prot_M-pyrifera_M_contig71195.16981.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig71195.16981.1
Unique Nameprot_M-pyrifera_M_contig71195.16981.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length71
Homology
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: C1BS50_LEPSM (DNA-directed RNA polymerase subunit n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=C1BS50_LEPSM)

HSP 1 Score: 105 bits (262), Expect = 5.870e-28
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0
Query:   12 VDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 69
            VDDVLGG  AW+NVD T+ TCPNC+H RAY+ Q+QTRSADEPMTTFY+CVSC H W+E
Sbjct:   51 VDDVLGGSAAWENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVSCGHRWRE 108          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A095C664_CRYGR (DNA-directed RNA polymerase subunit n=9 Tax=Cryptococcaceae TaxID=1884633 RepID=A0A095C664_CRYGR)

HSP 1 Score: 103 bits (258), Expect = 2.380e-27
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0
Query:    5 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 70
            T L +  VDDVLGG +AW NVD+TDT CP C+H+RAY+RQ+Q RSADEPMTTFY+C  C H W+E 
Sbjct:   43 THLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREN 108          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A7S3BLY1_9VIRI (DNA-directed RNA polymerase subunit n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BLY1_9VIRI)

HSP 1 Score: 104 bits (259), Expect = 2.650e-27
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 0
Query:    3 QSTVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 70
            Q   L +  VDDVLGGD+AW+NVD+T T CP C H  AYY Q+Q RSADEPM+TFY+CV C H W+EG
Sbjct:   57 QDVPLVRKQVDDVLGGDEAWENVDKTLTKCPQCAHNEAYYMQIQIRSADEPMSTFYKCVKCSHRWREG 124          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: UPI001D025382 (DNA-directed RNA polymerase III subunit RPC10 n=1 Tax=Cotesia glomerata TaxID=32391 RepID=UPI001D025382)

HSP 1 Score: 103 bits (257), Expect = 3.200e-27
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 0
Query:   12 VDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 70
            +DDVLGG++AW NV+ T+ TCP C+HKRAY+ Q+QTRSADEPMT FYRC  C +NWKEG
Sbjct:   48 IDDVLGGEEAWKNVESTEVTCPTCSHKRAYFMQLQTRSADEPMTLFYRCAQCAYNWKEG 106          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A7R9ZVT4_9DINO (DNA-directed RNA polymerase subunit n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZVT4_9DINO)

HSP 1 Score: 103 bits (257), Expect = 3.480e-27
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0
Query:    7 LTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 69
            + +  VDDVLGG +AW +VDQTD  CP C + RAY+R +QTRSADEPMTTFYRCV+C HNWKE
Sbjct:   46 IPRKEVDDVLGGSEAWKDVDQTDAHCPRCTNNRAYFRMMQTRSADEPMTTFYRCVNCAHNWKE 108          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A854QDF7_CRYNV (DNA-directed RNA polymerase subunit n=1 Tax=Cryptococcus neoformans var. grubii Tu259-1 TaxID=1230072 RepID=A0A854QDF7_CRYNV)

HSP 1 Score: 103 bits (258), Expect = 4.210e-27
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0
Query:    5 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 70
            T L +  VDDVLGG +AW NVD+TDT CP C+H+RAY+RQ+Q RSADEPMTTFY+C  C H W+E 
Sbjct:   63 THLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWREN 128          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A813E493_POLGL (DNA-directed RNA polymerase subunit n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E493_POLGL)

HSP 1 Score: 102 bits (255), Expect = 7.020e-27
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 0
Query:    7 LTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKEG 70
            + +  VDDVLGG  AW +VDQ D  CPNC+H RAY++Q+QTRSADEPMT FYRC  C +NWKEG
Sbjct:   46 MPRKEVDDVLGGSDAWKDVDQCDAQCPNCSHSRAYFKQMQTRSADEPMTIFYRCTQCANNWKEG 109          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A812W3S3_9DINO (DNA-directed RNA polymerase subunit n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812W3S3_9DINO)

HSP 1 Score: 102 bits (254), Expect = 9.970e-27
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0
Query:    6 VLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 69
            V+ +  VDDVLGG +AW +V+Q D  CP C H RAY+RQ+QTRSADEPMTTFYRC  C HNWKE
Sbjct:   45 VVIRKEVDDVLGGSEAWKDVEQCDAHCPKCAHSRAYFRQMQTRSADEPMTTFYRCTQCGHNWKE 108          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A4P9Z162_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z162_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.950e-26
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    5 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVS--CKHNWKE 69
            T+L +  VDDVLGG KAW+NVD T  TCP C H RAYY Q+QTRSADEPMTTFY+C +  C H W+E
Sbjct:   41 TILQRKEVDDVLGGAKAWENVDSTPETCPKCEHSRAYYMQIQTRSADEPMTTFYKCCNHACGHQWRE 107          
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Match: A0A139AN53_GONPJ (DNA-directed RNA polymerase subunit n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AN53_GONPJ)

HSP 1 Score: 101 bits (251), Expect = 2.550e-26
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 0
Query:    5 TVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSADEPMTTFYRCVSCKHNWKE 69
            T   +  VDDVLGG+KAW+NVDQ D  CP C H RAY+ Q+QTRSADEPMTTFY+CV C   W+E
Sbjct:   40 TSFKRKKVDDVLGGEKAWENVDQADAQCPKCQHHRAYFMQIQTRSADEPMTTFYKCVKCGTQWRE 104          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71195.16981.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1BS50_LEPSM5.870e-2874.14DNA-directed RNA polymerase subunit n=1 Tax=Lepeop... [more]
A0A095C664_CRYGR2.380e-2765.15DNA-directed RNA polymerase subunit n=9 Tax=Crypto... [more]
A0A7S3BLY1_9VIRI2.650e-2763.24DNA-directed RNA polymerase subunit n=1 Tax=Prasin... [more]
UPI001D0253823.200e-2769.49DNA-directed RNA polymerase III subunit RPC10 n=1 ... [more]
A0A7R9ZVT4_9DINO3.480e-2768.25DNA-directed RNA polymerase subunit n=1 Tax=Pyrodi... [more]
A0A854QDF7_CRYNV4.210e-2765.15DNA-directed RNA polymerase subunit n=1 Tax=Crypto... [more]
A0A813E493_POLGL7.020e-2765.63DNA-directed RNA polymerase subunit n=1 Tax=Polare... [more]
A0A812W3S3_9DINO9.970e-2767.19DNA-directed RNA polymerase subunit n=4 Tax=Symbio... [more]
A0A4P9Z162_9FUNG1.950e-2665.67DNA-directed RNA polymerase subunit n=1 Tax=Syncep... [more]
A0A139AN53_GONPJ2.550e-2664.62DNA-directed RNA polymerase subunit n=1 Tax=Gonapo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 30..69
e-value: 4.2E-22
score: 89.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 31..68
e-value: 1.2E-21
score: 76.3
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 32..67
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 28..68
score: 15.527
NoneNo IPR availableGENE3D2.20.25.10coord: 18..70
e-value: 8.3E-25
score: 87.8
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 4..68
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 4..68
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 12..70
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..70
e-value: 4.3E-21
score: 73.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71195contigM-pyrifera_M_contig71195:481..835 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71195.16981.1mRNA_M-pyrifera_M_contig71195.16981.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig71195 481..835 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig71195.16981.1 ID=prot_M-pyrifera_M_contig71195.16981.1|Name=mRNA_M-pyrifera_M_contig71195.16981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
HAQSTVLTKAAVDDVLGGDKAWDNVDQTDTTCPNCNHKRAYYRQVQTRSA
DEPMTTFYRCVSCKHNWKEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS