mRNA_M-pyrifera_M_contig72512.17238.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72512.17238.1
Unique NamemRNA_M-pyrifera_M_contig72512.17238.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A0G4J5S2_PLABS (Tafazzin family protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J5S2_PLABS)

HSP 1 Score: 128 bits (321), Expect = 2.750e-34
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 KRVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQEMGPFRSGV 336
            +R  +RGLV+VSNH S++DDP  IA+M P  +L +  G+RW LCATDRCF    L   + +G+VLP+ RG G++Q+ M   +DRL  G+WVHVF EG RSKT E+ P +SGV
Sbjct:   71 ERPANRGLVTVSNHVSALDDPLTIASMTPLRVLLNTRGVRWGLCATDRCFHNAVLARFVSKGKVLPIARGRGMYQQGMQDALDRLDHGDWVHVFPEGTRSKTGEILPLKSGV 182
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A699YM46_HAELA (Tafazzin family protein n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YM46_HAELA)

HSP 1 Score: 120 bits (302), Expect = 2.910e-30
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:    4 RVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQE-MGPFRSGV 336
            R  ++GL++V NH +SVDDP V+A+++P    + PS +RWTLCATDRCF    L  L    +VLPV+RG G+HQ  M A   +L+ G+WVH+F EG RS+  E +GP R GV
Sbjct:  152 RPANQGLLTVCNHVASVDDPLVVASIVPQEYYSRPSSLRWTLCATDRCFKYAALAPLFTAAKVLPVQRGSGMHQPGMQAAEMKLAAGDWVHIFPEGTRSRNPEQLGPVRRGV 263
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A5A8CQS0_CAFRO (Tafazzin family protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CQS0_CAFRO)

HSP 1 Score: 115 bits (288), Expect = 9.090e-30
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 KRVRSRGLVSVSNHTSSVDDPGVIAAMM-PWSM-LAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQEMG-PFRSGV 336
            +R R +GLV+V NH + +DDP  +A  + P  + L     +RWT+CATDRCF    +G++L  G+VLP+ RG GVHQ  MDA V+ L  GEW+H+F EGRRS+T  +  P R GV
Sbjct:   46 RRARGQGLVTVMNHYTPIDDPAAVAVFLKPLELTLGVREHVRWTMCATDRCFKNPVVGQVLRWGKVLPIERGKGVHQPCMDAAVELLDSGEWMHIFPEGRRSRTGRIQTPLRVGV 160
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A812QSQ0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QSQ0_9DINO)

HSP 1 Score: 119 bits (298), Expect = 4.520e-29
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:   19 GLVSVSNHTSSVDDPGVIAAMMPWSMLA-HPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQEMGPFRSGV 336
            GL++VSNH S+VDDPG+ AA+  W   A  P  +RWT+CATDRC+     G LL  G+ +P++RG G+ Q  MD  VD L++GEW+HVF EGRR++   M P R GV
Sbjct:   78 GLITVSNHVSAVDDPGLPAALTSWRTTALEPERVRWTMCATDRCYKHPITGPLLSYGKTIPIQRGKGLWQAFMDDAVDLLNEGEWLHVFPEGRRTRDGSMLPLRPGV 184
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A7S0JX08_CAFRO (Tafazzin family protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JX08_CAFRO)

HSP 1 Score: 115 bits (288), Expect = 7.490e-29
Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 KRVRSRGLVSVSNHTSSVDDPGVIAAMM-PWSM-LAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQEMG-PFRSGV 336
            +R R +GLV+V NH + +DDP  +A  + P  + L     +RWT+CATDRCF    +G++L  G+VLP+ RG GVHQ  MDA V+ L  GEW+H+F EGRRS+T  +  P R GV
Sbjct:   94 RRARGQGLVTVMNHYTPIDDPAAVAVFLKPLELTLGVREHVRWTMCATDRCFKNPVVGQVLRWGKVLPIERGKGVHQPCMDAAVELLDSGEWMHIFPEGRRSRTGRIQTPLRVGV 208
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A068V9P1_COFCA (PlsC domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068V9P1_COFCA)

HSP 1 Score: 117 bits (294), Expect = 7.590e-29
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    4 RVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKT--QEMGPFRSGV 336
            R  ++ LV+VSNH ++VDDP V+AA++P ++L     +RWTLCATDRCF            +VLPV RGDG++QK MD  + +L+ GEWVH+F EG RS+   + +GP + GV
Sbjct:  135 RPENKPLVTVSNHVAAVDDPFVLAALLPRNVLLDAHNLRWTLCATDRCFRNPLTSAFFKYVKVLPVSRGDGIYQKGMDVAISKLNRGEWVHIFPEGSRSRDGGKTIGPIKRGV 247
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A2I0J5J7_PUNGR (Tafazzin family protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J5J7_PUNGR)

HSP 1 Score: 114 bits (285), Expect = 8.770e-29
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    4 RVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKT--QEMGPFRSGV 336
            R + + L++VSNH +SVDDP VIA+++P ++L     +RWTLCATDRCF           G+VLPV RGDG++QK MD  + +L+ G WVH+F EG RS+   + +G  + GV
Sbjct:  127 RPKGKPLLTVSNHVASVDDPFVIASVLPRNVLLDAQNLRWTLCATDRCFTNPVASAFFRCGKVLPVSRGDGIYQKGMDMAISKLNSGGWVHIFPEGSRSRDGGKTLGSPKRGV 239
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: I0YYH3_COCSC (Tafazzin family protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YYH3_COCSC)

HSP 1 Score: 112 bits (280), Expect = 9.510e-29
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   16 RGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKTQEMGPFRSGV 336
            + L++VSNH +S+DDP   AA++P   L  PS +RWTLCATDRCF            +VLPV RG G+ Q  M A   RL+ G+WVHVF EG RS+   MG  R GV
Sbjct:    3 QALITVSNHVASLDDPLATAALLPMGALLRPSALRWTLCATDRCFTNPAASAFFRAAKVLPVERGAGMEQAGMRAAEARLAAGDWVHVFPEGTRSRDGRMGHARKGV 109
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A2G9HDV3_9LAMI (Tafazzin family protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HDV3_9LAMI)

HSP 1 Score: 114 bits (285), Expect = 1.360e-28
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    4 RVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKT--QEMGPFRSGV 336
            R  ++ L++VSNH +++DDP VIA+++P SML   +G+RWTLCA+DRCF            +VLPV RGDG++QK MD  + +L+ G WVH+F EG RS+   + MG  + G+
Sbjct:  133 RPENKSLITVSNHVAAMDDPLVIASLLPPSMLLDANGLRWTLCASDRCFKNPVTSAFFKYVKVLPVSRGDGIYQKGMDLAISKLNRGGWVHIFPEGSRSRDGGKTMGSAKRGI 245
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BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Match: A0A0A0LYG6_CUCSA (PlsC domain-containing protein n=5 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0LYG6_CUCSA)

HSP 1 Score: 117 bits (292), Expect = 1.420e-28
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 KRVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCFDKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRSKT--QEMGPFRSGV 336
            +R + + LV+VSNH +SVDDP VIAA++P S+L     +RWTLCATDRCF+           +VLPV RGDG++QK MD  + +L+ G WVH+F EG RS+   + MG  + G+
Sbjct:  127 QRPKDQPLVTVSNHVASVDDPFVIAALLPPSVLFDAQNLRWTLCATDRCFNNSVTSAFFSTVKVLPVARGDGIYQKGMDMAISKLNHGGWVHIFPEGSRSRDGGKTMGSSKRGI 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72512.17238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4J5S2_PLABS2.750e-3452.68Tafazzin family protein n=1 Tax=Plasmodiophora bra... [more]
A0A699YM46_HAELA2.910e-3050.00Tafazzin family protein n=2 Tax=Haematococcus lacu... [more]
A0A5A8CQS0_CAFRO9.090e-3048.70Tafazzin family protein n=1 Tax=Cafeteria roenberg... [more]
A0A812QSQ0_9DINO4.520e-2951.40Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S0JX08_CAFRO7.490e-2948.70Tafazzin family protein n=2 Tax=Cafeteria roenberg... [more]
A0A068V9P1_COFCA7.590e-2947.79PlsC domain-containing protein n=4 Tax=Coffea TaxI... [more]
A0A2I0J5J7_PUNGR8.770e-2946.90Tafazzin family protein n=1 Tax=Punica granatum Ta... [more]
I0YYH3_COCSC9.510e-2949.53Tafazzin family protein (Fragment) n=1 Tax=Coccomy... [more]
A0A2G9HDV3_9LAMI1.360e-2846.02Tafazzin family protein n=1 Tax=Handroanthus impet... [more]
A0A0A0LYG6_CUCSA1.420e-2848.25PlsC domain-containing protein n=5 Tax=Benincaseae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72512contigM-pyrifera_M_contig72512:789..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score117.1
Seed ortholog evalue5.3e-24
Seed eggNOG ortholog3656.XP_008450630.1
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0008374,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032501,GO:0032502,GO:0035965,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046486,GO:0048513,GO:0048731,GO:0048856,GO:0061024,GO:0071704,GO:0071840,GO:0072359
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGs37I0T@33090,3GCGM@35493,4JDGW@91835,KOG2847@1,KOG2847@2759
COG Functional cat.I
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.9248261-CDS-M-pyrifera_M_contig72512:788..11241622816621.9248261-CDS-M-pyrifera_M_contig72512:788..1124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72512 789..1124 +
1692278082.3024511-CDS-M-pyrifera_M_contig72512:788..11241692278082.3024511-CDS-M-pyrifera_M_contig72512:788..1124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72512 789..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72512.17238.1prot_M-pyrifera_M_contig72512.17238.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72512 789..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72512.17238.1

>prot_M-pyrifera_M_contig72512.17238.1 ID=prot_M-pyrifera_M_contig72512.17238.1|Name=mRNA_M-pyrifera_M_contig72512.17238.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
KRVRSRGLVSVSNHTSSVDDPGVIAAMMPWSMLAHPSGMRWTLCATDRCF
DKRWLGELLLRGRVLPVRRGDGVHQKAMDAVVDRLSDGEWVHVFAEGRRS
KTQEMGPFRSGV
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mRNA from alignment at M-pyrifera_M_contig72512:789..1124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72512.17238.1 ID=mRNA_M-pyrifera_M_contig72512.17238.1|Name=mRNA_M-pyrifera_M_contig72512.17238.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig72512:789..1124+ (Macrocystis pyrifera P11B4 male)
AAGCGGGTTCGTTCACGAGGACTGGTTTCTGTGTCGAACCATACAAGTTC
TGTGGATGACCCTGGTGTCATTGCAGCCATGATGCCGTGGTCTATGCTTG
CACATCCATCTGGGATGCGGTGGACGTTGTGCGCCACAGATCGGTGCTTT
GACAAACGCTGGTTAGGAGAACTCCTTCTCCGTGGGCGTGTATTGCCTGT
ACGTCGAGGAGATGGTGTACATCAAAAGGCAATGGATGCAGTAGTGGATC
GACTAAGTGACGGTGAATGGGTCCATGTGTTTGCAGAGGGAAGAAGGTCA
AAGACACAAGAGATGGGACCTTTCCGGAGTGGAGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72512:789..1124+

>mRNA_M-pyrifera_M_contig72512.17238.1 ID=mRNA_M-pyrifera_M_contig72512.17238.1|Name=mRNA_M-pyrifera_M_contig72512.17238.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig72512:789..1124+ (Macrocystis pyrifera P11B4 male)
AAGCGGGTTCGTTCACGAGGACTGGTTTCTGTGTCGAACCATACAAGTTC
TGTGGATGACCCTGGTGTCATTGCAGCCATGATGCCGTGGTCTATGCTTG
CACATCCATCTGGGATGCGGTGGACGTTGTGCGCCACAGATCGGTGCTTT
GACAAACGCTGGTTAGGAGAACTCCTTCTCCGTGGGCGTGTATTGCCTGT
ACGTCGAGGAGATGGTGTACATCAAAAGGCAATGGATGCAGTAGTGGATC
GACTAAGTGACGGTGAATGGGTCCATGTGTTTGCAGAGGGAAGAAGGTCA
AAGACACAAGAGATGGGACCTTTCCGGAGTGGAGTTAAGCGGGTTCGTTC
ACGAGGACTGGTTTCTGTGTCGAACCATACAAGTTCTGTGGATGACCCTG
GTGTCATTGCAGCCATGATGCCGTGGTCTATGCTTGCACATCCATCTGGG
ATGCGGTGGACGTTGTGCGCCACAGATCGGTGCTTTGACAAACGCTGGTT
AGGAGAACTCCTTCTCCGTGGGCGTGTATTGCCTGTACGTCGAGGAGATG
GTGTACATCAAAAGGCAATGGATGCAGTAGTGGATCGACTAAGTGACGGT
GAATGGGTCCATGTGTTTGCAGAGGGAAGAAGGTCAAAGACACAAGAGAT
GGGACCTTTCCGGAGTGGAGTT
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