mRNA_M-pyrifera_M_contig71935.17131.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71935.17131.1
Unique NamemRNA_M-pyrifera_M_contig71935.17131.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A5A8CS10_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CS10_CAFRO)

HSP 1 Score: 243 bits (620), Expect = 1.150e-69
Identity = 130/264 (49.24%), Postives = 176/264 (66.67%), Query Frame = 1
Query:   22 GSGSVTAVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVGD---IDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLR--ADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPM 798
            G+G V AV G+SLT+  G+C  LLGHNG+GKST L IL+GL  P+ G AE+ G DV  DV+ VQ  LG CPQ ++ W ELTAREHLQ FARLKGL G    +  EV + L++V+L   AD +AG+FSGGM+RRL + +A IG+P ++LLDEA+ GLDPV + E+W++I  L+   D+ +I+ THDL EA  L+DR  IM HGR+W  GS L+L+ R+G GY ++V+              +R  +P S +   DA SL  +VP+
Sbjct:  753 GAGDVLAVDGLSLTVKPGTCLGLLGHNGAGKSTLLKILSGLELPTEGVAEVNGFDVATDVASVQATLGTCPQHDLQWPELTAREHLQLFARLKGLQGGREALAHEVEERLEKVNLVDDADRAAGTFSGGMRRRLSVAVACIGNPSVILLDEAATGLDPVNRSELWRMILDLKRDGDKALIVTTHDLQEAELLSDRVAIMGHGRVWCVGSSLDLKGRYGGGYRVAVNAAQGREDAVAL--RMRELVPSSHIMSRDASSLTFTVPL 1014          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A2P6MVR8_9EUKA (ATP-binding cassette transporter subfamily A-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MVR8_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 6.690e-62
Identity = 111/253 (43.87%), Postives = 162/253 (64.03%), Query Frame = 1
Query:   40 AVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVG-DIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVP 795
            AV G+S T++ G    LLGHNG+GK+TT+N+LTGLF  + G A I GID+ ED+  V+R +GV PQ +ILW EL+A EHL+ FARLKG  G + + E+   L ++ L     H   +FSGGMKRRL + +A IG P+++ +DE S G+DPV +  +W++I  L+ +  +IL TH + EA  LADR  IMAHG++   G+ L LR ++G GY L +  E N     +    ++   PE  + R DAG++++ +P
Sbjct:  567 AVGGVSFTVEKGEIFCLLGHNGAGKTTTINMLTGLFPSTKGTAYINGIDIAEDMDAVRREMGVTPQHDILWAELSAIEHLRIFARLKGFTGAEAEREIQLRLNKMGLWDVRSHRVKTFSGGMKRRLSVAIATIGGPRVIFMDEPSTGMDPVNRRHMWEMIHQLKREASIILTTHSMEEAQNLADRITIMAHGKMVCLGNALHLRNKFGKGYRLELMTEENKV--EQIYREMKEICPEIQMNRCDAGNMLMDIP 817          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: I7M366_TETTS (Transporter family ABC domain protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M366_TETTS)

HSP 1 Score: 219 bits (557), Expect = 1.030e-61
Identity = 108/246 (43.90%), Postives = 163/246 (66.26%), Query Frame = 1
Query:   64 LDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGL-VGDIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPM 798
            +D G   A+LGHNG+GKST +NILTGL   S G A +LG D+   ++ +Q I+GVCPQ +ILW+ELTA EHLQ +  LKG+ VG I +E+N  LQ+V L      S G++SGGMKRR+ + ++AIG+PK++ +DE + G+DP  + E+W+++++L+ D+ ++L TH + EA AL+DR +++A G+L   G+ L L+  +  GY LSV  EP     +R    L++ LP   +     GS+V  VP+
Sbjct:  651 VDGGELIAILGHNGAGKSTMINILTGLLSASTGTANMLGFDINTQMAEIQSIMGVCPQFDILWDELTAEEHLQMYCMLKGIPVGMIPKEINTRLQEVGLFHVKKASVGTYSGGMKRRVSLAISAIGNPKIIFMDEPTTGMDPKTRREIWEMVKNLKRDKAIVLTTHAMEEAEALSDRIIVVAGGQLKCIGTSLYLKNHYSDGYRLSVVTEPQYVDYARI--ELKKLLPSCKIQDSSGGSIVACVPV 894          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A1R2C9P3_9CILI (ABC transporter domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C9P3_9CILI)

HSP 1 Score: 213 bits (543), Expect = 5.600e-60
Identity = 111/260 (42.69%), Postives = 165/260 (63.46%), Query Frame = 1
Query:   25 SGSVTAVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVGD-IDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLS-VSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPM 798
            S  + AV   SL+++     A+LGHNG+GKST +++LTGL  PS G A I G+D+ ED+  +++ILGVCPQ +ILW ELT REHL  F R+K L  D + +E ++ L QV L+   D   G+FSGGMKRRL + ++ +G PK+++LDE + G+DP+ +   WKLIQ ++ DR +IL TH + EA  L+DR  ++  G L   G+PL L+  +G G+ ++ +S  PN        + + R  P S +     GSLV+S+P+
Sbjct:  581 SSQIHAVNNFSLSIEKRELLAILGHNGAGKSTLISLLTGLAKPSYGSASIFGLDIAEDMKEIRKILGVCPQHDILWNELTPREHLILFGRMKNLPYDRVCKEADEKLCQVKLDYVKDKLVGTFSGGMKRRLSLAISGVGDPKIIILDEPTTGMDPINRRNAWKLIQEMKKDRVMILTTHSMEEADVLSDRVCVIVDGMLKCLGTPLYLKNNYGDGFRITLISKTPND-----LCQLISRTFPSSRLIDSSGGSLVISLPL 835          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A6B2KZ42_9EUKA (ABC transporter domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZ42_9EUKA)

HSP 1 Score: 208 bits (529), Expect = 3.620e-59
Identity = 104/215 (48.37%), Postives = 150/215 (69.77%), Query Frame = 1
Query:   40 AVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVGD-IDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSV 681
            AV GI LT+++G    LLGHNG+GKSTT+ +LTGLF  S G A I G  +  D+S ++R++GVCPQ +ILW+ LTA EHL+ FA L+ +  D I+EEV++ L+ V L  A    AGSFSGGM+RRL + +A IG+PK++ LDE + G+DP+++ +VW LI+ ++  R  +L TH + EA  LAD+  IM  GR+   G+ L L+K++G GY +S+
Sbjct:  352 AVKGIDLTINSGQLLCLLGHNGAGKSTTIGMLTGLFPCSGGDASIFGFSITTDMSDIRRVMGVCPQHDILWKSLTAEEHLELFAVLRDIPKDKIEEEVSERLKDVDLTFARKGLAGSFSGGMQRRLSVAIALIGNPKIVFLDEPTTGMDPISRRKVWNLIEKVKRGRVTLLTTHSMEEADILADKIAIMKDGRIATIGTSLRLKKKFGTGYDISI 566          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: G0R574_ICHMG (ABC transporter domain-containing protein (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R574_ICHMG)

HSP 1 Score: 209 bits (532), Expect = 1.320e-58
Identity = 101/250 (40.40%), Postives = 163/250 (65.20%), Query Frame = 1
Query:   52 ISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLV-GDIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPM 798
            I L ++ G   A+LGHNG+GKST +NILTGL  P++G AE++G D+  ++  +Q I+GVCPQ +ILW+ELTA EHL  F+ LKG+    +  ++   LQQVSL        G++SGGMKRR+ + ++AIG+PK++ +DE + G+DP  + E+W++I++L+ D+ V+L TH + EA  LADR V++A G L   G+PL L+  +  GY L++  +      +R   ++++ +P   +     G+++  VP+
Sbjct:  538 IYLEIEGGELLAILGHNGAGKSTLINILTGLLSPTSGTAEMMGYDINTEMKEIQSIMGVCPQFDILWDELTAEEHLYLFSLLKGVPQNQVQTQIKNSLQQVSLLNVMRAQVGTYSGGMKRRVSLAISAIGNPKIIFMDEPTTGMDPKTRREIWEMIRNLKKDKVVVLTTHAMEEAEVLADRIVVVAGGELKCIGTPLYLKNHYSDGYRLNLVTDQQNVDYARI--AIKQAIPSCKILDEKGGNIIACVPV 785          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A7S3IAC1_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IAC1_9CILI)

HSP 1 Score: 209 bits (531), Expect = 2.540e-58
Identity = 103/254 (40.55%), Postives = 167/254 (65.75%), Query Frame = 1
Query:   40 AVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVGD-IDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPM 798
            AV  +SL ++      LLGHNG+GKST +N+LTGL  P++G A++ G D+ E++  +++ LGVCPQ +ILW+ELTA+EH+  F R+KG+  + I+  + + L +V+L    D+ AG++SGGMKRRL + ++ IG+PK+++LDE + G+DP  K +VWKLI+ L+ +R +IL TH + EA  L+DR  ++  G L   G+ L L+  +G GY +++  +       R LE ++  +P   V  +  GS+V+S+ +
Sbjct:  575 AVKNLSLEIEKKELFTLLGHNGAGKSTLINMLTGLLSPTSGNAKVCGYDLVEEMDFIRKHLGVCPQHDILWDELTAKEHIILFGRIKGMTKEEIESVLEEKLSEVNLTEVGDNKAGTYSGGMKRRLSVALSGIGNPKIIILDEPTTGMDPQNKRDVWKLIKKLKQNRVMILTTHSMEEADVLSDRISVIVDGELKCLGTSLYLKNNFGEGYRVTLITK----NVERVLEIIKEIIPSGKVLDISGGSIVVSMKL 824          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: UPI0015FED85F (ATP-binding cassette sub-family A member 5-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FED85F)

HSP 1 Score: 210 bits (535), Expect = 2.730e-58
Identity = 112/262 (42.75%), Postives = 170/262 (64.89%), Query Frame = 1
Query:   34 VTAVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEE--DVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVGD-IDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPMRAVD 810
            V AV GIS  +      ALLGHNG+GK+T +N LTGL  P++G A I G  V +  ++ G++R+ G+CPQQNIL+++LTAREHL+FFA +KG+  + +D E  K+L+++ LE  AD  + + SGG KR+LC+G+A IG PK++ LDE ++G+DP ++  +W L++  R  + ++L TH + EA  LADR  I++ G L   GS L L+ R+G GY L +   P    T+   E ++  +PE+S+ R  A  L  ++P+  VD
Sbjct:  408 VVAVNGISFDIYEDQITALLGHNGAGKTTLVNALTGLLPPTSGTATIFGHHVTKPNEMQGIRRMTGLCPQQNILFDKLTAREHLRFFAGVKGIPEELVDSETEKLLREIDLEKQADVHSVNLSGGQKRKLCVGIAMIGDPKVIFLDEPTSGMDPYSRRHIWTLLKRKRQGKVIVLTTHFMDEADILADRKAIISKGTLRCAGSSLFLKNRFGVGYHLGIVTTPR-CNTAGVTEMIQSHIPEASLVRSHALELSYTLPLHRVD 668          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A5B8MIZ0_9CHLO (P-loop-containing nucleoside triphosphate hydrolase n=4 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MIZ0_9CHLO)

HSP 1 Score: 209 bits (531), Expect = 9.630e-58
Identity = 113/258 (43.80%), Postives = 160/258 (62.02%), Query Frame = 1
Query:   40 AVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLV-GDIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSVARVDAGSLVLSVPMRAVD 810
            AV  +S+ L+  S   LLGHNG+GKSTT+N+LTG+   S+G   I G +++ED+  VQ ++GV PQ + LW ELTA EHL+ +A +KG+  G ++ E +  L+ V L   AD    ++SGGMKRRL + +A IG PK + LDE + G+DPV K E W +IQ ++ DR V+L TH + EA  L DR  IM  GRL   G+ L L+  +G GY L V   P      +  E +  ++P+S + R +AGS+V  VP  +VD
Sbjct:  674 AVDRLSVQLEKDSVFCLLGHNGAGKSTTMNVLTGIISSSSGFVSICGHNLKEDLQEVQNLIGVSPQFDCLWGELTALEHLRIYAAVKGIEPGQVESEADYCLKYVDLMDVADKPTQTYSGGMKRRLSLAIALIGDPKAIFLDEPTTGMDPVHKQEAWSMIQKMKKDRIVVLTTHSMEEADCLGDRIGIMGSGRLQCVGTSLHLKNAYGSGYRLRVFA-PVKKHAVKLGEEILSKVPQSKLLRSNAGSMVFMVPFDSVD 930          
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Match: A0A646QF11_9MYRI (ATP-binding cassette sub-family A member 3 n=1 Tax=Hemiscolopendra marginata TaxID=943146 RepID=A0A646QF11_9MYRI)

HSP 1 Score: 208 bits (530), Expect = 1.290e-57
Identity = 102/240 (42.50%), Postives = 163/240 (67.92%), Query Frame = 1
Query:   40 AVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFHPSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLKGLVG-DIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKLLLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVIMAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPESSV 756
            AV  ISL +  G   ALLGHNG+GK+TT++ILTG+  P+AG A I GID+ ED+   +  +G+CPQ N+L++ LT +EHL FF +LKG    ++ +E+ ++L ++ L    +  +   SGGMKR+L +G+A IG  K+++LDE ++G+DP A+  +W L+Q +R +RC++L TH + EA  L+DR  IMAHG+++  GS + L+KR+G GY L++S+  +   T  +   ++R +PE+ +
Sbjct:  542 AVDDISLNIYKGQITALLGHNGAGKTTTMSILTGMIEPTAGTAYIEGIDISEDIDKARNSIGLCPQHNMLFDILTVKEHLMFFGKLKGANDKELKQEITELLTKLQLHDKRNTPSSQLSGGMKRKLHLGIALIGGTKVVMLDEPTSGMDPEARRAIWDLLQEMRKERCILLSTHFMEEADVLSDRIAIMAHGKIYCCGSTMFLKKRFGAGYHLNISISEDCDVTQLY-HLVQRHIPEAYI 780          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71935.17131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CS10_CAFRO1.150e-6949.24Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A2P6MVR8_9EUKA6.690e-6243.87ATP-binding cassette transporter subfamily A-like ... [more]
I7M366_TETTS1.030e-6143.90Transporter family ABC domain protein n=1 Tax=Tetr... [more]
A0A1R2C9P3_9CILI5.600e-6042.69ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6B2KZ42_9EUKA3.620e-5948.37ABC transporter domain-containing protein (Fragmen... [more]
G0R574_ICHMG1.320e-5840.40ABC transporter domain-containing protein (Fragmen... [more]
A0A7S3IAC1_9CILI2.540e-5840.55Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
UPI0015FED85F2.730e-5842.75ATP-binding cassette sub-family A member 5-like n=... [more]
A0A5B8MIZ0_9CHLO9.630e-5843.80P-loop-containing nucleoside triphosphate hydrolas... [more]
A0A646QF11_9MYRI1.290e-5742.50ATP-binding cassette sub-family A member 3 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71935contigM-pyrifera_M_contig71935:3..812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue5.4e-54
Seed eggNOG ortholog5911.EAS02432
KEGG koko:K05643
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702
EggNOG free text desc.AAA domain, putative AbiEii toxin, Type IV TA system
EggNOG OGs3ZB5B@5878,COG1131@1,KOG0059@2759
COG Functional cat.Q
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size810
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.0200005-CDS-M-pyrifera_M_contig71935:2..8121622816615.0200005-CDS-M-pyrifera_M_contig71935:2..812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71935 3..812 -
1692278078.7045283-CDS-M-pyrifera_M_contig71935:2..8121692278078.7045283-CDS-M-pyrifera_M_contig71935:2..812Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71935 3..812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71935.17131.1prot_M-pyrifera_M_contig71935.17131.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71935 3..812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71935.17131.1

>prot_M-pyrifera_M_contig71935.17131.1 ID=prot_M-pyrifera_M_contig71935.17131.1|Name=mRNA_M-pyrifera_M_contig71935.17131.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=270bp
VSSLHGAGSGSVTAVAGISLTLDTGSCCALLGHNGSGKSTTLNILTGLFH
PSAGRAEILGIDVEEDVSGVQRILGVCPQQNILWEELTAREHLQFFARLK
GLVGDIDEEVNKILQQVSLEGAADHSAGSFSGGMKRRLCIGMAAIGSPKL
LLLDEASAGLDPVAKVEVWKLIQSLRADRCVILCTHDLAEALALADRTVI
MAHGRLWAEGSPLELRKRWGHGYTLSVSVEPNPTTTSRFLESLRRRLPES
SVARVDAGSLVLSVPMRAVD
back to top

mRNA from alignment at M-pyrifera_M_contig71935:3..812-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71935.17131.1 ID=mRNA_M-pyrifera_M_contig71935.17131.1|Name=mRNA_M-pyrifera_M_contig71935.17131.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig71935:3..812- (Macrocystis pyrifera P11B4 male)
GTTTCATCCTTGCATGGTGCAGGAAGTGGGAGTGTGACAGCTGTAGCTGG CATTTCTCTCACGTTAGATACTGGAAGTTGCTGTGCATTGTTAGGTCACA ATGGGTCTGGGAAAAGTACAACTCTAAACATCCTCACAGGATTGTTTCAT CCAAGTGCAGGCCGCGCAGAAATCCTTGGAATTGATGTGGAGGAAGATGT TTCAGGTGTACAACGCATTCTTGGAGTGTGTCCTCAGCAAAACATCTTAT GGGAAGAACTCACAGCGAGAGAGCATTTGCAATTCTTTGCTCGTTTGAAG GGTTTAGTTGGTGATATTGATGAGGAAGTGAACAAGATCTTACAACAAGT TTCATTGGAAGGTGCAGCAGATCATTCTGCGGGTTCTTTCAGTGGTGGTA TGAAACGAAGGTTGTGTATTGGAATGGCAGCGATTGGGTCACCAAAACTC CTCCTCCTTGATGAAGCCAGTGCTGGGCTCGATCCTGTGGCGAAGGTTGA AGTGTGGAAATTGATTCAAAGTCTTCGAGCAGACCGTTGTGTCATTTTGT GTACTCATGACCTTGCTGAAGCACTTGCTTTGGCAGATCGTACAGTCATC ATGGCACATGGTCGTTTGTGGGCCGAGGGTAGTCCATTGGAGCTTCGAAA ACGATGGGGACATGGATACACATTGAGTGTCTCTGTTGAACCAAACCCAA CAACAACCTCTCGCTTTCTGGAATCCCTTCGTCGTCGTCTCCCAGAATCC TCCGTTGCACGTGTTGATGCTGGATCTCTTGTGTTGTCAGTTCCAATGCG AGCAGTTGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71935:3..812-

>mRNA_M-pyrifera_M_contig71935.17131.1 ID=mRNA_M-pyrifera_M_contig71935.17131.1|Name=mRNA_M-pyrifera_M_contig71935.17131.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1620bp|location=Sequence derived from alignment at M-pyrifera_M_contig71935:3..812- (Macrocystis pyrifera P11B4 male)
GTTTCATCCTTGCATGGTGCAGGAAGTGGGAGTGTGACAGCTGTAGCTGG
CATTTCTCTCACGTTAGATACTGGAAGTTGCTGTGCATTGTTAGGTCACA
ATGGGTCTGGGAAAAGTACAACTCTAAACATCCTCACAGGATTGTTTCAT
CCAAGTGCAGGCCGCGCAGAAATCCTTGGAATTGATGTGGAGGAAGATGT
TTCAGGTGTACAACGCATTCTTGGAGTGTGTCCTCAGCAAAACATCTTAT
GGGAAGAACTCACAGCGAGAGAGCATTTGCAATTCTTTGCTCGTTTGAAG
GGTTTAGTTGGTGATATTGATGAGGAAGTGAACAAGATCTTACAACAAGT
TTCATTGGAAGGTGCAGCAGATCATTCTGCGGGTTCTTTCAGTGGTGGTA
TGAAACGAAGGTTGTGTATTGGAATGGCAGCGATTGGGTCACCAAAACTC
CTCCTCCTTGATGAAGCCAGTGCTGGGCTCGATCCTGTGGCGAAGGTTGA
AGTGTGGAAATTGATTCAAAGTCTTCGAGCAGACCGTTGTGTCATTTTGT
GTACTCATGACCTTGCTGAAGCACTTGCTTTGGCAGATCGTACAGTCATC
ATGGCACATGGTCGTTTGTGGGCCGAGGGTAGTCCATTGGAGCTTCGAAA
ACGATGGGGACATGGATACACATTGAGTGTCTCTGTTGAACCAAACCCAA
CAACAACCTCTCGCTTTCTGGAATCCCTTCGTCGTCGTCTCCCAGAATCC
TCCGTTGCACGTGTTGATGCTGGATCTCTTGTGTTGTCAGTTCCAATGCG
AGCAGTTGATGTTTCATCCTTGCATGGTGCAGGAAGTGGGAGTGTGACAG
CTGTAGCTGGCATTTCTCTCACGTTAGATACTGGAAGTTGCTGTGCATTG
TTAGGTCACAATGGGTCTGGGAAAAGTACAACTCTAAACATCCTCACAGG
ATTGTTTCATCCAAGTGCAGGCCGCGCAGAAATCCTTGGAATTGATGTGG
AGGAAGATGTTTCAGGTGTACAACGCATTCTTGGAGTGTGTCCTCAGCAA
AACATCTTATGGGAAGAACTCACAGCGAGAGAGCATTTGCAATTCTTTGC
TCGTTTGAAGGGTTTAGTTGGTGATATTGATGAGGAAGTGAACAAGATCT
TACAACAAGTTTCATTGGAAGGTGCAGCAGATCATTCTGCGGGTTCTTTC
AGTGGTGGTATGAAACGAAGGTTGTGTATTGGAATGGCAGCGATTGGGTC
ACCAAAACTCCTCCTCCTTGATGAAGCCAGTGCTGGGCTCGATCCTGTGG
CGAAGGTTGAAGTGTGGAAATTGATTCAAAGTCTTCGAGCAGACCGTTGT
GTCATTTTGTGTACTCATGACCTTGCTGAAGCACTTGCTTTGGCAGATCG
TACAGTCATCATGGCACATGGTCGTTTGTGGGCCGAGGGTAGTCCATTGG
AGCTTCGAAAACGATGGGGACATGGATACACATTGAGTGTCTCTGTTGAA
CCAAACCCAACAACAACCTCTCGCTTTCTGGAATCCCTTCGTCGTCGTCT
CCCAGAATCCTCCGTTGCACGTGTTGATGCTGGATCTCTTGTGTTGTCAG
TTCCAATGCGAGCAGTTGAT
back to top