mRNA_M-pyrifera_M_contig73342.17395.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73342.17395.1
Unique NamemRNA_M-pyrifera_M_contig73342.17395.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73342.17395.1 vs. uniprot
Match: A0A518D3F9_9BACT (PilZ domain-containing protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D3F9_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 7.360e-5
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  121 GHTIDVSTAGARTEMMRPARVGDHYLMRLFTKEDQPVEV---VARCLRCILLTENRFEVALRFLAPL 312
            G  +D+S  G R E+  P+ VGD  +++    E++ VE+    ARCLRC +  E R+E + +FL+P+
Sbjct:   57 GTLLDISRGGFRAELDAPSPVGD--VLQAVLVENEEVEIEPRFARCLRCAVAAEGRYEASFQFLSPV 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73342.17395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A518D3F9_9BACT7.360e-537.31PilZ domain-containing protein n=1 Tax=Planctomyce... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73342contigM-pyrifera_M_contig73342:746..1099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.7084455-CDS-M-pyrifera_M_contig73342:745..10991622816630.7084455-CDS-M-pyrifera_M_contig73342:745..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73342 746..1099 -
1692278087.661492-CDS-M-pyrifera_M_contig73342:745..10991692278087.661492-CDS-M-pyrifera_M_contig73342:745..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73342 746..1099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73342.17395.1prot_M-pyrifera_M_contig73342.17395.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73342 746..1099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73342.17395.1

>prot_M-pyrifera_M_contig73342.17395.1 ID=prot_M-pyrifera_M_contig73342.17395.1|Name=mRNA_M-pyrifera_M_contig73342.17395.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
LERQLAPETEERRGAERHTLRIAVRLNPADASRLDEPATVGHTIDVSTAG
ARTEMMRPARVGDHYLMRLFTKEDQPVEVVARCLRCILLTENRFEVALRF
LAPLGEHDLPLEDDLTF*
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mRNA from alignment at M-pyrifera_M_contig73342:746..1099-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73342.17395.1 ID=mRNA_M-pyrifera_M_contig73342.17395.1|Name=mRNA_M-pyrifera_M_contig73342.17395.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig73342:746..1099- (Macrocystis pyrifera P11B4 male)
TTGGAGCGGCAGCTCGCTCCCGAAACCGAGGAGCGGCGCGGCGCAGAGCG
CCACACGCTGCGCATCGCCGTTCGACTCAACCCGGCCGACGCAAGCCGCC
TGGACGAGCCCGCAACCGTCGGGCATACGATCGACGTCTCCACGGCGGGC
GCCCGCACCGAGATGATGCGCCCCGCACGCGTCGGCGACCATTATCTGAT
GCGGCTGTTCACCAAGGAGGACCAGCCGGTCGAGGTCGTCGCCCGCTGCC
TGCGCTGCATCCTGCTCACCGAGAACCGCTTCGAGGTCGCACTCCGCTTC
CTCGCGCCCCTCGGAGAGCACGACCTGCCGCTCGAGGACGACCTCACGTT
CTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73342:746..1099-

>mRNA_M-pyrifera_M_contig73342.17395.1 ID=mRNA_M-pyrifera_M_contig73342.17395.1|Name=mRNA_M-pyrifera_M_contig73342.17395.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig73342:746..1099- (Macrocystis pyrifera P11B4 male)
TTGGAGCGGCAGCTCGCTCCCGAAACCGAGGAGCGGCGCGGCGCAGAGCG
CCACACGCTGCGCATCGCCGTTCGACTCAACCCGGCCGACGCAAGCCGCC
TGGACGAGCCCGCAACCGTCGGGCATACGATCGACGTCTCCACGGCGGGC
GCCCGCACCGAGATGATGCGCCCCGCACGCGTCGGCGACCATTATCTGAT
GCGGCTGTTCACCAAGGAGGACCAGCCGGTCGAGGTCGTCGCCCGCTGCC
TGCGCTGCATCCTGCTCACCGAGAACCGCTTCGAGGTCGCACTCCGCTTC
CTCGCGCCCCTCGGAGAGCACGACCTGCCGCTCGAGGACGACCTCACGTT
CTGATTGGAGCGGCAGCTCGCTCCCGAAACCGAGGAGCGGCGCGGCGCAG
AGCGCCACACGCTGCGCATCGCCGTTCGACTCAACCCGGCCGACGCAAGC
CGCCTGGACGAGCCCGCAACCGTCGGGCATACGATCGACGTCTCCACGGC
GGGCGCCCGCACCGAGATGATGCGCCCCGCACGCGTCGGCGACCATTATC
TGATGCGGCTGTTCACCAAGGAGGACCAGCCGGTCGAGGTCGTCGCCCGC
TGCCTGCGCTGCATCCTGCTCACCGAGAACCGCTTCGAGGTCGCACTCCG
CTTCCTCGCGCCCCTCGGAGAGCACGACCTGCCGCTCGAGGACGACCTCA
CGTTCTGA
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