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Homology
BLAST of mRNA_M-pyrifera_M_contig707.16879.1 vs. uniprot
Match: D7G2Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z6_ECTSI) HSP 1 Score: 227 bits (578), Expect = 1.080e-72 Identity = 107/152 (70.39%), Postives = 130/152 (85.53%), Query Frame = 3
Query: 54 PTRSSSDAKWLQVLDKAPEMEAGSVKVVSGKYKGDDKFFALAKYGGKFFAVSEACGRCKFPMINGRVKVLLGDGKAEDVKEGVEEDPEADVGIGCPLCGAMFDMRTGAIAGEQPKGLAQTFVSKIVSQSDVESVTPYQAQELSSGVIVVRVD 509
P+ ++S+AKWLQVLD E+E GSVKVVSGKYKG+D+ F LA YGG ++AVSEACGRCKFP+ING+VK+L G GKAEDVK GVE+DPEA++ I CPLCGAMF++RTG IAGEQPKGLAQ VSK+VSQ+ ES+T +QAQ LS+G +VVRVD
Sbjct: 66 PSGATSNAKWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGEIAGEQPKGLAQVLVSKVVSQTPAESITTHQAQVLSTGAVVVRVD 217
BLAST of mRNA_M-pyrifera_M_contig707.16879.1 vs. uniprot
Match: W7TAQ7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAQ7_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.790e-8 Identity = 45/145 (31.03%), Postives = 69/145 (47.59%), Query Frame = 3
Query: 81 WLQVLDKAPEME--AGSVKVVSGKYKGDDKFFALAKYG-GKFFAVSEACGRCKFPMINGRVKVLLGDGKAEDVKEGVEEDPEADVGIGCPLCGAMFDMRTGAIAGEQPKGLAQTFVSKIVSQSDVESVTPYQAQELSSGVIVVRV 506
+ +VLD E+ GS K V G K DDKF L + G+ A+ CGRCKFP++ G+V +ED VE+D + + I CPLC F + +G + G Q + Q + S+ + Y A + G + ++
Sbjct: 104 FTKVLDVGSELADAEGSQKAV-GPLK-DDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKV--------SEDPS--VEDDEDKGI-ITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 235
BLAST of mRNA_M-pyrifera_M_contig707.16879.1 vs. uniprot
Match: A0A7S2USE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 4.600e-8 Identity = 37/147 (25.17%), Postives = 68/147 (46.26%), Query Frame = 3
Query: 81 WLQVLDKAPEMEA--GSVKVVS-GKYKGDDKFFALAKYGGKFFAVSEACGRCKFPMINGRVKVLLGDGKAEDVKEGVEEDPEADVGIGCPLCGAMFDMRTGAIAGE---QPKGLAQTFVSKIVSQSDVESVTPYQAQELSSGVIVVR 503
W+QV + +M++ G+ K V G + ++ GK + CGRC+FP+ING++ D + + I CPLCG F + +G E Q KGL Q + + ++ +++ Y+ +E + G + ++
Sbjct: 93 WIQVFESDEDMDSKEGATKAVEITDPLGKPAPVLMIRHEGKISSTEIGCGRCQFPLINGKIM-----------------DQDGEPHIECPLCGCGFSLSSGVYKEEMDGQSKGLMQNMMGGFMGKTTPKNIKVYRTEENNVGEVYIK 222
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Rieske [2Fe-2S] iron-sulphur domain |
Ec32 ortholog | Ec-09_004280.1 |
Exons | 5 |
Model size | 537 |
Cds size | 402 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816600.603466-UTR-M-pyrifera_M_contig707:4700..4789 | 1622816600.603466-UTR-M-pyrifera_M_contig707:4700..4789 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 4701..4789 + |
1692278070.3955011-UTR-M-pyrifera_M_contig707:4700..4789 | 1692278070.3955011-UTR-M-pyrifera_M_contig707:4700..4789 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 4701..4789 + |
1622816600.616205-UTR-M-pyrifera_M_contig707:5918..5939 | 1622816600.616205-UTR-M-pyrifera_M_contig707:5918..5939 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 5919..5939 + |
1692278070.4075797-UTR-M-pyrifera_M_contig707:5918..5939 | 1692278070.4075797-UTR-M-pyrifera_M_contig707:5918..5939 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 5919..5939 + |
1622816600.6731892-UTR-M-pyrifera_M_contig707:9880..9905 | 1622816600.6731892-UTR-M-pyrifera_M_contig707:9880..9905 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 9881..9905 + |
1692278070.4559937-UTR-M-pyrifera_M_contig707:9880..9905 | 1692278070.4559937-UTR-M-pyrifera_M_contig707:9880..9905 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig707 9881..9905 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816600.6269789-CDS-M-pyrifera_M_contig707:5939..5960 | 1622816600.6269789-CDS-M-pyrifera_M_contig707:5939..5960 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 5940..5960 + |
1692278070.418727-CDS-M-pyrifera_M_contig707:5939..5960 | 1692278070.418727-CDS-M-pyrifera_M_contig707:5939..5960 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 5940..5960 + |
1622816600.6377423-CDS-M-pyrifera_M_contig707:6445..6553 | 1622816600.6377423-CDS-M-pyrifera_M_contig707:6445..6553 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 6446..6553 + |
1692278070.428035-CDS-M-pyrifera_M_contig707:6445..6553 | 1692278070.428035-CDS-M-pyrifera_M_contig707:6445..6553 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 6446..6553 + |
1622816600.6482472-CDS-M-pyrifera_M_contig707:8780..8913 | 1622816600.6482472-CDS-M-pyrifera_M_contig707:8780..8913 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 8781..8913 + |
1692278070.4370396-CDS-M-pyrifera_M_contig707:8780..8913 | 1692278070.4370396-CDS-M-pyrifera_M_contig707:8780..8913 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 8781..8913 + |
1622816600.661223-CDS-M-pyrifera_M_contig707:9740..9880 | 1622816600.661223-CDS-M-pyrifera_M_contig707:9740..9880 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 9741..9880 + |
1692278070.446692-CDS-M-pyrifera_M_contig707:9740..9880 | 1692278070.446692-CDS-M-pyrifera_M_contig707:9740..9880 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig707 9741..9880 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig707.16879.1 >prot_M-pyrifera_M_contig707.16879.1 ID=prot_M-pyrifera_M_contig707.16879.1|Name=mRNA_M-pyrifera_M_contig707.16879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MEAGSVKVVSGKYKGDDKFFALAKYGGKFFAVSEACGRCKFPMINGRVKV LLGDGKAEDVKEGVEEDPEADVGIGCPLCGAMFDMRTGAIAGEQPKGLAQ TFVSKIVSQSDVESVTPYQAQELSSGVIVVRVD* back to topmRNA from alignment at M-pyrifera_M_contig707:4701..9905+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig707.16879.1 ID=mRNA_M-pyrifera_M_contig707.16879.1|Name=mRNA_M-pyrifera_M_contig707.16879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5205bp|location=Sequence derived from alignment at M-pyrifera_M_contig707:4701..9905+ (Macrocystis pyrifera P11B4 male) GAATTATCGAGAGCCGCAAGAAGAAAGCGGCAACCGCAAACGCCCCCGCC
AAGCCCACCAGGTCATCGTCGGACGCGAAGTGGCTGCAGGTGCGCACGAC
TTGCCCAATCCTTTCACATGTCGGACAGATCAGATAGGTCAGATAGATCA
CATAGATCATCTACGTCACCTAGATCCTGACCTGCCGTTCTGAGGTGATG
TGCAGGATCTGTATGCTGTACGTAGTACAAATCTAACCCAGGAAAAATGA
CCAGATTGTGTGACTCCCACCCGGCAACGTGAGATAGATCCTACAGATCG
TACAGATGAGGGAGATATCTGCCGTGAAAGATCTAGATCATCAAGTGGGC
AACGATGAGCTGTTCAAGGTGTCCGAGGTGTCCTTACAGTACGTGACGCC
GGTAGGGTTAAATATACAAACCCTTCTAAGAGTTCAAAGGAAAGAGGCGA
TGGCCAGGAATGACAGTCACAGCATCGGGCACTGGGGCAGCGCCAATTGG
AACACTAAAACTGCAGAACTAATTGCAACCCACACGATTACGACTGGCGC
TTCGAGCGCTCGGACTCCGGCGGCTCCTGTCGAGGGTTGATATATATATA
TATATATATATATATATTGCTGCGCCACTACGCAGGAACAGGATTTCAAA
TGGGATCAGGTATTCAGGTGTGCTCGATCGGGGTTAGCCTGACAGCACGT
TTCGCCCCGAAGCACTAAAACACCCATAAATGGCGTGTAGGTTGCAAGTT
AGTGCTGCAGTACCAGGGTTGCCATCAGCCATGCTCCGGCCACTGCTCGG
TTGGGGGTTTATGAGGTCAGGTGTCCGGACTACAACGCACGGAGTCGATA
TAGACGACACGGGAGCAGTATGATCCTTGCTACTTGGACTGCCTCGCGCT
CACACTGCTCAGATGCTTCTATATGTTCGTCTTAAACATCTCTTTTATTT
TCCAGCTCTGTGGACAAGCCGTGGTGGCAGGTGTCTCCCCTTCTCTCCTC
CGGTATAGACAGGCCTTCATTCACGTCCAGTAGACTGCTCGTCGATTTTC
AACGATGTTAGGCTCTCAAGCTTTCCGCGGGTAGACAGAGTTGATTCGAC
CGAACTTGTCATTTTGTTTGGTCGCTACGTTTCTCTGGGTCCCTGAAAAG
ATTAATTCGAAGTTCGTGTGTCTTCCCGCTCGTTTTTTCACGTGTGGGTG
GGGTGGAATTGTCTTCAGGTTCTTGACAAGGCCCCAGAGATGGAGGCCGG
GAGCGTTAAGGTGAGCTGCGCTTGCACCCAAGCTAATATGTTACCATGGG
AGCCGTTTTTTTGCTATCGCGTTTAGGCGTCTTTTGGCCTTAATGTACTG
GTTTTAGTGCAGGGTATGGTCAGCCAAGGCGCCAAACCACGTTCTCCTAG
CGTCTTGTGAGGAAGGGGTCAGACAAGGGAGTCGCGCCGCGGTTGGGGTT
AGGGTTAAGGGTTCAGGGTTATCCGACGGTCACTACGAAATTCTTGACAT
TTGAGTCGGTTCATGTTTTGCGAGGGTAGACTTACGGTCTATTCGAGAAA
ATGGCGGACAATACACTAGTGTGGTGTTCGATACGAACGCAACTCACCCT
TTCCCTCTCATGCCCCCAGACCAAGCAATCGATGTTCAGGGCCCTTGTTC
TGTTCGTCTTGTACACAGCAGTGTGTTGCAACCATTTTGTCGAGTATGCG
ATACGCTCTACTGTGTGCTTTAAACTGCTACCGACGGCTGGACAGGTGGT
GTCGGGAAAGTACAAGGGCGACGACAAGTTCTTCGCTCTTGCCAAGTACG
GAGGAAAATTCTTCGCTGTGAGCGAGGCCTGCGGCCGCTGTAAATTTCCC
ATGGTGAGAGTGCTCCCTCAAGTCCCACCGTCCGCAGGACTGTTGCGGGA
CTGTGATCAACATCAGCAGGAATTGCTATTGGAAGGGTTTGCTATTTGCT
ACCAGCAGGGTTTCTATCAGTAGGCTTCACGATCGGCGGGGTTCAGTACT
AGCGGGACTTGTTTTCACCGGGCTTTGCTGTACACCTGTGTTGCATTCCC
CCCGAAAAAAAAACTGACATTGCCAAAAGTCACGACAACGAAGACAATGG
AAACACGTCGGCCGCCGTTTTCTTTACCAGGGCTTTTCGTTTCTCCGCTC
CGGCTCCGAACGTTTCCATCGAGCCAAAAATTGGCAGGGCAGATATGAGC
TCCTTGGTGCACTCCCGTGAGTGTTCCAAAGCCACAGCACTTTTAGTGTC
CTCCTTCGGGGCGGACCTCGTCGCTGAAGTTTGGAAATGTGATTCCGGGC
GCTTGGAGTTTCGGTTTCTTGTACTGTAACCAAGTATTTTTTTCCCTTCT
CGTTCTATACCACAAAAAACATACTTGGCTGCAGTACAAGAAATCGAGAA
TTCAAGCGCCTGGAACCACATTTTCAAACTTTAAGGTCCTCCCCGAAGGA
GGCTTTGGCACACTCACGGGAGTGCACCAAGGACCTCATACCTGCCCTGC
CAAATTTTGGCTCGATGGAAACGTTCGGAGCTGGAGCAGAAAAATGAAAA
GTCCTCGTCAGAAAAACGGTGGCAGACGTGCTTCCATTGTCTTTGTTGTC
GGGACTTTTTTGTGTTTTGTGGGCAGTGCAACTTAGGTGTGTTAGCAGGG
AGTGCTGTCACCAGGCTTTCTATCAGCAGGCTCTGCTATCAGCAGGGTTT
GCGATCAGGCGGGTAACCTATCACAAAGTTTACTATAGGCCGTGTTGGAA
TCACTACTACACAGAGATGACTGCTGTATACCGCGCTGGATACCTCAAGA
TCATTCTTGCGTCTCGGAGAGAGAACTGGTTGACGGATAAAACAGATATG
CAGTAAAGGATATGGAGACCCGTTAGATGTTGGCTGTGCATCCCCTCTGT
GTCCTTCGTCGCTGTGGCAAAACGTTTCCCGACCAATAGCGCCGTCACAC
AGCACATATGTTTATGTATACTGCTGCAATAGGTATGTACGTTTATCACT
CTGTCTGGAAGTTTAAGGACGGTTCGAGCATTTATATTGACACCCAACGG
TCCCCGACATTTACGGACAGAGTGATACCGGTATGTGTCAAAATTGCGAT
CTCACAGCTGTTTTTGTTTTTTTCCAAAAATCAGTGCCGCTGGTGTCCAA
CCAAATACCCAAACCCACAATCTGCTCTCCCCGTACTCATACTCTTGTTT
CTGCTTTTGACGCGCACCTACCGCTTACGCTGTGTGTGGGCACGGAAGAA
CGCCCGCGCTTGCCGTCAGCTGTCGGCTTTTTTGTGGGAGCACGTCGCGC
GCGACGAGCGAGGGTGTTCGCCGGGACCATCGATCATTTATTCCGTTTCA
AAATACCTTAAACCTTTCAGCGTTGCAGTACCGTTTTGCGCACAAAACAG
TCCTATTATGACTAGTTTGCCCCCAAAAACGGGACTGCAGTCCTGAGGCC
ACTTCTTATGCAGTCGGATTTGGAGCCAGTTGAAAAAGTCCGTTTCAGCA
CGTTCGCATGAGCTTTTGCCCCGGAAATGTTGGAAATTGGTCTTTCTCGC
CTCAGAATGTGTCGGAGTTTTCTCCAAGATCTATCTGGGGGTGTTTCCCG
CTTCTCCAGGCACCAAGATGCAGGAAATTGCCGACTGCACTTTTTCGATT
CAACTCGGTCAAATACGATCCAAACGCCCAATCGGATCGAAAAAAGCGTA
TTTTTCGATCCGATCCACGATCGGAATCATAGTCACCTCAGTTGGATCGG
AAAAGTGTGGAGGGCGATTTCTTGCAACCGGGCCTCTCGAGAAGCGGGAA
ACACCCCCCGATAGATCTTGGAGAAAACTCCGACACATTCTGAGGCGAGA
AATACCAATTTTCAACATTTCCGGGGCAAAAGGTCATGCGAACGTGCTGA
AAGGGACTTTTTCAACTGGCTCCAAATCCGACGGCGTAAGAAGTGGCCTG
AAAGGGTTAATAGGTTCGCCCTCCGACAAAGTATCCTGCATACTCCAGTC
CGATCGATATAATCGCTTATCCTCCTTTTTCACTTTATTTTGTTTTTGTT
GTTTTTGTTTTTGTGCCGACTGTATTCCAGATTAACGGCAGAGTTAAGGT
CCTCCTTGGCGACGGGAAGGCGGAGGACGTGAAGGAGGGTGTGGAGGAGG
ACCCCGAGGCAGATGTGGGGATCGGCTGTCCGCTGTGCGGAGCGATGTTC
GACATGAGAACAGGTGAGGGTCGTGAAGGTCATGAGAGCACGTGAAGGTC
ATGAAAATTTTCAACTTCATGAGAGCGGGCCAAGGTTATGGTCATCAGTC
AAGGTGATGAGAACAGGTCAAGGTCATGAAAACTGGTCAAGGTCGTGGGA
ACCGGTGAAGGCCATGATAAGAGGGCAGCATCTCGAGAATACCTAGTACA
CCTTTGTCGACATTGCATGTTTAATGTCTCTGATAGCTCGGGGTTATTTA
CTGTTTTGTTTGTGGTCGTCGCTGTTATTGGTCTTACACGACTCTGTTGG
GCGCAGAGGGGAAAAGCTCACTTCTTTTCGCCGCTGCTACTGTGACCTGC
TACTGTAGTACTAGTGTTGAAACTTGGACTGTTAACCACCATTTTTGGTA
GGGATCGCCTATGATGTGGAATAAATGCAGCTTTTTTTAATTCGCACGGT
GCCAAAAATGAGTGGCCTCTTACGAGCTGGCTGAAGCCGATTCTACGAAC
CCCCGACCGACCGAGATCACCAAGAAGAAAGAATGCAGGACCGGCAATTC
CTTTTTTTTTACAAAATCTCCCACCGCACACATGTTGACTACAGTTGCAA
TTGTCCTGCTGCGCCAAGTTCCTAGCGACAGCTTTACTATCTTTAAGACA
CGCTTCTAATTCTTCGGTCCTCGTCTACCAGGGGGGGGGGCAAACAAGTT
GACGGCAGCTTCGAATATTCTGCTGCGCTCAAACGATACTTAATTTTCCA
GACCTTTGGTATGCTTTTCGTTTTTCGATCCTCCTTGTCTAACGCCTTGC
CTTATGGTATCGGGGGGGGGGACACGCGTGGCGGCCGCAGGAGCCATCGC
TGGGGAGCAGCCTAAGGGCCTGGCGCAGACCTTCGTATCCAAGATAGTGT
CCCAAAGCGACGTCGAGAGCGTTACGCCCTATCAAGCGCAAGAACTGTCG
TCGGGGGTTATCGTCGTGCGCGTTGACTGAGCCTGGCCAAGCAAGGGCAG
TCGCG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig707:4701..9905+ >mRNA_M-pyrifera_M_contig707.16879.1 ID=mRNA_M-pyrifera_M_contig707.16879.1|Name=mRNA_M-pyrifera_M_contig707.16879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig707:4701..9905+ (Macrocystis pyrifera P11B4 male) ATGGAGGCCGGGAGCGTTAAGATGGAGGCCGGGAGCGTTAAGGTGGTGTC GGGAAAGTACAAGGGCGACGACAAGTTCTTCGCTCTTGCCAAGTACGGAG GAAAATTCTTCGCTGTGAGCGAGGCCTGCGGCCGCTGTAAATTTCCCATG GTGGTGTCGGGAAAGTACAAGGGCGACGACAAGTTCTTCGCTCTTGCCAA GTACGGAGGAAAATTCTTCGCTGTGAGCGAGGCCTGCGGCCGCTGTAAAT TTCCCATGATTAACGGCAGAGTTAAGGTCCTCCTTGGCGACGGGAAGGCG GAGGACGTGAAGGAGGGTGTGGAGGAGGACCCCGAGGCAGATGTGGGGAT CGGCTGTCCGCTGTGCGGAGCGATGTTCGACATGAGAACAGATTAACGGC AGAGTTAAGGTCCTCCTTGGCGACGGGAAGGCGGAGGACGTGAAGGAGGG TGTGGAGGAGGACCCCGAGGCAGATGTGGGGATCGGCTGTCCGCTGTGCG GAGCGATGTTCGACATGAGAACAGGAGCCATCGCTGGGGAGCAGCCTAAG GGCCTGGCGCAGACCTTCGTATCCAAGATAGTGTCCCAAAGCGACGTCGA GAGCGTTACGCCCTATCAAGCGCAAGAACTGTCGTCGGGGGTTATCGTCG TGCGCGTTGACTGAGAGCCATCGCTGGGGAGCAGCCTAAGGGCCTGGCGC AGACCTTCGTATCCAAGATAGTGTCCCAAAGCGACGTCGAGAGCGTTACG CCCTATCAAGCGCAAGAACTGTCGTCGGGGGTTATCGTCGTGCGCGTTGA CTGA back to top
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