mRNA_M-pyrifera_M_contig7101.16950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7101.16950.1
Unique NamemRNA_M-pyrifera_M_contig7101.16950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A835YWS7_9STRA (Cyanate hydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS7_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.460e-34
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RSFD  ++ EPL+YRL EAV+HYGE LK I+NEKFGDGIMSAIDF  +VDK KG  GEDRVVITFNGKFLPHVEQ
Sbjct:   85 RSFDPEIQQEPLIYRLDEAVMHYGEALKQIINEKFGDGIMSAIDFSCSVDKAKGQHGEDRVVITFNGKFLPHVEQ 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A4D9D3J5_9STRA (Cyanate_lyase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3J5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.040e-32
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 RSFDESV-RDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RS+D  V R EPLVYRL EAVLHYG G+K+IVNEKFGDGIMSAID Y TV++VKG QGE RVV+T NGKFLPHVEQ
Sbjct:   48 RSYDRDVLRTEPLVYRLEEAVLHYGLGIKAIVNEKFGDGIMSAIDMYATVERVKGPQGEPRVVLTLNGKFLPHVEQ 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A0J6YW13_9BACT (Cyanate hydratase n=2 Tax=Candidatus Nitromaritima TaxID=2814657 RepID=A0A0J6YW13_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.700e-32
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQTK 231
            RS+D S+  EP +YR+ E  LHYG+G+K+I+NE+FGDGIMSAIDF LT+DK+KG +GEDR+V+T NGKFLPH+EQ K
Sbjct:   74 RSYDPSIIQEPNIYRMTEVCLHYGQGIKAIMNEQFGDGIMSAIDFKLTIDKIKGSKGEDRMVVTMNGKFLPHIEQEK 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A2P6TGR3_CHLSO (Cyanate hydratase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGR3_CHLSO)

HSP 1 Score: 119 bits (298), Expect = 1.760e-32
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            R +D  +  EP VYR++EAV HYGE LK+I+NE+FGDGIMSAIDFY TVDK+KG  GEDR VITFNGKFLPHVEQ
Sbjct:   92 RGWDPELAQEPHVYRMLEAVHHYGEALKAIINEQFGDGIMSAIDFYCTVDKIKGKHGEDRAVITFNGKFLPHVEQ 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: E1ZMV9_CHLVA (Cyanate hydratase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZMV9_CHLVA)

HSP 1 Score: 119 bits (299), Expect = 2.860e-32
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RSFD ++ +EPL+YR++EA+ HYGE LK +VNE+FGDGIMSAIDFY+TVD++ G QGE RV IT NGKFLPHVEQ
Sbjct:  119 RSFDPAILEEPLIYRMIEAINHYGEALKCLVNEQFGDGIMSAIDFYVTVDRITGKQGEARVAITLNGKFLPHVEQ 193
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A8K0HTT2_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HTT2_9ROSA)

HSP 1 Score: 116 bits (290), Expect = 4.300e-31
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RS+D S+  EP VYRL EAV+H+GE +K I+NE+FGDGIMSAIDFY +VDKVKG+ G+DRVV+TF+GK+LPH EQ
Sbjct:   76 RSYDPSLIQEPSVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVVTFDGKYLPHTEQ 150
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A371G5Q6_MUCPR (Cyanate hydratase n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371G5Q6_MUCPR)

HSP 1 Score: 115 bits (287), Expect = 4.430e-31
Identity = 50/77 (64.94%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQTK 231
            RS+D ++  +P VYRL EAV+H+GE +K I+NE+FGDGIMSAIDFY +VDK+KG+ G+DRVV+TF+GK+LPH EQ K
Sbjct:   76 RSYDPNLIQDPTVYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKIKGVDGKDRVVVTFDGKYLPHSEQVK 152
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A2G9IA87_9LAMI (Cyanate hydratase n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9IA87_9LAMI)

HSP 1 Score: 115 bits (288), Expect = 5.450e-31
Identity = 51/76 (67.11%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQT 228
            RS+D ++  +P VYRL EAV+H+GE +K I+NE FGDGIMSAIDFY +VDKVKG+ G+DRVV+TF+GK+LPH EQT
Sbjct:   80 RSYDPNLIQDPTVYRLHEAVMHFGESIKEIINEDFGDGIMSAIDFYCSVDKVKGVDGKDRVVVTFDGKYLPHTEQT 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A176VHU2_MARPO (Cyanate hydratase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VHU2_MARPO)

HSP 1 Score: 115 bits (287), Expect = 5.710e-31
Identity = 49/75 (65.33%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RSFD ++  +P +YRL EA++HYGE +K I+NE+ GDGIMSAI FY TV+K+KG +GEDRVV+T NGKFLPH+EQ
Sbjct:   77 RSFDPTITQDPTIYRLYEAIMHYGESIKDIINEECGDGIMSAIGFYCTVNKIKGKEGEDRVVVTMNGKFLPHIEQ 151
[Close]
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Match: A0A835D528_9MAGN (Cyanate hydratase n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835D528_9MAGN)

HSP 1 Score: 115 bits (287), Expect = 6.930e-31
Identity = 50/75 (66.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVDKVKGLQGEDRVVITFNGKFLPHVEQ 225
            RS+D ++  EP +YRL EAV+H+GE +K I+NE+FGDGIMSAIDFY +VDKVKG+ G+DRVV+TF+GK+LPH EQ
Sbjct:   76 RSYDPNLLQEPTIYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVLTFDGKYLPHTEQ 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7101.16950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWS7_9STRA1.460e-3477.33Cyanate hydratase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D3J5_9STRA1.040e-3277.63Cyanate_lyase domain-containing protein n=1 Tax=Na... [more]
A0A0J6YW13_9BACT1.700e-3266.23Cyanate hydratase n=2 Tax=Candidatus Nitromaritima... [more]
A0A2P6TGR3_CHLSO1.760e-3273.33Cyanate hydratase n=1 Tax=Chlorella sorokiniana Ta... [more]
E1ZMV9_CHLVA2.860e-3270.67Cyanate hydratase n=1 Tax=Chlorella variabilis Tax... [more]
A0A8K0HTT2_9ROSA4.300e-3169.33Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A371G5Q6_MUCPR4.430e-3164.94Cyanate hydratase n=1 Tax=Mucuna pruriens TaxID=15... [more]
A0A2G9IA87_9LAMI5.450e-3167.11Cyanate hydratase n=2 Tax=Handroanthus impetiginos... [more]
A0A176VHU2_MARPO5.710e-3165.33Cyanate hydratase n=2 Tax=Marchantia polymorpha Ta... [more]
A0A835D528_9MAGN6.930e-3166.67Cyanate hydratase n=1 Tax=Tetracentron sinense Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7101contigM-pyrifera_M_contig7101:3605..4985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score120.9
Seed ortholog evalue2.5e-25
Seed eggNOG ortholog554065.XP_005844860.1
Preferred nameCYN
KEGG rclassRC00952
KEGG koko:K01725
KEGG ReactionR03546,R10079
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0008824,GO:0016829,GO:0016840
EggNOG free text desc.Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
EggNOG OGs2RY7W@2759,34NF4@3041,37RAJ@33090,COG1513@1
EC4.2.1.104
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size231
Cds size231
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7101.16950.1prot_M-pyrifera_M_contig7101.16950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7101 3605..4985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.8062205-CDS-M-pyrifera_M_contig7101:3604..36821622816604.8062205-CDS-M-pyrifera_M_contig7101:3604..3682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 3605..3682 -
1692278072.729883-CDS-M-pyrifera_M_contig7101:3604..36821692278072.729883-CDS-M-pyrifera_M_contig7101:3604..3682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 3605..3682 -
1622816604.8185155-CDS-M-pyrifera_M_contig7101:4151..42291622816604.8185155-CDS-M-pyrifera_M_contig7101:4151..4229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 4152..4229 -
1692278072.7461598-CDS-M-pyrifera_M_contig7101:4151..42291692278072.7461598-CDS-M-pyrifera_M_contig7101:4151..4229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 4152..4229 -
1622816604.8312669-CDS-M-pyrifera_M_contig7101:4910..49851622816604.8312669-CDS-M-pyrifera_M_contig7101:4910..4985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 4911..4985 -
1692278072.758173-CDS-M-pyrifera_M_contig7101:4910..49851692278072.758173-CDS-M-pyrifera_M_contig7101:4910..4985Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7101 4911..4985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7101.16950.1

>prot_M-pyrifera_M_contig7101.16950.1 ID=prot_M-pyrifera_M_contig7101.16950.1|Name=mRNA_M-pyrifera_M_contig7101.16950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
RSFDESVRDEPLVYRLVEAVLHYGEGLKSIVNEKFGDGIMSAIDFYLTVD
KVKGLQGEDRVVITFNGKFLPHVEQTK
back to top

mRNA from alignment at M-pyrifera_M_contig7101:3605..4985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7101.16950.1 ID=mRNA_M-pyrifera_M_contig7101.16950.1|Name=mRNA_M-pyrifera_M_contig7101.16950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1381bp|location=Sequence derived from alignment at M-pyrifera_M_contig7101:3605..4985- (Macrocystis pyrifera P11B4 male)
AGATCGTTTGATGAAAGTGTTCGAGACGAACCCTTGGTTTACCGTTTGGT
GGAAGCTGTTCTGCACTACGGCGAGGTGAGAAAAGCAGTGAACGCTGTCT
GGGTTTGCCACAATGACCAAGGGGGGCATGTAGACTACGTAAATACTCGT
CTTTTTTTATAAAGGCTACCCATCTCCCGGCGAACTTTCGGGTTTGGAGG
CTTTCGTGGTCAAGAGCTGTGTGTGAAGTGTCACGGCCTATCCTAAATAG
CGACTACGTACGTCCCTGCGAAGCAAACAAATGGTTGCCTGCTTTCGTTG
TCGATGCGTCCACTCTACTCGCGCGCGTGCTCGAACTCATGGTACGAGTA
GCCTGCCACTGCGACGATCTAGGGTACCGATTAGACAAGGGCACGGACGC
GGTGCACGTGCACCGTTCACACATCCACTCGTACCGCGGTAGGAGTACCA
GGTATACCGTTTTACGCTCAATATTGTCTGACCGGTTGAGCTCCTCGAGT
TAGAAACTTCTGTACTGGGTTAGTACCATATATTTACGAGAATATGTGCT
CGAGGACTAGCACGGAGAAAAGCTGGTCGGGTTGCGCGCCCAAACAAACT
TATCCGAAATCATGTTTCGACGGAGATATTGAGGTCTTCACGTGAGGAAT
TTAGCATATAAAGTAAGAGTAAAGTAGTAGCCATCTCTACCGTGACATTG
TTCGTCGGTCGTCTGAATGATGAAAGAAAACTGCGCTATCGCCTCGGATG
AAACAGGGTCTGAAGAGCATCGTGAACGAGAAGTTCGGGGACGGTATCAT
GTCCGCAATCGACTTTTACCTTACGGTGGACAAGGTATGTTGCCGATCCC
TATCAGATTATGCCGAGGAAACGATCGCCGAAACCTGTTCGGGGTGCTTA
CGTGGTCCTTCGACCTTCATGAAAGTGTTGGTGGCTGTTGTTGAAAGTCC
GGAACGCGAACTTTATGGCCTGGACTTCTCTGCACGACATTACGGACGTG
TTCAGCGCCGCCTTCCGTGCCGGCATGGCGTGAACATAGTGATCAGATGC
TCCATATGCGATGGATGGAGTGACACGTACTGGCAGCAAGTATCCCTCCC
CGACCACTGGTGCGTTTGAGCGCTATGAATAGTGTCATTGGGACGCCGCT
TCATGGTAATTCCTGTTCGTACCCCCGGTGATGACTTTGCTGTGGTAGAA
TATGCTTTGAGCGGTACGGAGGTCGGCACTGCTTATAGTCGTAATGGACA
CCCCTACCCCGCCCCATGACCGTGTTATTTGTCACCGTCCGTTGCTTTTA
AAGGTGAAGGGATTGCAAGGGGAAGACCGTGTGGTTATCACCTTCAACGG
GAAGTTCTTGCCCCACGTCGAGCAGACCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7101:3605..4985-

>mRNA_M-pyrifera_M_contig7101.16950.1 ID=mRNA_M-pyrifera_M_contig7101.16950.1|Name=mRNA_M-pyrifera_M_contig7101.16950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig7101:3605..4985- (Macrocystis pyrifera P11B4 male)
AGATCGTTTGATGAAAGTGTTCGAGACGAACCCTTGGTTTACCGTTTGGT
GGAAGCTGTTCTGCACTACGGCGAGAGATCGTTTGATGAAAGTGTTCGAG
ACGAACCCTTGGTTTACCGTTTGGTGGAAGCTGTTCTGCACTACGGCGAG
GGTCTGAAGAGCATCGTGAACGAGAAGTTCGGGGACGGTATCATGTCCGC
AATCGACTTTTACCTTACGGTGGACAAGGGTCTGAAGAGCATCGTGAACG
AGAAGTTCGGGGACGGTATCATGTCCGCAATCGACTTTTACCTTACGGTG
GACAAGGTGAAGGGATTGCAAGGGGAAGACCGTGTGGTTATCACCTTCAA
CGGGAAGTTCTTGCCCCACGTCGAGCAGACCAAGGTGAAGGGATTGCAAG
GGGAAGACCGTGTGGTTATCACCTTCAACGGGAAGTTCTTGCCCCACGTC
GAGCAGACCAAG
back to top