mRNA_M-pyrifera_M_contig73488.17420.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73488.17420.1
Unique NamemRNA_M-pyrifera_M_contig73488.17420.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.070e-34
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:    7 QVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARWIADLY 243
            QVLHGAAPGRMAAEESPE RDIYWFNTRVTQ +R R RILVE FL +LYVFYVVPVTLLYLLLS DSVTSYA W+A+LY
Sbjct:  543 QVLHGAAPGRMAAEESPEARDIYWFNTRVTQNQRNRRRILVEVFLGVLYVFYVVPVTLLYLLLSEDSVTSYADWVAELY 621
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.460e-14
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    7 QVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARWIAD 237
            QV H    GR+ A E+PEPRD+YW N  + +  R R R+LV+AFL +LYVF+VVPVT LYL+ S +++++++  + D
Sbjct:  384 QVHHTNKVGRLRAYEAPEPRDVYWQNAHIRRATRLRRRVLVDAFLAVLYVFWVVPVTGLYLVFSTEALSAHSALLRD 460
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A7S3NIB5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIB5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.500e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    7 QVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARW 228
            QV H A PG M A  +PEPRDI+W N R++Q  R   R++    + LL +FYVVPVTL+ L+LS  ++   ARW
Sbjct:  478 QVFHAATPGGMIAAIAPEPRDIFWPNLRLSQPTRATRRVIANILVVLLLIFYVVPVTLISLVLSEQAIL--ARW 549
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A066WJW4_TILAU (DUF221-domain-containing protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066WJW4_TILAU)

HSP 1 Score: 61.2 bits (147), Expect = 5.690e-9
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 LVQVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARWIADLYAS 249
            L Q +H   PG      +PEPRDI W N  +   ER+  ++LV AF+ L+ +FY+ P+T L   L  +++  YA W+  L ++
Sbjct:  495 LAQSVHYPLPGLCITTLAPEPRDIIWSNVAMPAGERRTRQVLVSAFVLLVLIFYIPPLTALASFLKPEAIRKYAPWLYKLLSA 577
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A316ZL19_9BASI (DUF221-domain-containing protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZL19_9BASI)

HSP 1 Score: 60.5 bits (145), Expect = 1.060e-8
Identity = 30/75 (40.00%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    7 QVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARWI 231
            Q +H   PG      +PEPRDI W N  +   ER+  ++LV AF F L+VFY+ P+T L   LS  ++  Y  W+
Sbjct:  425 QTVHYPIPGYCKTSLAPEPRDIIWSNVSLAPLERRLRQLLVSAFTFTLFVFYIPPLTFLASFLSPGAIRRYIPWL 499
[Close]
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Match: A0A0P1BLS9_9BASI (Uncharacterized conserved protein n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BLS9_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 7.480e-6
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:    7 QVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLLYVFYVVPVTLLYLLLSADSVTSYARWI 231
            Q +H   P    +  + EPRD+ W N  +   ER+  ++LV AF F L++FY+ P+  L  LLS  ++  Y  W+
Sbjct:  431 QTVHYPLPFYCKSSLAVEPRDLIWSNVSLAPLERRLRQLLVSAFTFTLFIFYIPPLAFLASLLSPAAIEKYLPWL 505
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73488.17420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JKU1_9PHAE4.070e-3484.81ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835Z3W6_9STRA5.460e-1448.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3NIB5_9STRA1.500e-1148.65Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A066WJW4_TILAU5.690e-936.14DUF221-domain-containing protein n=1 Tax=Tilletiar... [more]
A0A316ZL19_9BASI1.060e-840.00DUF221-domain-containing protein n=1 Tax=Tilletiop... [more]
A0A0P1BLS9_9BASI7.480e-634.67Uncharacterized conserved protein n=2 Tax=Ceraceos... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73488contigM-pyrifera_M_contig73488:89..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue7.4e-29
Seed eggNOG ortholog2880.D8LQB2
KEGG koko:K21989
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.1096668-CDS-M-pyrifera_M_contig73488:88..3521622816632.1096668-CDS-M-pyrifera_M_contig73488:88..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73488 89..352 -
1692278088.500858-CDS-M-pyrifera_M_contig73488:88..3521692278088.500858-CDS-M-pyrifera_M_contig73488:88..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73488 89..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73488.17420.1prot_M-pyrifera_M_contig73488.17420.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73488 89..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73488.17420.1

>prot_M-pyrifera_M_contig73488.17420.1 ID=prot_M-pyrifera_M_contig73488.17420.1|Name=mRNA_M-pyrifera_M_contig73488.17420.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
LVQVLHGAAPGRMAAEESPEPRDIYWFNTRVTQTERKRSRILVEAFLFLL
YVFYVVPVTLLYLLLSADSVTSYARWIADLYASVSGH*
back to top

mRNA from alignment at M-pyrifera_M_contig73488:89..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73488.17420.1 ID=mRNA_M-pyrifera_M_contig73488.17420.1|Name=mRNA_M-pyrifera_M_contig73488.17420.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig73488:89..352- (Macrocystis pyrifera P11B4 male)
CTTGTCCAGGTTTTGCATGGCGCGGCGCCCGGACGCATGGCGGCGGAGGA
GTCCCCCGAGCCGCGCGACATCTACTGGTTCAACACCCGCGTGACCCAGA
CCGAGAGGAAGAGAAGCCGCATCCTGGTGGAGGCGTTTTTGTTCCTGCTT
TACGTGTTCTACGTGGTGCCCGTTACCCTGCTTTATCTCCTTCTATCCGC
GGACTCGGTCACCTCTTACGCACGGTGGATCGCGGATTTGTACGCTAGTG
TAAGTGGGCATTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig73488:89..352-

>mRNA_M-pyrifera_M_contig73488.17420.1 ID=mRNA_M-pyrifera_M_contig73488.17420.1|Name=mRNA_M-pyrifera_M_contig73488.17420.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig73488:89..352- (Macrocystis pyrifera P11B4 male)
CTTGTCCAGGTTTTGCATGGCGCGGCGCCCGGACGCATGGCGGCGGAGGA
GTCCCCCGAGCCGCGCGACATCTACTGGTTCAACACCCGCGTGACCCAGA
CCGAGAGGAAGAGAAGCCGCATCCTGGTGGAGGCGTTTTTGTTCCTGCTT
TACGTGTTCTACGTGGTGCCCGTTACCCTGCTTTATCTCCTTCTATCCGC
GGACTCGGTCACCTCTTACGCACGGTGGATCGCGGATTTGTACGCTAGTG
TAAGTGGGCATTAGCTTGTCCAGGTTTTGCATGGCGCGGCGCCCGGACGC
ATGGCGGCGGAGGAGTCCCCCGAGCCGCGCGACATCTACTGGTTCAACAC
CCGCGTGACCCAGACCGAGAGGAAGAGAAGCCGCATCCTGGTGGAGGCGT
TTTTGTTCCTGCTTTACGTGTTCTACGTGGTGCCCGTTACCCTGCTTTAT
CTCCTTCTATCCGCGGACTCGGTCACCTCTTACGCACGGTGGATCGCGGA
TTTGTACGCTAGTGTAAGTGGGCATTAG
back to top