mRNA_M-pyrifera_M_contig72877.17307.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72877.17307.1
Unique NamemRNA_M-pyrifera_M_contig72877.17307.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A3D0TP94_9ACTN (CoA transferase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TP94_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 4.130e-37
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    4 DPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            DPRF   +AR+ NVD LY L+      HTT +W+  CD ASI A  VLDL  ++DDPH AAVG++   +HP+EGAYR VRD V FS     + RH+PR G  TAE+LAELGY + E A +V  G
Sbjct:  137 DPRFADHDARIANVDELYALIADLAGTHTTAQWLDFCDEASIAAAAVLDLAELDDDPHLAAVGLVRTVEHPSEGAYRHVRDAVEFSDSPTALHRHAPRLGEHTAELLAELGYSDDETAQLVADG 260          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A3D0TWA9_9ACTN (CoA transferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TWA9_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 4.810e-36
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    4 DPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            DPRF   +AR+ NVD LY L+      HTT +W+  CD ASI A  VLDL  ++DDPH AAVG++   +HP+EGAYR VRD V FS     + RH+PR G  TAE+LAELGY + E A +V  G
Sbjct:  252 DPRFADHDARIANVDELYALIADLAGTHTTAQWLDFCDEASIAAAAVLDLAELDDDPHLAAVGLVRTVEHPSEGAYRHVRDAVEFSDSPTALHRHAPRLGEHTAELLAELGYSDDETAQLVADG 375          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A350RIL5_9ACTN (CoA transferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A350RIL5_9ACTN)

HSP 1 Score: 135 bits (341), Expect = 8.340e-36
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            +D RF + NARV N   LYEL+       TT EW++ CD  SIPA  VLDL  +E+DPH + V ++++ DHPTEG YR VRDPVR+S  + G+ RH+PR G  + E+LAELGYD + I  +V  G
Sbjct:  269 NDKRFETHNARVANTSELYELIGEAAQYKTTGEWLEFCDEVSIPAAAVLDLAKLEEDPHLSQVDLVQIIDHPTEGKYRYVRDPVRYSESSTGLHRHAPRLGEHSTELLAELGYDRETITEMVREG 393          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A520WSS0_9ACTN (CoA transferase n=3 Tax=Acidimicrobiales TaxID=84993 RepID=A0A520WSS0_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 3.400e-34
Identity = 62/124 (50.00%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    4 DPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            D RFV+ N RVTN   LYEL+       TTD+W++ CD  SIPA  VLDL    +DPH + VG++E+ +HPTEG YR V DPV +S  + G+ RH+PR G  + E+L ELGYDE +I+ +V  G
Sbjct:  270 DERFVTHNDRVTNTSELYELIGEAARLKTTDQWLEFCDGVSIPAASVLDLAKFHEDPHLSEVGLVEVMNHPTEGDYRYVNDPVIYSETSTGLHRHAPRLGQHSIELLEELGYDEAKISKMVSEG 393          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: W7SAC6_9PSEU (CAIB/BAIF CoA-transferase, family III n=5 Tax=Kutzneria TaxID=43356 RepID=W7SAC6_9PSEU)

HSP 1 Score: 127 bits (320), Expect = 8.240e-33
Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            DDPRF    +   N DA Y+L++ F A  TT EW   C   SIP  PVLDL+ + +DP+   VG++E  +HPTEG YR++  PV+FS+  A V RH+PR G    E+L ELGY E E+  + EAG
Sbjct:  259 DDPRFADSASLAANFDAFYDLIEKFAAERTTAEWEATCARLSIPFAPVLDLDDVTEDPYVTEVGLLECAEHPTEGTYRVIGSPVQFSATPASVRRHAPRLGQDNDEVLGELGYSEDELRELAEAG 383          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A381PCP3_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381PCP3_9ZZZZ)

HSP 1 Score: 127 bits (319), Expect = 1.400e-32
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    1 DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            DD RF + NARV +   LY+L+    A  +T+ W++ CD ASIPA  V++L    +DPH A VG++++ DHPTEG Y  VRDPV +S    G+ RH+PR G  +AE+L ELGY  +EI+A+V  G
Sbjct:  269 DDERFATHNARVAHTTELYDLIAEAAATKSTEIWVEFCDKASIPAAKVMELSEFANDPHLAEVGLVQVADHPTEGGYNYVRDPVIYSDSPTGLRRHAPRLGEHSAELLNELGYGAEEISALVADG 393          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A351EQY4_9ACTN (CoA transferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EQY4_9ACTN)

HSP 1 Score: 126 bits (317), Expect = 2.610e-32
Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWR-HSPRPGAGTAEILAELGYDEQEIAAV 363
            DD RF +VN+RV N++ALY L+  F    TT EWM      SIP +PV +L  +E+DPHFAAVG+ E  +HPTEG+YR+V+DPV F+S ++   R H+P  G  TAE+L ELG+   +IA V
Sbjct:  272 DDERFATVNSRVANINALYGLVHEFAGSKTTAEWMAFAKANSIPCMPVNELSELENDPHFAAVGLFEPAEHPTEGSYRVVKDPVSFASDDSPTLRRHAPHVGQHTAEMLTELGWSPDDIATV 393          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A6G2JCW5_9ACTN (CoA transferase n=4 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6G2JCW5_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 4.590e-32
Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            DDPRF   N+R+ ++D LY L      R TTDEW+  CD  SIPA  V+DL  ++ DP  AAVG++ + +HPTEGAYR V DPV +S+    + RH+P  G    EIL ELGY + EI A+ + G
Sbjct:  282 DDPRFADHNSRIAHIDELYALFGELSVRRTTDEWIAYCDTHSIPAARVMDLADLDADPQLAAVGLVSISEHPTEGAYRYVADPVIYSATPTRLRRHAPLLGEHAVEILCELGYGDDEIDALRDQG 406          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A0C1RCP1_9ACTN (Uncharacterized protein n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1RCP1_9ACTN)

HSP 1 Score: 124 bits (312), Expect = 1.440e-31
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   10 RFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            RF + NARV N   LY L+       TT  W++ CD  SIPA  VLDL ++EDDPH + V ++ + DHPTEG YR VRDPVR+S    G+ RH+PR G  + E+L ELGY++ +I+ +V  G
Sbjct:  272 RFATHNARVANTAELYGLIADAAQLKTTAVWLEFCDRVSIPAAAVLDLANLEDDPHLSQVDLVHVTDHPTEGKYRYVRDPVRYSESATGLHRHAPRLGEHSIELLLELGYNDDQISEMVSNG 393          
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Match: A0A2E4AMH3_9ACTN (CoA transferase n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4AMH3_9ACTN)

HSP 1 Score: 122 bits (307), Expect = 7.690e-31
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    4 DPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLDLEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRPGAGTAEILAELGYDEQEIAAVVEAG 375
            D RF + NARV N   LY+L+       TT  W++ CD  SIPA PV+DL    +DPH + V ++++ +HPTEG YR VRDPV +S  + G+ RH+PR G  + E+L ELGY +  I+A++  G
Sbjct:  270 DDRFATHNARVANTSDLYDLIAEAAQSATTGTWIEFCDECSIPAAPVIDLSTFSEDPHLSHVELVQVLEHPTEGEYRYVRDPVLYSQNSTGLRRHAPRLGEHSVELLKELGYSDDAISALITEG 393          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72877.17307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D0TP94_9ACTN4.130e-3752.42CoA transferase (Fragment) n=1 Tax=Acidimicrobiace... [more]
A0A3D0TWA9_9ACTN4.810e-3652.42CoA transferase n=1 Tax=Acidimicrobiaceae bacteriu... [more]
A0A350RIL5_9ACTN8.340e-3650.40CoA transferase n=2 Tax=Acidimicrobiaceae bacteriu... [more]
A0A520WSS0_9ACTN3.400e-3450.00CoA transferase n=3 Tax=Acidimicrobiales TaxID=849... [more]
W7SAC6_9PSEU8.240e-3347.20CAIB/BAIF CoA-transferase, family III n=5 Tax=Kutz... [more]
A0A381PCP3_9ZZZZ1.400e-3248.00Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A351EQY4_9ACTN2.610e-3250.82CoA transferase n=1 Tax=Acidimicrobiaceae bacteriu... [more]
A0A6G2JCW5_9ACTN4.590e-3248.00CoA transferase n=4 Tax=Acidimicrobiales bacterium... [more]
A0A0C1RCP1_9ACTN1.440e-3148.36Uncharacterized protein n=4 Tax=Actinobacteria Tax... [more]
A0A2E4AMH3_9ACTN7.690e-3145.16CoA transferase n=4 Tax=Actinobacteria TaxID=20117... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72877contigM-pyrifera_M_contig72877:726..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score130.6
Seed ortholog evalue5.4e-28
Seed eggNOG ortholog345341.KUTG_02089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA-transferase family III
EggNOG OGs2GIU7@201174,4E1CF@85010,COG1804@1,COG1804@2
COG Functional cat.C
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.9617777-CDS-M-pyrifera_M_contig72877:725..11151622816625.9617777-CDS-M-pyrifera_M_contig72877:725..1115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72877 726..1115 -
1692278084.7959127-CDS-M-pyrifera_M_contig72877:725..11151692278084.7959127-CDS-M-pyrifera_M_contig72877:725..1115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72877 726..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72877.17307.1prot_M-pyrifera_M_contig72877.17307.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72877 726..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72877.17307.1

>prot_M-pyrifera_M_contig72877.17307.1 ID=prot_M-pyrifera_M_contig72877.17307.1|Name=mRNA_M-pyrifera_M_contig72877.17307.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
DDPRFVSVNARVTNVDALYELLDTFMARHTTDEWMQLCDNASIPAVPVLD
LEHIEDDPHFAAVGMIELHDHPTEGAYRIVRDPVRFSSGNAGVWRHSPRP
GAGTAEILAELGYDEQEIAAVVEAGSWQP*
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mRNA from alignment at M-pyrifera_M_contig72877:726..1115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72877.17307.1 ID=mRNA_M-pyrifera_M_contig72877.17307.1|Name=mRNA_M-pyrifera_M_contig72877.17307.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig72877:726..1115- (Macrocystis pyrifera P11B4 male)
GACGATCCCCGCTTCGTCTCGGTCAATGCTCGGGTCACCAACGTCGATGC GCTCTACGAACTGCTCGACACCTTCATGGCGCGCCACACCACCGACGAGT GGATGCAGCTGTGCGACAACGCCTCGATTCCCGCCGTGCCGGTGCTCGAC CTCGAACACATCGAAGACGATCCGCACTTCGCTGCGGTCGGCATGATCGA GCTCCACGATCACCCGACCGAAGGCGCCTATCGCATCGTTCGTGATCCCG TCAGGTTCTCGTCGGGCAACGCCGGCGTGTGGCGTCACAGCCCTCGCCCG GGGGCCGGTACCGCCGAGATCCTGGCCGAGCTCGGCTACGACGAGCAGGA GATCGCCGCCGTCGTCGAAGCCGGTTCCTGGCAGCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72877:726..1115-

>mRNA_M-pyrifera_M_contig72877.17307.1 ID=mRNA_M-pyrifera_M_contig72877.17307.1|Name=mRNA_M-pyrifera_M_contig72877.17307.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig72877:726..1115- (Macrocystis pyrifera P11B4 male)
GACGATCCCCGCTTCGTCTCGGTCAATGCTCGGGTCACCAACGTCGATGC
GCTCTACGAACTGCTCGACACCTTCATGGCGCGCCACACCACCGACGAGT
GGATGCAGCTGTGCGACAACGCCTCGATTCCCGCCGTGCCGGTGCTCGAC
CTCGAACACATCGAAGACGATCCGCACTTCGCTGCGGTCGGCATGATCGA
GCTCCACGATCACCCGACCGAAGGCGCCTATCGCATCGTTCGTGATCCCG
TCAGGTTCTCGTCGGGCAACGCCGGCGTGTGGCGTCACAGCCCTCGCCCG
GGGGCCGGTACCGCCGAGATCCTGGCCGAGCTCGGCTACGACGAGCAGGA
GATCGCCGCCGTCGTCGAAGCCGGTTCCTGGCAGCCCTGAGACGATCCCC
GCTTCGTCTCGGTCAATGCTCGGGTCACCAACGTCGATGCGCTCTACGAA
CTGCTCGACACCTTCATGGCGCGCCACACCACCGACGAGTGGATGCAGCT
GTGCGACAACGCCTCGATTCCCGCCGTGCCGGTGCTCGACCTCGAACACA
TCGAAGACGATCCGCACTTCGCTGCGGTCGGCATGATCGAGCTCCACGAT
CACCCGACCGAAGGCGCCTATCGCATCGTTCGTGATCCCGTCAGGTTCTC
GTCGGGCAACGCCGGCGTGTGGCGTCACAGCCCTCGCCCGGGGGCCGGTA
CCGCCGAGATCCTGGCCGAGCTCGGCTACGACGAGCAGGAGATCGCCGCC
GTCGTCGAAGCCGGTTCCTGGCAGCCCTGA
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