mRNA_M-pyrifera_M_contig73127.17356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73127.17356.1
Unique NamemRNA_M-pyrifera_M_contig73127.17356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A6H5JZY6_9PHAE (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.200e-26
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            RIRAVSLIKGVDKGP+GLKLISD IREGLCGAVPVSVLMGANVANEVARDELCEST+
Sbjct:  160 RIRAVSLIKGVDKGPDGLKLISDHIREGLCGAVPVSVLMGANVANEVARDELCESTL 216
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BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: GPD1L_DANRE (Glycerol-3-phosphate dehydrogenase 1-like protein n=17 Tax=Teleostei TaxID=32443 RepID=GPD1L_DANRE)

HSP 1 Score: 75.9 bits (185), Expect = 7.850e-15
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            R R ++LIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:  113 RARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 167
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BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A8C1D307_CYPCA (Glycerol-3-phosphate dehydrogenase 1 like n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1D307_CYPCA)

HSP 1 Score: 73.9 bits (180), Expect = 1.040e-14
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R ++LIKG+D+GPEG+KLISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:  113 KARGITLIKGIDEGPEGMKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A8C4DM40_DICLA (NAD_Gly3P_dh_N domain-containing protein n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4DM40_DICLA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-14
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R ++LIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  113 KARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A8C1CIE9_CYPCA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1CIE9_CYPCA)

HSP 1 Score: 74.7 bits (182), Expect = 1.410e-14
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R ++LIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:   94 KARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: S4RW01_PETMA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RW01_PETMA)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-14
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   13 VSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            +SLIKGVD+GP+GLKLISD IRE L   +PVSVLMGAN+ANEVA ++ CE+T+
Sbjct:  119 ISLIKGVDEGPDGLKLISDIIREQL--DIPVSVLMGANIANEVAEEKFCETTI 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A8C1CN75_CYPCA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1CN75_CYPCA)

HSP 1 Score: 74.7 bits (182), Expect = 1.510e-14
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R ++LIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:   92 KARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: UPI0018FFF67C (glycerol-3-phosphate dehydrogenase 1-like protein isoform X2 n=2 Tax=Teleostei TaxID=32443 RepID=UPI0018FFF67C)

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-14
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    7 RAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            R ++LIKG+D+GPEGLKLISD IRE +  A+ VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  115 RGITLIKGIDEGPEGLKLISDIIREKM--AIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: W5M2H7_LEPOC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Lepisosteidae TaxID=7915 RepID=W5M2H7_LEPOC)

HSP 1 Score: 74.7 bits (182), Expect = 2.070e-14
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R +SLIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CE+T+
Sbjct:  113 KARGISLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCETTI 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Match: A0A672NJQ9_SINGR (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=24 Tax=Clupeocephala TaxID=186625 RepID=A0A672NJQ9_SINGR)

HSP 1 Score: 74.7 bits (182), Expect = 2.080e-14
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARDELCESTV 171
            + R ++LIKG+D+GPEGLKLISD IRE +   + VSVLMGAN+ANEVA ++ CEST+
Sbjct:  114 KARGITLIKGIDEGPEGLKLISDIIREKM--GIDVSVLMGANIANEVAAEKFCESTI 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73127.17356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZY6_9PHAE1.200e-2694.74Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
GPD1L_DANRE7.850e-1564.91Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
A0A8C1D307_CYPCA1.040e-1461.40Glycerol-3-phosphate dehydrogenase 1 like n=2 Tax=... [more]
A0A8C4DM40_DICLA1.370e-1461.40NAD_Gly3P_dh_N domain-containing protein n=1 Tax=D... [more]
A0A8C1CIE9_CYPCA1.410e-1463.16Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
S4RW01_PETMA1.510e-1469.81Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A8C1CN75_CYPCA1.510e-1463.16Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
UPI0018FFF67C1.700e-1465.45glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
W5M2H7_LEPOC2.070e-1463.16Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A672NJQ9_SINGR2.080e-1463.16Glycerol-3-phosphate dehydrogenase [NAD(+)] n=24 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73127contigM-pyrifera_M_contig73127:775..945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score76.3
Seed ortholog evalue5.3e-12
Seed eggNOG ortholog9258.ENSOANP00000016375
Preferred nameGPD1
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004367,GO:0004368,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006072,GO:0006091,GO:0006094,GO:0006109,GO:0006110,GO:0006116,GO:0006127,GO:0006139,GO:0006140,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009331,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010562,GO:0014070,GO:0014074,GO:0015980,GO:0016051,GO:0016491,GO:0016614,GO:0016616,GO:0016901,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019362,GO:0019637,GO:0019674,GO:0022900,GO:0022904,GO:0030808,GO:0030810,GO:0030811,GO:0030813,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0032991,GO:0034097,GO:0034308,GO:0034612,GO:0034641,GO:0036094,GO:0042180,GO:0042221,GO:0042325,GO:0042327,GO:0043467,GO:0043470,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0045333,GO:0045821,GO:0045913,GO:0045935,GO:0045937,GO:0045981,GO:0046364,GO:0046473,GO:0046474,GO:0046483,GO:0046486,GO:0046496,GO:0046683,GO:0048037,GO:0048518,GO:0048522,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051186,GO:0051193,GO:0051194,GO:0051196,GO:0051197,GO:0051287,GO:0051591,GO:0051716,GO:0052646,GO:0055086,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0070887,GO:0071310,GO:0071320,GO:0071345,GO:0071356,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0072524,GO:0080090,GO:0090407,GO:0097159,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901615,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1903578,GO:1903580,GO:1990204,GO:2001169,GO:2001171
EggNOG free text desc.glycerophosphate shuttle
EggNOG OGs38E7F@33154,3BCI8@33208,3CVH2@33213,3JANW@40674,47ZP4@7711,48VII@7742,COG0240@1,KOG2711@2759
EC1.1.1.8
COG Functional cat.C
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.4614239-CDS-M-pyrifera_M_contig73127:774..9451622816628.4614239-CDS-M-pyrifera_M_contig73127:774..945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73127 775..945 -
1692278086.2452736-CDS-M-pyrifera_M_contig73127:774..9451692278086.2452736-CDS-M-pyrifera_M_contig73127:774..945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73127 775..945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73127.17356.1prot_M-pyrifera_M_contig73127.17356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73127 775..945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73127.17356.1

>prot_M-pyrifera_M_contig73127.17356.1 ID=prot_M-pyrifera_M_contig73127.17356.1|Name=mRNA_M-pyrifera_M_contig73127.17356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
RIRAVSLIKGVDKGPEGLKLISDKIREGLCGAVPVSVLMGANVANEVARD
ELCESTV
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mRNA from alignment at M-pyrifera_M_contig73127:775..945-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73127.17356.1 ID=mRNA_M-pyrifera_M_contig73127.17356.1|Name=mRNA_M-pyrifera_M_contig73127.17356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig73127:775..945- (Macrocystis pyrifera P11B4 male)
AGGATTCGCGCGGTGTCGTTGATCAAGGGGGTGGACAAGGGTCCAGAAGG
GTTGAAGCTCATCTCAGACAAGATTCGCGAGGGCCTCTGCGGAGCGGTAC
CCGTGAGCGTCCTGATGGGGGCCAACGTCGCGAACGAGGTCGCCCGCGAT
GAGCTGTGCGAGTCTACGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73127:775..945-

>mRNA_M-pyrifera_M_contig73127.17356.1 ID=mRNA_M-pyrifera_M_contig73127.17356.1|Name=mRNA_M-pyrifera_M_contig73127.17356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig73127:775..945- (Macrocystis pyrifera P11B4 male)
AGGATTCGCGCGGTGTCGTTGATCAAGGGGGTGGACAAGGGTCCAGAAGG
GTTGAAGCTCATCTCAGACAAGATTCGCGAGGGCCTCTGCGGAGCGGTAC
CCGTGAGCGTCCTGATGGGGGCCAACGTCGCGAACGAGGTCGCCCGCGAT
GAGCTGTGCGAGTCTACGGTAAGGATTCGCGCGGTGTCGTTGATCAAGGG
GGTGGACAAGGGTCCAGAAGGGTTGAAGCTCATCTCAGACAAGATTCGCG
AGGGCCTCTGCGGAGCGGTACCCGTGAGCGTCCTGATGGGGGCCAACGTC
GCGAACGAGGTCGCCCGCGATGAGCTGTGCGAGTCTACGGTA
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