N DL+E ++ A+    A  +Y  L  KW    P +
Sbjct:  132 INGFDDLQGKTVGAQVGTKGVDYAQEHGATVK--QYDSNSQGWMELEAGTCDAVVIDNAVAMYYLKQG---GSDKLKMVGEPIISSGMSLAINKDNKDLQEKVNKAMADLKADGTYAKLYKKWFGTEPQE 256          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A847YUX4_9FIRM (Transporter substrate-binding domain-containing protein n=1 Tax=Veillonellaceae bacterium TaxID=2049049 RepID=A0A847YUX4_9FIRM)

HSP 1 Score: 60.1 bits (144), Expect = 3.220e-8
Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  100 LQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW 450
            L GK V   + ST+E  ++       V S  +  +A      G  +AV  D ++L      + K G+  +A+VG+ I+PE YG+   ++ +D R+ ++ A+++ WA   Y  + +KW
Sbjct:    1 LAGKKVGSVKGSTSEQNVKKAQPECTVISFETYPEAFLALKQGKVEAVTTDESILVGLQNSDDKPGD--FAIVGEYISPEPYGLGVAENESDFRDFVNIALMEMWASGEYQKIYEKW 115          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A7K3NIQ5_9DELT (ABC transporter substrate-binding protein n=3 Tax=root TaxID=1 RepID=A0A7K3NIQ5_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 8.190e-8
Identity = 35/123 (28.46%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW 450
            I G  DL GK V   + ST+E  ++       V S  +  +A      G  +AV  D ++L      + K  +  +A+VG+ I+PE YG+   ++++D R+ ++ A+++ WA   Y  +  KW
Sbjct:  132 IKGVKDLAGKKVGSVKGSTSEQNVKKAQPECTVISFETYPEAFLALKQGKVEAVTTDESILVGLQNSDDKPAD--FAIVGEYISPEPYGLGLIENDSDFRDFVNVALMEMWASGEYQKIYAKW 252          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A847UTL3_9DELT (Transporter substrate-binding domain-containing protein n=1 Tax=Desulfovibrionales bacterium TaxID=2448050 RepID=A0A847UTL3_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 9.980e-8
Identity = 35/123 (28.46%), Postives = 57/123 (46.34%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW 450
            I    DL GK V   + ST+E  ++      +V S  +  +A      G   AV  D  +L      +    N  +A+VGD IA E YG+   ++++D R+ ++  +++ W    Y  L DKW
Sbjct:   18 IKSVADLAGKKVGSAKGSTSEQNIKKAQPACEVVSFETYPEAFLAMKQGKVVAVTTDAPILLGIRNSDENPDN--FAIVGDHIAAEPYGIGLPENDSDFRDFVNITLMEMWKSGEYQKLYDKW 138          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: UPI001FACC4B6 (ABC transporter substrate-binding protein n=2 Tax=unclassified Fundidesulfovibrio TaxID=2905137 RepID=UPI001FACC4B6)

HSP 1 Score: 58.5 bits (140), Expect = 7.320e-7
Identity = 33/123 (26.83%), Postives = 60/123 (48.78%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW 450
            I    DL GK +   + ST+E   +       + S  +  +A      G  +AV  D A+L     ++ K  +  +AVVG+ I+ E YG+   ++ + LR+A++ A++  W +  Y  + +KW
Sbjct:  132 IKSIKDLAGKKIGSAKGSTSEKNAKAAQPQATIISFETYPEAFLALKQGKVEAVTTDEAILHGLRNKDDKPDD--FAVVGEAISAEPYGLGIVENESKLRDAINFALMDLWTEGKYQQIYNKW 252          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A124F936_9DELT (Amino acid ABC transporter substrate-binding protein, PAAT family n=2 Tax=Desulfonauticus TaxID=206664 RepID=A0A124F936_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 3.500e-6
Identity = 34/126 (26.98%), Postives = 56/126 (44.44%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKWVAP 459
            I    DL GK V   + ST+E  ++       V S      A      G   AV  D  +L     + +    + YA+VGD I+ E YG+   ++++D R+ ++ A++  W    Y  + +KW  P
Sbjct:  133 IKSVADLAGKKVGTAKGSTSEKNIKEAQPKCIVLSFEGYPQAFLALQQGKVAAVTTDSTILL--GLKNSAPNPDDYAIVGDYISSEPYGIGLPENDSDFRDFVNRALVDMWNSGEYQKIYNKWFGP 256          
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Match: A0A7C8LW20_9DELT (ABC transporter glutamine-binding protein GlnH n=4 Tax=Halodesulfovibrio TaxID=1912771 RepID=A0A7C8LW20_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-5
Identity = 32/123 (26.02%), Postives = 54/123 (43.90%), Query Frame = 1
Query:   82 INGFGDLQGKTVLVGEASTAEAYLETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGNNGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW 450
            I    DL GK +   + ST+E  ++T     +V S      A      G   AV  D  +L     + +      +A+VGD IA E YG+   ++++D R+ ++  +   W    Y  + +KW
Sbjct:  131 IKSAADLAGKKIATVKGSTSEKNIKTAQPKARVISFDEYPQAFLALKQGKAVAVTTDSTILL--GLKNSAPDPTKWAIVGDYIAAEPYGLGIAENDSDFRDLINKTLNDLWRSGEYQKIYNKW 251          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74133.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
E3T502_CROVB1.460e-2637.99Putative ABC-type amino acid transporter n=1 Tax=C... [more]
A0A5A8CKK8_CAFRO3.230e-1531.51PBPe domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A5A8CSD5_CAFRO3.480e-1531.51PBPe domain-containing protein n=3 Tax=Cafeteria r... [more]
UPI00094F1A2A4.170e-930.77basic amino acid ABC transporter substrate-binding... [more]
A0A847YUX4_9FIRM3.220e-828.21Transporter substrate-binding domain-containing pr... [more]
A0A7K3NIQ5_9DELT8.190e-828.46ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A847UTL3_9DELT9.980e-828.46Transporter substrate-binding domain-containing pr... [more]
UPI001FACC4B67.320e-726.83ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A124F936_9DELT3.500e-626.98Amino acid ABC transporter substrate-binding prote... [more]
A0A7C8LW20_9DELT1.190e-526.02ABC transporter glutamine-binding protein GlnH n=4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74133contigM-pyrifera_M_contig74133:396..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue4.6e-10
Seed eggNOG ortholog1196028.ALEF01000047_gene126
Preferred nameglnH
KEGG koko:K02030,ko:K10036
KEGG TC3.A.1.3,3.A.1.3.2
KEGG Pathwayko02010,map02010
KEGG ModuleM00227,M00236
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ligated ion channel L-glutamate- and glycine-binding site
EggNOG OGs1TQUG@1239,4C5E3@84406,4I2WJ@91061,COG0834@1,COG0834@2
COG Functional cat.ET
Best tax levelVirgibacillus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816639.3057024-CDS-M-pyrifera_M_contig74133:395..9951622816639.3057024-CDS-M-pyrifera_M_contig74133:395..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74133 396..995 -
1692278092.5668936-CDS-M-pyrifera_M_contig74133:395..9951692278092.5668936-CDS-M-pyrifera_M_contig74133:395..995Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74133 396..995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74133.17556.1prot_M-pyrifera_M_contig74133.17556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74133 396..995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74133.17556.1

>prot_M-pyrifera_M_contig74133.17556.1 ID=prot_M-pyrifera_M_contig74133.17556.1|Name=mRNA_M-pyrifera_M_contig74133.17556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
LLLQVLLPVLLTAMATVNLSSLDLPQPINGFGDLQGKTVLVGEASTAEAY
LETHGQGIKVSSLPSIADALDKFGNGVGDAVIYDYAVLTWWARQEAKKGN
NGYAVVGDPIAPETYGMPTHDSNNDLREALDGAILQTWAQESYDGLIDKW
VAPPPSQRDLVAEENLRGNALAIVGGIFLGIAIVAILTLLLRNFLCPKKK
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mRNA from alignment at M-pyrifera_M_contig74133:396..995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74133.17556.1 ID=mRNA_M-pyrifera_M_contig74133.17556.1|Name=mRNA_M-pyrifera_M_contig74133.17556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig74133:396..995- (Macrocystis pyrifera P11B4 male)
CTTCTGCTGCAGGTTCTTCTTCCTGTGCTATTGACAGCAATGGCGACAGT AAATTTAAGCAGCCTAGACCTCCCTCAACCTATCAACGGGTTTGGAGACT TGCAAGGGAAGACCGTGTTAGTTGGTGAGGCAAGCACTGCAGAAGCATAC TTGGAGACACATGGCCAAGGGATCAAAGTGAGCAGTTTGCCGAGTATTGC TGATGCCTTGGACAAGTTTGGGAATGGTGTTGGCGATGCAGTGATTTATG ACTACGCCGTGTTGACGTGGTGGGCACGGCAGGAAGCCAAGAAGGGGAAC AATGGGTATGCAGTCGTGGGAGACCCAATCGCACCAGAAACGTATGGAAT GCCGACGCACGACTCGAACAATGACTTGCGGGAGGCACTTGACGGAGCCA TCCTGCAGACGTGGGCGCAAGAGTCGTACGATGGCCTCATCGACAAGTGG GTGGCGCCTCCTCCTTCGCAGCGTGACCTTGTGGCGGAAGAAAACCTCCG TGGCAATGCGCTTGCCATTGTGGGAGGCATTTTTCTCGGGATTGCGATCG TCGCCATCCTCACCCTCTTGCTCCGCAATTTTCTCTGTCCCAAGAAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74133:396..995-

>mRNA_M-pyrifera_M_contig74133.17556.1 ID=mRNA_M-pyrifera_M_contig74133.17556.1|Name=mRNA_M-pyrifera_M_contig74133.17556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig74133:396..995- (Macrocystis pyrifera P11B4 male)
CTTCTGCTGCAGGTTCTTCTTCCTGTGCTATTGACAGCAATGGCGACAGT
AAATTTAAGCAGCCTAGACCTCCCTCAACCTATCAACGGGTTTGGAGACT
TGCAAGGGAAGACCGTGTTAGTTGGTGAGGCAAGCACTGCAGAAGCATAC
TTGGAGACACATGGCCAAGGGATCAAAGTGAGCAGTTTGCCGAGTATTGC
TGATGCCTTGGACAAGTTTGGGAATGGTGTTGGCGATGCAGTGATTTATG
ACTACGCCGTGTTGACGTGGTGGGCACGGCAGGAAGCCAAGAAGGGGAAC
AATGGGTATGCAGTCGTGGGAGACCCAATCGCACCAGAAACGTATGGAAT
GCCGACGCACGACTCGAACAATGACTTGCGGGAGGCACTTGACGGAGCCA
TCCTGCAGACGTGGGCGCAAGAGTCGTACGATGGCCTCATCGACAAGTGG
GTGGCGCCTCCTCCTTCGCAGCGTGACCTTGTGGCGGAAGAAAACCTCCG
TGGCAATGCGCTTGCCATTGTGGGAGGCATTTTTCTCGGGATTGCGATCG
TCGCCATCCTCACCCTCTTGCTCCGCAATTTTCTCTGTCCCAAGAAGAAG
CTTCTGCTGCAGGTTCTTCTTCCTGTGCTATTGACAGCAATGGCGACAGT
AAATTTAAGCAGCCTAGACCTCCCTCAACCTATCAACGGGTTTGGAGACT
TGCAAGGGAAGACCGTGTTAGTTGGTGAGGCAAGCACTGCAGAAGCATAC
TTGGAGACACATGGCCAAGGGATCAAAGTGAGCAGTTTGCCGAGTATTGC
TGATGCCTTGGACAAGTTTGGGAATGGTGTTGGCGATGCAGTGATTTATG
ACTACGCCGTGTTGACGTGGTGGGCACGGCAGGAAGCCAAGAAGGGGAAC
AATGGGTATGCAGTCGTGGGAGACCCAATCGCACCAGAAACGTATGGAAT
GCCGACGCACGACTCGAACAATGACTTGCGGGAGGCACTTGACGGAGCCA
TCCTGCAGACGTGGGCGCAAGAGTCGTACGATGGCCTCATCGACAAGTGG
GTGGCGCCTCCTCCTTCGCAGCGTGACCTTGTGGCGGAAGAAAACCTCCG
TGGCAATGCGCTTGCCATTGTGGGAGGCATTTTTCTCGGGATTGCGATCG
TCGCCATCCTCACCCTCTTGCTCCGCAATTTTCTCTGTCCCAAGAAGAAG
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