mRNA_M-pyrifera_M_contig72402.17217.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72402.17217.1
Unique NamemRNA_M-pyrifera_M_contig72402.17217.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A5D6YBZ7_9STRA (AAA domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBZ7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.640e-22
Identity = 48/113 (42.48%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G D ++A  V+ +AG+ PP+   L W A+++++FD+ +  ++++ + GY    +L +L+ D +A   LSDAQ+A++ +++AQA KKL DGA E  QLLDVA+Y  R
Sbjct:  223 QSAKQLCGDDDLSADDVIAVAGLAPPELLELFWTAVASNSFDKTKLEIENILMAGYPVLTILKQLNADVLANAKLSDAQQAKVCLRIAQADKKLVDGASEHFQLLDVASYIMR 335
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: H3G5M2_PHYRM (AAA domain-containing protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3G5M2_PHYRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-20
Identity = 45/113 (39.82%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G D ++   V+ +AG+ PP+     W ++ +++F+++++ ++S+ L GY    +L +L++D +A + L+DAQ+A+I +++A+A K+L DGA E  QLLDVA+YA R
Sbjct:  220 QSAKQLCGDDELSQDDVIAVAGLAPPELLQQFWVSVGSNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDAQKAKICLRIAEADKRLVDGASEHFQLLDVASYAMR 332
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: M4BR08_HYAAE (AAA domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=M4BR08_HYAAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.900e-20
Identity = 46/113 (40.71%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G + ++   V+ +AG+ PP+     W ++++++FD++++ + S+ L GY    +L +L++D +A E +SDAQ+A I +++A+A KKL DGA E  QLLDVA++A R
Sbjct:  222 QSAKQLCGDEELSEGDVVAVAGLAPPELLQQFWASVASNSFDKMKTDITSILLAGYPVLTILRQLNDDVLALEKISDAQKATICLRIAEADKKLVDGASEHFQLLDVASHAMR 334
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A662X9H9_9STRA (AAA domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9H9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.070e-19
Identity = 44/113 (38.94%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G D ++   V+ +AG+ PP+     W ++S+++F++++  ++ + L GY    +L +LS+D +A + L++ Q+A+I +++A+A +KL DGA E  QLLDVA+YA R
Sbjct:  208 QSAKQLCGDDELSEDDVVAVAGLAPPELLQQFWVSVSSNSFEKMKKDIEGILLAGYPVLTILRQLSDDVLALDKLNNLQKAKICLRIAEADRKLVDGASEHFQLLDVASYAMR 320
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: K3W771_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W771_GLOUD)

HSP 1 Score: 89.7 bits (221), Expect = 4.890e-19
Identity = 43/113 (38.05%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G++ ++   V+ +AG+ PP+   L W +++++ FD+++  ++S+ + GY    +L +LS+D +    LSD ++A++ +++A+A KKL DGA E  QLLDVA+Y  R
Sbjct:  221 QSAKQLCGNEPLSKDDVIAVAGLAPPELLELFWKSVASNNFDKMKVEIESILMAGYPVLTVLKQLSDDVLTNAKLSDTKKAKLCLRIAEADKKLVDGASEHFQLLDVASYIMR 333
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A8K1CCE1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCE1_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 9.670e-19
Identity = 43/113 (38.05%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G D ++   VL +AG+ PP+     W +++++ FD++++ V+++ + GY  + +L +LS D +    LSD Q+A++ +++A+A KKL DGA E  QL+DV +Y  R
Sbjct:  223 QSAKQLSGDDHISRDDVLAVAGLAPPEILESFWTSVASNNFDKMKTDVENILMSGYPVNTVLQQLSTDILNHTKLSDVQKAKLCLRVAEADKKLVDGASEHFQLMDVTSYVMR 335
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A5P1F425_ASPOF (AAA domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F425_ASPOF)

HSP 1 Score: 84.7 bits (208), Expect = 5.380e-17
Identity = 48/109 (44.04%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVAT 327
            QSAA+LFGS  ++A+ ++ ++GV+P DA   L+ A  +  FD+    V+++   GY  S +LN+L E  +  +D+SD Q+ARI  +L +A K L DGA+E LQLLDVA+
Sbjct:  273 QSAARLFGSS-ISAKDLISVSGVIPQDAVQALFAACKSGQFDQANKEVNNIISEGYPVSQMLNQLFEVVVNADDISDEQKARICKRLGEADKCLVDGADEYLQLLDVAS 380
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A843V6G6_COLES (AAA domain-containing protein n=2 Tax=Araceae TaxID=4454 RepID=A0A843V6G6_COLES)

HSP 1 Score: 81.6 bits (200), Expect = 4.890e-16
Identity = 46/113 (40.71%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSAA+LFGS  ++++ ++ ++GV+P +A   L  A  +  FD     V+++   GY  S +L++  +  +A +D+SD Q+ARI  +LA+A K L DGA+E LQLLDVA+++ R
Sbjct:  218 QSAARLFGSS-ISSKDLISVSGVIPQEAVLSLLEACKSGEFDAANKEVNNIIAEGYPVSQMLSQFFDVIVAADDISDEQKARICTRLAEADKWLVDGADEYLQLLDVASHSMR 329
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A2I0BAE3_9ASPA (AAA domain-containing protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BAE3_9ASPA)

HSP 1 Score: 80.1 bits (196), Expect = 1.960e-15
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSAA+L+GS  +++  ++ ++GV+P DA   L+ A     FD     V+S+   GY  S +L+ L E  ++ +D+SD Q+A+I  +LA+A K L DGA+E LQL+DVA++  R
Sbjct:  229 QSAARLYGSS-ISSNELVSVSGVIPQDAVQALFAACKTGEFDIANKEVNSVIAEGYPVSQMLSGLFEVIVSSDDISDEQKAKICERLAEADKCLVDGADEYLQLIDVASHTMR 340
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BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Match: A0A024TX80_9STRA (AAA domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX80_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.100e-15
Identity = 41/113 (36.28%), Postives = 72/113 (63.72%), Query Frame = 1 
Query:    1 QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDSLRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEERLQLLDVATYAAR 339
            QSA QL G D +T   +L IAGV P +   ++W  ++ ++FDR++  +D +   GY    +L++L+++ +   D+   ++A++ +++A+A KKL DGA E +QLLDVA +  R
Sbjct:  212 QSAHQLSG-DKITEDAILAIAGVAPKELFHVMWQHVAKNSFDRLKGEIDDIIYSGYPVLTILHQLADEVVGHPDMDMFKKAKVCLRIAEADKKLGDGASEYMQLLDVAAFLMR 323
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72402.17217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YBZ7_9STRA6.640e-2242.48AAA domain-containing protein n=1 Tax=Pythium bras... [more]
H3G5M2_PHYRM1.670e-2039.82AAA domain-containing protein n=23 Tax=Peronospora... [more]
M4BR08_HYAAE4.900e-2040.71AAA domain-containing protein n=4 Tax=Peronosporac... [more]
A0A662X9H9_9STRA3.070e-1938.94AAA domain-containing protein n=2 Tax=Nothophytoph... [more]
K3W771_GLOUD4.890e-1938.05AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1CCE1_PYTOL9.670e-1938.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5P1F425_ASPOF5.380e-1744.04AAA domain-containing protein n=2 Tax=Asparagus of... [more]
A0A843V6G6_COLES4.890e-1640.71AAA domain-containing protein n=2 Tax=Araceae TaxI... [more]
A0A2I0BAE3_9ASPA1.960e-1540.71AAA domain-containing protein n=1 Tax=Apostasia sh... [more]
A0A024TX80_9STRA3.100e-1536.28AAA domain-containing protein n=6 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72402contigM-pyrifera_M_contig72402:788..1126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog36331.EPrPI00000022612
Preferred nameRFC4
KEGG koko:K10755,ko:K14015
KEGG Pathwayko03030,ko03420,ko03430,ko04141,map03030,map03420,map03430,map04141
KEGG ModuleM00289,M00295,M00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000166,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010389,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010948,GO:0010972,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019899,GO:0019941,GO:0019985,GO:0022402,GO:0022616,GO:0030163,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031570,GO:0031625,GO:0031974,GO:0031981,GO:0032182,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033314,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0036094,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044786,GO:0044818,GO:0045786,GO:0045930,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902296,GO:1902319,GO:1902494,GO:1902749,GO:1902750,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.Replication factor C subunit 4. Source PGD
EggNOG OGs1MDCY@121069,COG0470@1,KOG0989@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.7387607-CDS-M-pyrifera_M_contig72402:787..11261622816620.7387607-CDS-M-pyrifera_M_contig72402:787..1126Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72402 788..1126 -
1692278081.5248313-CDS-M-pyrifera_M_contig72402:787..11261692278081.5248313-CDS-M-pyrifera_M_contig72402:787..1126Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72402 788..1126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72402.17217.1prot_M-pyrifera_M_contig72402.17217.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72402 788..1126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72402.17217.1

>prot_M-pyrifera_M_contig72402.17217.1 ID=prot_M-pyrifera_M_contig72402.17217.1|Name=mRNA_M-pyrifera_M_contig72402.17217.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
QSAAQLFGSDCVTAQGVLDIAGVVPPDATALLWGAISAHAFDRVRSSVDS
LRLHGYAASDLLNRLSEDTIAREDLSDAQRARIAIKLAQAAKKLADGAEE
RLQLLDVATYAAR
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mRNA from alignment at M-pyrifera_M_contig72402:788..1126-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72402.17217.1 ID=mRNA_M-pyrifera_M_contig72402.17217.1|Name=mRNA_M-pyrifera_M_contig72402.17217.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig72402:788..1126- (Macrocystis pyrifera P11B4 male)
CAAAGTGCAGCACAATTGTTTGGAAGTGATTGTGTGACAGCACAAGGTGT
GTTAGATATTGCCGGAGTTGTCCCTCCAGATGCAACTGCACTGCTTTGGG
GTGCCATTAGCGCACATGCATTCGATAGAGTACGTTCCAGTGTCGATTCT
CTTCGCCTCCATGGATATGCTGCTTCTGATCTTCTCAATCGGTTGTCTGA
AGATACAATAGCAAGAGAAGATCTCTCTGATGCGCAACGAGCTCGAATTG
CCATCAAGCTTGCTCAAGCAGCTAAAAAACTTGCTGATGGTGCCGAAGAA
AGACTCCAACTCCTCGATGTTGCCACATATGCTGCCAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72402:788..1126-

>mRNA_M-pyrifera_M_contig72402.17217.1 ID=mRNA_M-pyrifera_M_contig72402.17217.1|Name=mRNA_M-pyrifera_M_contig72402.17217.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig72402:788..1126- (Macrocystis pyrifera P11B4 male)
CAAAGTGCAGCACAATTGTTTGGAAGTGATTGTGTGACAGCACAAGGTGT
GTTAGATATTGCCGGAGTTGTCCCTCCAGATGCAACTGCACTGCTTTGGG
GTGCCATTAGCGCACATGCATTCGATAGAGTACGTTCCAGTGTCGATTCT
CTTCGCCTCCATGGATATGCTGCTTCTGATCTTCTCAATCGGTTGTCTGA
AGATACAATAGCAAGAGAAGATCTCTCTGATGCGCAACGAGCTCGAATTG
CCATCAAGCTTGCTCAAGCAGCTAAAAAACTTGCTGATGGTGCCGAAGAA
AGACTCCAACTCCTCGATGTTGCCACATATGCTGCCAGACAAAGTGCAGC
ACAATTGTTTGGAAGTGATTGTGTGACAGCACAAGGTGTGTTAGATATTG
CCGGAGTTGTCCCTCCAGATGCAACTGCACTGCTTTGGGGTGCCATTAGC
GCACATGCATTCGATAGAGTACGTTCCAGTGTCGATTCTCTTCGCCTCCA
TGGATATGCTGCTTCTGATCTTCTCAATCGGTTGTCTGAAGATACAATAG
CAAGAGAAGATCTCTCTGATGCGCAACGAGCTCGAATTGCCATCAAGCTT
GCTCAAGCAGCTAAAAAACTTGCTGATGGTGCCGAAGAAAGACTCCAACT
CCTCGATGTTGCCACATATGCTGCCAGA
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